genome.fa.s11.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  70  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22785320--22785352	13	2.5	13	95	0	57	27	9	6	57	1.53
22795804--22795830	13	2.1	13	100	0	54	14	0	7	77	0.97
22797244--22797441	105	1.9	107	87	5	294	29	17	18	34	1.94
22800785--22800819	7	4.7	7	86	13	52	82	0	17	0	0.66
22800858--22800896	12	3.2	12	89	7	53	82	0	15	2	0.79
22803034--22803683	95	6.8	95	87	1	750	31	21	21	24	1.98
22803040--22803583	285	1.9	285	88	3	835	31	20	21	26	1.98
22803526--22804284	50	15.4	50	65	12	221	31	25	21	21	1.98
22803511--22804519	100	10.2	100	83	4	1064	31	23	21	23	1.98
22803511--22804506	199	5.0	198	83	5	1082	31	24	21	23	1.98
22803918--22804092	49	3.6	49	70	9	140	33	25	20	21	1.97
22804109--22804385	50	5.6	50	69	6	177	31	22	23	23	1.99
22804946--22805257	132	2.4	132	87	5	434	32	16	23	27	1.96
22805992--22806018	13	2.1	13	100	0	54	14	0	7	77	0.97
22811587--22811621	5	6.8	5	87	6	52	40	0	0	60	0.97
22811587--22811630	21	2.0	22	95	4	81	40	0	0	59	0.98
22811598--22811632	13	2.6	13	86	4	52	45	0	0	54	0.99
22822155--22822190	13	2.8	13	91	4	56	69	2	0	27	1.02
22823890--22824225	171	2.0	171	92	1	566	30	15	27	25	1.96
22829226--22829250	13	1.9	13	100	0	50	12	0	0	88	0.53
22829255--22829292	11	3.3	11	86	13	58	39	7	0	52	1.31
22829255--22829294	13	3.2	13	93	6	66	37	7	0	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22829823--22829862	20	2.0	20	90	0	62	27	10	12	50	1.72
22829809--22829874	35	1.9	34	90	6	107	31	7	13	46	1.71
22829802--22829878	14	5.0	15	71	20	52	32	7	15	44	1.75
22829855--22829940	33	2.6	32	75	15	86	25	11	18	44	1.84
22836234--22836344	27	4.1	27	85	0	141	33	20	10	35	1.88
22850598--22850650	3	17.7	3	100	0	106	33	0	0	66	0.92
22850850--22850885	3	12.0	3	100	0	72	33	0	0	66	0.92
22861525--22861550	2	13.0	2	100	0	52	50	0	0	50	1.00
22864542--22864619	23	3.4	22	77	7	66	20	12	19	47	1.82
22864518--22864619	46	2.2	46	81	5	109	19	15	19	45	1.86
22876280--22876337	13	4.9	12	75	14	50	27	1	3	67	1.17
22876289--22876337	10	4.5	10	82	12	53	26	0	4	69	1.06
22876289--22876337	21	2.2	23	85	7	66	26	0	4	69	1.06
22876553--22876793	121	2.0	120	89	4	369	29	14	18	38	1.90
22878277--22878339	22	2.9	23	79	13	71	53	1	0	44	1.10
22878277--22878340	21	2.9	22	77	15	69	54	1	0	43	1.09
22883981--22884012	5	6.4	5	100	0	64	37	0	0	62	0.95
22887945--22887969	13	1.9	13	100	0	50	0	12	0	88	0.53
22891831--22892161	123	2.7	123	96	0	599	23	16	20	39	1.92
22900419--22900446	13	2.2	13	100	0	56	28	10	21	39	1.87
22903059--22903101	11	3.8	11	80	17	52	32	2	0	65	1.06
22903317--22903359	20	2.0	22	82	8	54	55	0	30	13	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22911528--22911667	72	2.0	70	88	4	210	31	15	25	27	1.96
22912500--22912538	12	3.4	12	86	10	55	61	0	5	33	1.18
22912413--22912767	177	2.0	178	99	0	703	52	6	2	38	1.43
22912677--22912715	12	3.4	12	86	10	55	61	0	5	33	1.18
22913616--22913644	2	14.5	2	100	0	58	48	0	0	51	1.00
22919634--22919676	15	2.9	14	80	19	52	62	0	0	37	0.95
22919630--22919681	16	3.3	15	77	22	54	61	0	0	38	0.96
22936758--22936802	6	7.5	6	84	0	54	57	0	28	13	1.36
22937424--22937468	6	7.5	6	84	0	54	57	0	28	13	1.36
22940163--22940361	104	1.9	104	90	2	319	29	18	7	45	1.76
22942932--22942992	21	3.1	20	72	11	56	44	1	9	44	1.47
22944413--22944454	22	1.9	22	85	9	59	47	0	2	50	1.14
22953066--22953102	15	2.5	15	90	0	56	10	0	32	56	1.34
22953363--22953883	126	4.1	126	90	1	848	37	16	17	28	1.92
22956864--22956912	21	2.4	21	89	3	73	46	4	0	48	1.20
22957300--22957334	18	1.9	18	88	0	52	40	2	25	31	1.70
22958809--22958858	24	2.1	23	85	3	64	68	2	0	30	1.01
22959029--22959092	30	2.1	30	91	0	101	40	3	29	26	1.71
22969537--22969580	21	2.1	21	83	8	54	2	15	22	59	1.48
22981863--22981921	20	3.0	19	83	14	75	40	0	1	57	1.09
22981863--22981921	19	3.0	19	90	9	84	40	0	1	57	1.09
22986206--22986630	210	2.0	210	99	0	832	37	17	10	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22988002--22988026	11	2.3	11	100	0	50	28	0	0	72	0.86
22993057--22993096	20	2.0	20	100	0	80	25	10	10	55	1.64
23000570--23000609	16	2.5	16	91	0	62	47	2	7	42	1.45
23002876--23002903	3	9.3	3	100	0	56	0	0	32	67	0.91
23007539--23007608	35	2.0	35	97	0	131	31	7	25	35	1.83
23014731--23014763	17	1.9	18	88	11	52	45	0	12	42	1.41
23014757--23014793	17	2.2	17	90	0	56	45	2	2	48	1.30
23014754--23014791	9	4.3	9	80	6	51	44	2	2	50	1.30
23021933--23022019	40	2.2	40	82	0	102	34	8	17	40	1.79
23022972--23023069	42	2.3	42	91	3	153	22	27	29	20	1.98
23026201--23026253	13	3.8	13	77	18	52	54	0	5	39	1.24
23028569--23028616	22	2.3	21	82	7	53	43	0	2	54	1.12
23031007--23031069	25	2.5	25	82	5	74	17	30	22	30	1.96
23041809--23041856	21	2.5	20	86	10	64	37	0	43	18	1.51
23048409--23048446	19	2.0	19	100	0	76	15	21	21	42	1.89
23051604--23051628	12	2.1	12	100	0	50	0	0	8	92	0.40
23055485--23055638	47	3.1	47	62	18	114	28	10	11	50	1.71
23055483--23055690	101	2.1	101	100	0	416	29	9	10	50	1.69
23058013--23058038	12	2.2	12	100	0	52	42	15	7	34	1.75
23062116--23062144	6	4.8	6	100	0	58	68	0	0	31	0.89
23066733--23066773	13	3.1	14	82	10	59	63	0	2	34	1.08
23072434--23072721	152	1.9	152	89	2	445	35	16	8	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23072797--23072844	23	2.1	23	88	3	71	43	18	2	35	1.62
23073105--23073145	22	1.9	22	95	5	75	43	7	2	46	1.44
23073331--23073362	10	3.2	10	95	0	55	68	21	9	0	1.17
23076292--23076384	40	2.3	40	92	0	150	43	15	5	36	1.69
23076886--23077123	93	2.5	93	80	8	277	34	20	5	39	1.77
23077131--23077214	43	1.9	44	95	2	152	38	16	1	44	1.56
23079328--23079361	17	1.9	18	94	5	61	61	0	0	38	0.96
23087880--23087930	26	1.9	27	84	11	70	56	9	0	33	1.32
23088810--23088851	22	2.0	21	86	9	59	33	9	4	52	1.55
23090913--23091466	3	184.7	3	100	0	1108	33	0	0	66	0.92
23091858--23091897	3	13.7	3	94	5	73	35	0	0	65	0.93
23091426--23092289	431	2.0	432	99	0	1721	40	11	12	34	1.80
23097769--23097826	23	2.7	21	78	5	62	15	15	22	46	1.83
23097989--23098039	23	2.1	23	82	7	57	39	3	27	29	1.74
23098558--23098613	22	2.5	22	94	0	94	21	16	30	32	1.95
23112686--23112748	18	3.4	18	80	4	63	44	3	17	34	1.65
23114282--23114327	17	2.6	17	86	3	65	47	8	8	34	1.65
23115094--23115118	3	8.3	3	100	0	50	0	0	68	32	0.90
23117004--23117051	13	3.5	14	83	11	64	47	0	2	50	1.12
23117089--23117955	433	2.0	434	99	0	1727	37	12	15	33	1.86
23121535--23121611	9	8.4	9	87	8	102	40	27	10	22	1.86
23136880--23136921	10	4.1	11	79	14	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23141055--23141114	9	6.6	9	78	14	61	63	1	1	33	1.14
23145217--23145257	22	1.9	22	90	5	66	63	0	0	36	0.95
23151852--23151903	21	2.5	20	78	6	50	30	1	5	61	1.30
23152869--23152922	22	2.6	21	81	16	67	44	1	1	51	1.22
23153017--23153046	13	2.3	13	94	0	51	40	10	0	50	1.36
23155209--23155242	2	17.0	2	100	0	68	0	0	50	50	1.00
23157000--23157087	43	2.0	43	97	0	167	48	15	10	25	1.76
23158819--23158999	89	2.0	89	100	0	362	22	17	15	44	1.86
23160191--23160246	22	2.5	22	77	11	60	28	3	5	62	1.34
23170003--23170040	13	2.8	13	88	11	51	57	10	7	23	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75