genome.fa.s11.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  39  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12331967--12332015	20	2.4	21	87	12	68	65	4	4	26	1.29
12331962--12332033	19	3.6	21	83	10	73	62	4	5	27	1.36
12331975--12332033	19	2.9	20	87	7	75	61	5	3	30	1.34
12336313--12336551	119	2.0	120	91	0	390	33	1	23	41	1.63
12341904--12341973	25	2.8	25	86	0	95	34	15	31	18	1.92
12346351--12346397	13	3.4	14	79	8	51	61	27	4	6	1.39
12352731--12352901	85	2.0	86	98	1	335	42	7	11	38	1.69
12356635--12356686	20	2.6	20	87	0	77	50	0	25	25	1.50
12365173--12365272	40	2.5	40	75	0	101	23	21	20	36	1.96
12365105--12365272	80	2.1	80	83	2	203	25	20	19	35	1.95
12365228--12365303	40	1.9	40	86	0	107	15	18	25	40	1.90
12371963--12372008	18	2.6	18	92	0	83	32	23	0	43	1.54
12379636--12379705	18	3.9	18	73	3	61	34	4	31	30	1.77
12385165--12385235	36	2.0	35	86	8	99	40	16	18	23	1.90
12387224--12387249	11	2.4	11	100	0	52	26	46	7	19	1.77
12393196--12393234	18	2.2	17	86	13	53	33	0	20	46	1.51
12393460--12393673	23	9.3	22	85	9	286	21	21	24	32	1.98
12393461--12393673	46	4.6	46	97	2	385	21	21	24	32	1.98
12393460--12393673	69	3.1	68	88	4	331	21	21	24	32	1.98
12408274--12408619	27	12.9	27	85	3	407	43	21	16	18	1.88
12409082--12409155	34	2.2	35	82	4	89	29	21	20	28	1.98
12410361--12410385	11	2.3	11	100	0	50	28	44	8	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12415715--12415786	36	2.0	36	91	0	117	47	16	18	18	1.83
12424146--12424181	19	1.9	18	94	5	63	63	0	0	36	0.94
12424331--12424364	16	2.1	16	88	0	50	52	5	0	41	1.25
12426541--12426583	22	1.9	23	85	4	61	46	2	6	44	1.43
12426779--12426890	57	2.0	56	92	1	188	48	10	5	35	1.61
12427317--12427399	33	2.6	33	84	3	107	39	0	2	57	1.12
12427339--12427406	17	4.1	17	75	11	77	42	0	1	55	1.08
12427544--12427589	11	4.2	10	84	15	56	13	2	8	76	1.11
12427540--12427588	22	2.1	23	88	7	73	14	2	8	75	1.12
12427845--12427887	18	2.4	18	88	0	68	51	0	6	41	1.29
12442667--12442715	24	2.0	25	96	4	91	53	4	6	36	1.45
12445532--12445802	145	1.9	146	90	2	438	38	23	7	29	1.83
12445982--12446055	22	3.3	22	73	21	64	59	2	1	36	1.20
12446050--12446087	13	3.1	13	85	11	53	73	10	0	15	1.09
12452646--12452679	18	1.9	18	88	5	52	20	8	11	58	1.59
12456536--12456566	16	1.9	16	93	0	53	16	0	6	77	0.97
12458508--12458544	16	2.3	17	81	13	51	59	0	2	37	1.12
12458686--12458747	29	2.1	30	85	14	85	27	12	6	53	1.63
12458697--12458754	30	2.0	29	83	10	73	27	15	6	50	1.70
12482214--12482252	20	1.9	21	89	5	62	43	2	7	46	1.46
12491519--12491552	17	1.9	18	94	5	61	44	0	0	55	0.99
12496655--12496729	27	2.7	29	81	8	75	38	1	1	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12496791--12496829	16	2.5	15	81	18	53	30	0	2	66	1.05
12496986--12497054	31	2.3	30	77	15	72	42	5	10	42	1.62
12497795--12497835	19	2.2	19	86	0	55	24	2	2	70	1.11
12497816--12497854	16	2.5	15	81	18	53	30	0	2	66	1.05
12498011--12498079	31	2.3	30	77	15	72	42	5	10	42	1.62
12501961--12501986	8	3.2	8	100	0	52	53	0	0	46	1.00
12503450--12503498	21	2.3	22	82	10	66	36	4	0	59	1.17
12503465--12503513	21	2.5	20	81	15	57	40	6	4	48	1.47
12503785--12503841	30	1.9	30	100	0	114	38	5	21	35	1.76
12506864--12506895	15	2.1	15	100	0	64	12	6	12	68	1.37
12508250--12508500	68	3.7	68	82	0	295	34	18	20	27	1.96
12508247--12508492	136	1.8	136	85	1	350	35	18	19	26	1.95
12516528--12516712	68	2.7	68	84	4	230	34	17	19	28	1.94
12523121--12523166	18	2.7	18	83	6	51	10	8	10	69	1.37
12526242--12526304	31	2.1	29	82	5	72	39	12	3	44	1.59
12532364--12532401	19	2.0	19	94	0	67	28	21	28	21	1.98
12543733--12543768	11	3.2	11	96	4	63	19	36	0	44	1.51
12543732--12543784	22	2.4	22	82	17	65	20	33	0	45	1.52
12543769--12543802	17	1.9	17	88	5	50	32	26	0	41	1.56
12545577--12545616	18	2.2	18	86	0	53	17	30	7	45	1.76
12546195--12547336	21	51.4	22	77	13	652	45	29	0	24	1.58
12546251--12546313	27	2.3	28	88	2	92	46	30	0	23	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12546189--12547336	42	25.9	42	77	11	1026	45	29	0	24	1.58
12546189--12547336	112	10.3	112	85	7	1330	45	29	0	24	1.58
12546477--12546537	27	2.3	27	91	0	95	42	32	0	24	1.55
12546589--12546649	27	2.2	28	85	2	79	44	34	0	21	1.53
12546701--12546761	27	2.2	28	85	2	79	44	34	0	21	1.53
12547465--12547649	61	3.2	60	64	20	156	39	8	8	43	1.66
12547369--12547707	114	2.9	114	92	3	572	39	9	8	43	1.67
12550710--12551241	125	4.3	125	91	0	827	30	22	17	28	1.97
12550710--12551241	249	2.1	249	90	1	843	30	22	17	28	1.97
12552037--12552068	16	1.9	17	93	6	57	84	0	15	0	0.63
12555547--12555597	2	26.0	2	96	4	95	50	0	49	0	1.00
12558212--12558537	163	2.0	163	100	0	652	39	11	15	33	1.83
12572765--12572792	1	28.0	1	100	0	56	100	0	0	0	0.00
12573247--12573297	19	2.6	19	81	9	59	31	0	5	62	1.19
12573255--12573298	10	4.5	10	81	13	56	29	0	6	63	1.20
12580545--12580606	26	2.4	26	91	0	97	38	12	12	35	1.82
12587945--12587995	13	3.9	13	97	0	93	25	7	27	39	1.83
12591059--12591134	35	2.2	36	95	4	138	28	21	11	38	1.89
12605988--12606024	18	2.0	19	89	5	58	45	2	5	45	1.40
12620570--12620614	22	2.0	22	87	8	65	35	20	31	13	1.91
12622062--12622116	27	2.0	27	92	0	92	40	18	20	21	1.92
12622332--12622476	28	5.2	28	90	4	240	22	23	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12622563--12622774	105	2.0	106	85	4	286	22	19	21	36	1.95
12627543--12627592	26	1.9	26	100	0	100	62	12	8	18	1.53
12631520--12631552	16	2.0	17	94	5	59	24	0	0	75	0.80
12631632--12631682	26	2.0	26	100	0	102	47	3	11	37	1.59
12635492--12635545	16	3.4	16	92	0	90	35	1	35	27	1.68
12635524--12635637	39	2.7	45	72	19	109	34	4	27	34	1.77
12635759--12635800	15	2.7	16	82	14	52	52	2	0	45	1.13
12635768--12635809	15	2.9	15	82	10	52	52	0	0	47	1.00
12635975--12636022	26	1.9	25	84	16	64	52	2	0	45	1.12
12635930--12636158	92	2.5	92	83	8	236	47	3	3	44	1.38
12648336--12648602	144	1.9	144	88	1	410	31	24	21	21	1.98
12648371--12648602	69	3.3	69	68	13	191	31	25	21	21	1.98
12653356--12653381	12	2.2	12	100	0	52	23	7	15	53	1.67
12656100--12656167	33	2.2	31	89	7	102	30	7	10	51	1.63
12674316--12674438	61	2.0	61	96	0	228	37	26	8	28	1.85
12679195--12679225	10	3.1	10	95	0	53	45	0	9	45	1.36
12683651--12684125	243	1.9	246	84	8	644	41	8	17	32	1.80
12690786--12690816	16	1.9	16	100	0	62	38	22	12	25	1.90
12698950--12698979	8	3.8	8	95	0	51	10	3	0	86	0.67
12711141--12711221	41	1.9	43	85	5	112	35	1	1	61	1.12
12712103--12712136	10	3.4	10	87	0	50	88	2	5	2	0.70
12713909--12714157	23	10.7	23	72	9	139	39	18	13	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12713923--12714154	70	3.3	70	87	3	306	41	18	12	27	1.87
12713933--12714156	47	4.8	47	67	12	127	40	18	13	27	1.88
12715155--12715280	43	2.9	45	77	17	140	30	28	17	23	1.97
12718395--12718421	6	4.5	6	100	0	54	62	0	0	37	0.95
12720654--12720804	41	3.7	41	81	5	171	17	19	29	33	1.95
12721497--12721533	17	2.2	17	90	9	58	54	0	0	45	1.00
12721726--12721766	21	1.9	22	85	5	57	21	0	39	39	1.54
12726416--12726724	43	7.3	41	75	11	225	22	18	30	28	1.97
12726564--12726719	82	1.9	83	87	1	233	21	19	33	25	1.97
12736708--12736762	25	2.2	25	100	0	110	21	34	32	10	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75