genome.fa.s11.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  45  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14345907--14346000	19	4.7	21	87	11	135	37	8	13	40	1.76
14345906--14346000	40	2.4	38	91	5	145	36	8	14	40	1.77
14349662--14349699	11	3.5	11	85	7	51	47	2	2	47	1.30
14349637--14349756	50	2.4	51	83	8	147	59	0	1	38	1.13
14349678--14349760	39	2.1	41	93	4	143	60	0	2	37	1.10
14352205--14352254	3	16.7	3	100	0	100	68	0	0	32	0.90
14354594--14354635	22	1.9	22	85	0	57	54	2	2	40	1.26
14357335--14357928	291	2.0	292	99	0	1163	27	11	9	51	1.70
14366124--14366704	289	2.0	290	99	0	1155	35	9	25	29	1.88
14370680--14370762	42	2.0	42	90	0	130	27	21	24	26	1.99
14379340--14379373	17	1.9	17	88	5	50	70	0	29	0	0.87
14379340--14379385	18	2.5	18	85	3	56	67	0	32	0	0.91
14386180--14386204	13	1.9	13	100	0	50	20	16	32	32	1.94
14388084--14388398	151	2.1	151	97	1	594	42	9	9	38	1.70
14404797--14404898	43	2.4	43	96	0	186	18	25	34	21	1.96
14405578--14405647	35	2.0	35	94	0	122	48	8	12	30	1.71
14408578--14408802	111	2.0	112	97	2	427	36	15	21	27	1.93
14414149--14414295	73	2.0	73	98	0	285	28	25	14	31	1.95
14414483--14414692	104	2.0	104	97	0	393	33	21	10	33	1.89
14419268--14419339	25	2.9	25	83	4	92	31	19	25	23	1.98
14419677--14419718	21	2.0	21	85	0	57	40	21	0	38	1.53
14420088--14420219	68	2.0	66	90	3	210	54	11	8	25	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14421294--14421389	49	2.0	49	100	0	192	21	19	18	39	1.92
14422589--14422949	179	2.0	180	99	0	715	47	14	10	26	1.77
14430587--14430730	74	2.0	73	87	1	207	34	17	19	28	1.94
14439960--14440014	17	3.4	17	65	10	51	50	3	7	38	1.48
14439959--14440045	32	2.7	32	87	1	111	49	2	6	41	1.42
14439989--14440055	32	2.1	32	85	0	89	46	0	7	46	1.31
14440887--14440971	42	2.0	42	93	0	143	31	17	9	41	1.82
14442831--14442902	35	2.1	35	97	0	135	37	9	11	41	1.74
14444851--14444915	25	2.6	25	82	0	94	32	13	24	29	1.94
14444904--14445044	25	5.8	24	70	12	83	34	23	26	15	1.95
14445645--14445963	109	2.9	108	81	5	367	34	17	16	31	1.93
14446183--14446244	18	3.3	18	71	20	54	64	3	4	27	1.29
14454497--14454536	16	2.4	17	87	4	55	7	10	22	60	1.54
14458435--14458564	42	3.1	42	84	11	153	29	26	16	27	1.97
14465647--14465690	2	22.5	2	95	4	81	52	0	47	0	1.00
14476167--14476194	2	14.0	2	100	0	56	50	0	0	50	1.00
14481176--14481250	39	1.9	39	94	0	132	26	28	28	17	1.98
14481308--14481332	13	1.9	13	100	0	50	48	0	8	44	1.32
14481445--14481493	20	2.3	22	79	13	66	46	8	10	34	1.67
14481455--14481493	20	2.0	20	94	0	69	46	10	12	30	1.75
14482629--14482866	131	1.8	131	85	1	334	38	14	14	32	1.87
14482629--14482901	131	2.1	131	82	2	325	38	13	15	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14482882--14482921	20	2.0	20	100	0	80	50	10	10	30	1.69
14482759--14483052	151	1.9	151	83	0	381	38	13	13	33	1.85
14482902--14483206	131	2.3	131	83	0	376	40	12	13	33	1.83
14482629--14483183	282	2.0	282	84	0	734	38	13	14	33	1.85
14487445--14487588	41	3.5	41	80	5	166	26	29	25	18	1.98
14490413--14490442	6	5.2	6	92	8	53	16	30	0	53	1.44
14490413--14490476	17	3.7	17	72	17	60	20	26	0	53	1.46
14490413--14490476	11	5.6	11	73	23	53	20	26	0	53	1.46
14507949--14508052	40	2.6	40	80	4	111	28	18	25	26	1.98
14508349--14508382	14	2.4	14	90	0	50	14	0	35	50	1.44
14508349--14508516	74	2.3	75	95	1	302	20	2	30	46	1.64
14508422--14508456	14	2.5	14	90	0	52	14	0	37	48	1.44
14508482--14508519	15	2.6	14	87	4	58	18	0	36	44	1.50
14508477--14508529	22	2.4	21	81	6	61	24	0	30	45	1.54
14508563--14508605	20	2.1	21	95	4	79	18	0	27	53	1.45
14517689--14517779	43	2.1	43	84	6	114	34	14	10	40	1.81
14518095--14518323	43	5.3	43	83	2	253	24	18	27	29	1.98
14518164--14518323	87	1.8	86	91	1	266	25	20	26	27	1.99
14522697--14522724	3	9.3	3	100	0	56	32	0	0	67	0.91
14524047--14524092	16	2.9	16	83	6	58	4	17	13	65	1.42
14532652--14532722	35	2.0	35	100	0	142	39	25	8	26	1.84
14536587--14536824	118	2.0	119	99	0	469	54	5	6	33	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14537731--14537772	22	1.9	22	85	0	57	35	2	2	59	1.23
14542230--14542303	30	2.4	29	82	8	85	24	24	12	39	1.89
14549520--14549590	31	2.3	31	95	2	126	33	1	22	42	1.63
14552057--14552110	27	2.0	27	82	10	65	59	11	14	14	1.62
14555215--14555327	43	2.6	44	77	13	117	42	21	16	19	1.89
14555250--14555424	42	4.1	42	79	2	152	43	17	16	22	1.88
14555839--14555873	17	2.1	17	88	0	52	48	17	0	34	1.47
14556664--14556729	23	2.9	23	88	0	105	25	15	15	43	1.85
14558398--14558474	38	2.0	38	94	0	136	33	14	19	32	1.92
14558676--14558709	16	2.1	17	88	5	52	58	5	0	35	1.22
14559757--14559837	40	2.0	40	92	2	137	23	22	9	44	1.82
14562908--14563166	110	2.5	102	80	10	254	30	19	19	30	1.96
14566637--14566727	36	2.7	35	75	16	93	58	12	17	12	1.63
14567830--14568084	127	2.0	127	94	1	449	27	20	23	29	1.99
14570305--14570600	51	5.6	52	76	10	237	29	21	16	32	1.95
14573915--14574039	61	2.1	60	83	7	155	35	7	20	37	1.80
14576335--14576359	3	8.3	3	100	0	50	36	0	32	32	1.58
14578791--14578889	43	2.3	43	82	5	121	37	12	27	23	1.90
14579725--14579757	2	16.5	2	93	0	57	48	0	3	48	1.17
14583036--14583180	74	2.0	74	95	0	263	40	17	11	31	1.85
14584221--14584263	22	2.0	22	85	0	59	25	13	6	53	1.65
14584272--14584306	19	1.9	17	88	11	52	20	0	14	65	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14584241--14584312	22	3.7	20	73	14	60	22	5	11	61	1.50
14585552--14585792	50	4.7	50	83	5	277	27	19	27	24	1.99
14585552--14585792	100	2.3	104	90	5	366	27	19	27	24	1.99
14586744--14586780	2	18.5	2	100	0	74	0	48	0	51	1.00
14587234--14587282	24	2.0	25	84	8	64	36	0	6	57	1.24
14594528--14594577	22	2.3	22	79	6	57	6	26	4	64	1.35
14600697--14600769	30	2.4	30	93	0	119	20	32	31	15	1.93
14601037--14601076	15	2.6	16	84	15	57	22	0	0	77	0.77
14601138--14601502	178	2.1	178	100	0	730	19	10	5	64	1.43
14603001--14603033	13	2.5	13	86	13	50	36	3	15	45	1.61
14606244--14606280	6	6.0	6	96	3	65	35	32	0	32	1.58
14610435--14610461	6	4.5	6	100	0	54	70	14	14	0	1.17
14617884--14617910	12	2.2	12	100	0	54	59	0	0	40	0.98
14618555--14618642	45	2.0	45	90	0	140	25	30	9	35	1.87
14619124--14619208	37	2.3	37	97	0	161	11	17	18	51	1.75
14619280--14619492	23	9.6	23	76	12	205	45	11	13	29	1.78
14619249--14619446	108	1.8	108	100	0	396	44	10	12	32	1.75
14619457--14626273	124	55.0	124	100	0	13634	38	8	11	41	1.72
14627101--14627150	21	2.4	21	89	0	82	36	20	40	4	1.71
14627580--14627958	43	9.0	42	87	4	428	25	20	20	33	1.97
14627624--14627958	127	2.6	125	86	4	456	24	20	21	34	1.97
14627580--14627959	85	4.5	84	86	4	430	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14629151--14629175	2	12.5	2	100	0	50	48	0	0	52	1.00
14630055--14630103	3	16.3	3	100	0	98	32	0	0	67	0.91
14630389--14630446	22	2.7	21	86	7	80	34	3	18	43	1.68
14635518--14635575	22	2.7	21	86	7	80	34	3	18	43	1.68
14641754--14641824	27	2.6	27	81	0	88	25	26	22	25	2.00
14645606--14645847	17	14.2	17	78	6	202	44	25	9	21	1.81
14650037--14650087	20	2.6	19	81	6	57	13	37	19	29	1.90
14652158--14652192	17	2.1	17	94	0	61	57	28	2	11	1.48
14652608--14652795	29	6.4	29	79	6	157	17	26	14	42	1.87
14652666--14652735	28	2.4	29	85	7	97	24	28	11	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75