genome.fa.s11.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  4  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911485--911518	14	2.5	14	90	4	52	20	0	0	79	0.73
911485--911518	13	2.5	13	90	9	50	20	0	0	79	0.73
915375--915400	2	13.0	2	100	0	52	50	0	0	50	1.00
915982--916044	26	2.5	25	82	7	65	53	3	3	39	1.33
917005--917052	25	2.0	25	83	4	62	12	8	6	72	1.26
918181--918378	98	2.0	98	100	0	396	35	13	22	29	1.92
920826--920890	31	2.1	31	88	5	96	36	12	9	41	1.75
921890--921966	30	2.6	30	91	0	118	32	37	18	11	1.87
928174--928218	11	3.7	12	88	11	65	20	0	0	80	0.72
928174--928218	6	7.3	6	92	7	65	20	0	0	80	0.72
931377--931634	141	1.8	140	82	6	333	31	22	19	27	1.98
942864--942898	17	2.1	17	89	5	54	51	0	5	42	1.25
946711--946749	14	2.8	14	88	0	60	17	5	10	66	1.39
946776--946834	30	2.0	30	93	6	102	23	3	16	55	1.56
946917--946954	18	2.1	19	85	9	53	23	0	10	65	1.23
947576--947635	3	20.0	3	92	0	102	63	0	1	35	1.05
952105--952156	18	2.7	20	74	17	56	59	0	3	36	1.16
952269--952308	14	2.9	14	84	0	53	42	15	7	35	1.75
966428--966460	15	2.1	17	88	11	52	87	6	0	6	0.65
967785--967829	22	2.0	22	86	0	63	20	6	8	64	1.44
969737--969768	2	16.0	2	100	0	64	0	50	0	50	1.00
972103--972162	31	1.9	32	90	10	97	45	18	10	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973155--973198	22	2.0	23	86	4	63	36	4	6	52	1.49
973717--973968	136	1.9	136	100	0	504	38	7	15	38	1.76
980119--980356	118	2.0	119	98	0	460	32	23	8	35	1.85
980623--980685	10	6.3	10	78	12	67	9	9	3	77	1.09
980625--980691	29	2.3	29	97	2	125	8	11	2	76	1.13
980640--980690	15	3.5	15	74	15	61	9	11	1	76	1.10
1001358--1001401	23	2.0	22	90	4	70	34	6	2	56	1.38
1002468--1002773	110	2.8	107	86	5	436	31	19	19	29	1.97
1003359--1003394	3	12.0	3	100	0	72	66	0	0	33	0.92
1006721--1006759	3	13.0	3	100	0	78	66	0	0	33	0.92
1006860--1006896	3	12.3	3	100	0	74	64	0	0	35	0.94
1006723--1006997	137	2.0	139	97	2	520	55	7	10	25	1.61
1007613--1007653	15	2.6	16	88	3	57	82	4	4	7	0.93
1010286--1010343	28	2.0	30	86	10	84	27	0	22	50	1.50
1011604--1011636	17	2.0	17	94	5	59	21	0	6	72	1.05
1011772--1011809	20	2.0	20	89	5	60	44	5	10	39	1.61
1015940--1016026	2	44.0	2	97	2	167	50	0	49	0	1.00
1023005--1023052	22	2.1	24	85	11	66	77	8	2	12	1.08
1023032--1023094	27	2.4	27	94	2	110	60	7	0	31	1.26
1023032--1023105	27	2.8	27	89	6	98	62	9	0	28	1.26
1023032--1023094	26	2.4	26	89	2	90	60	7	0	31	1.26
1024620--1024665	20	2.2	20	88	3	65	17	0	8	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027282--1027307	6	4.3	6	100	0	52	15	0	0	84	0.62
1040534--1040605	18	4.0	17	72	20	58	27	8	18	45	1.77
1043124--1043162	20	1.9	20	94	5	69	61	0	2	35	1.10
1045140--1045228	39	2.3	40	88	5	146	29	2	1	67	1.10
1045190--1045219	11	2.6	11	94	5	51	36	3	0	60	1.14
1045201--1045240	21	2.0	21	90	9	66	27	2	0	70	1.01
1046032--1046075	20	2.1	21	91	4	72	75	0	2	22	0.92
1046554--1046712	75	2.1	76	97	1	302	47	3	10	38	1.54
1054449--1054676	115	2.0	115	95	0	411	26	31	15	26	1.96
1062382--1062454	31	2.4	31	90	2	112	43	9	12	34	1.75
1063548--1063685	9	14.0	9	73	22	57	36	2	0	61	1.08
1063526--1063583	30	2.0	27	87	9	80	34	5	0	60	1.19
1063547--1063685	60	2.3	60	87	3	199	35	2	0	61	1.08
1063625--1063688	10	6.1	10	77	13	58	43	1	0	54	1.09
1063566--1063688	11	11.9	11	74	16	77	37	2	0	60	1.10
1065793--1065838	22	2.0	22	83	12	56	56	6	0	36	1.25
1066163--1066200	11	3.5	11	92	7	60	50	0	2	47	1.15
1066137--1066200	11	6.1	10	77	13	58	53	0	1	45	1.10
1066137--1066259	52	2.3	52	86	6	160	60	0	1	38	1.07
1066175--1066291	42	2.9	41	89	5	168	62	0	2	35	1.09
1068722--1068746	12	2.1	12	100	0	50	48	0	28	24	1.52
1070588--1070626	17	2.3	16	86	8	51	25	2	2	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071115--1071187	31	2.3	32	83	6	87	43	9	2	43	1.51
1071139--1071200	30	2.1	31	82	8	76	45	11	3	40	1.56
1077676--1077741	13	5.1	13	81	7	89	36	22	9	31	1.86
1091881--1091948	22	3.0	22	80	12	75	50	2	2	44	1.32
1099524--1099579	27	2.0	28	82	3	69	42	5	7	44	1.54
1104634--1104852	72	3.0	72	94	0	366	21	35	19	23	1.96
1104689--1104810	39	3.3	39	63	21	98	19	35	21	23	1.96
1109065--1109095	13	2.4	13	100	0	62	70	6	16	6	1.29
1109629--1109655	2	13.5	2	100	0	54	48	0	0	51	1.00
1113546--1113609	32	2.0	32	96	0	119	34	14	18	32	1.91
1121747--1121799	25	2.2	25	82	3	63	16	24	22	35	1.95
1121844--1121900	26	2.2	25	81	9	62	17	28	21	33	1.96
1129372--1129438	3	23.0	3	93	6	120	32	0	0	67	0.91
1134357--1134433	31	2.5	32	83	8	88	46	3	6	42	1.48
1134687--1134811	47	2.6	48	80	5	135	43	4	12	40	1.63
1134851--1134884	6	5.7	6	100	0	68	85	0	14	0	0.60
1139248--1139315	35	1.9	35	91	5	111	42	2	14	39	1.61
1140641--1140871	108	2.1	108	94	2	401	41	11	6	40	1.66
1142580--1142647	35	1.9	35	91	5	111	42	2	14	39	1.61
1145050--1145097	2	24.5	2	85	4	62	50	2	2	45	1.25
1145265--1145313	19	2.5	21	84	15	61	61	0	2	36	1.08
1156904--1156928	10	2.5	10	100	0	50	64	0	16	20	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172087--1172554	234	2.0	234	93	0	801	31	24	19	25	1.98
1178800--1178837	19	2.0	19	89	0	58	34	31	10	23	1.89
1178873--1178920	21	2.3	22	82	10	64	43	35	4	16	1.67
1180888--1180933	24	1.9	24	95	0	83	36	4	28	30	1.76
1185203--1185249	24	2.0	24	91	0	76	40	6	23	29	1.79
1188186--1188245	28	2.2	26	85	5	75	45	1	8	45	1.43
1188194--1188247	26	2.0	28	89	7	85	46	0	9	44	1.35
1192327--1192371	20	2.2	21	84	11	58	48	13	0	37	1.42
1195551--1195599	3	16.3	3	95	0	89	65	0	2	32	1.04
1195732--1195771	3	13.3	3	100	0	80	67	0	0	32	0.91
1199299--1199332	15	2.3	15	90	10	52	35	52	5	5	1.50
1200496--1200543	21	2.2	22	92	3	80	39	6	0	54	1.26
1200545--1200600	23	2.4	23	82	5	69	26	7	5	60	1.44
1204977--1205021	20	2.2	20	84	7	56	26	31	6	35	1.82
1209541--1209583	22	2.0	22	95	0	77	11	18	27	41	1.85
1209847--1210113	87	3.1	87	89	1	376	29	31	17	21	1.96
1209867--1210120	130	2.0	130	84	7	338	30	31	16	21	1.96
1209886--1210161	87	3.2	87	84	4	319	31	30	15	22	1.95
1209859--1210120	43	6.0	43	79	3	283	30	31	17	21	1.96
1209867--1210161	43	6.9	42	77	6	225	31	29	16	22	1.96
1210464--1210575	21	5.3	21	86	0	134	4	43	17	33	1.69
1210547--1210693	66	2.2	66	85	2	188	13	28	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210577--1210716	66	2.1	66	81	2	165	15	23	18	42	1.89
1228156--1228198	8	5.4	8	86	8	61	37	0	0	62	0.95
1228156--1228204	16	2.9	17	85	8	57	40	0	0	59	0.98
1234544--1234587	19	2.3	20	84	7	56	29	20	9	40	1.83
1236642--1236675	15	2.2	16	89	5	52	85	8	0	5	0.75
1236688--1236735	6	7.8	6	84	13	62	81	0	18	0	0.70
1236688--1236729	10	4.1	10	80	17	50	83	0	16	0	0.65
1236690--1236731	11	3.9	11	84	3	50	83	0	16	0	0.65
1242791--1242823	17	1.9	17	100	0	66	48	0	9	42	1.35
1243929--1243967	19	2.1	19	90	9	62	53	2	0	43	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75