genome.fa.s11.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  38  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11980802--11980919	25	4.7	25	70	12	80	46	19	3	30	1.66
11986395--11986529	66	2.0	66	86	0	189	39	17	28	15	1.90
11986758--11986877	43	2.8	42	86	6	159	29	20	25	25	1.99
11986757--11987085	42	7.7	43	76	5	240	25	19	24	30	1.98
11986760--11987044	85	3.3	84	75	9	204	25	18	25	29	1.98
11986804--11987085	127	2.2	126	81	4	309	24	18	24	32	1.97
11989433--11989462	10	3.0	10	90	0	51	30	23	0	46	1.52
11990857--11990895	20	2.0	19	85	5	51	41	7	7	43	1.62
11997747--11997785	9	4.4	9	83	6	53	53	2	7	35	1.43
11997741--11997776	17	2.1	17	94	0	63	52	5	8	33	1.55
12003380--12003540	46	3.5	46	85	0	189	16	22	15	45	1.85
12003517--12003677	45	3.6	45	87	0	232	24	20	16	37	1.93
12003517--12003716	90	2.2	90	81	0	229	23	20	18	38	1.93
12009920--12009961	21	2.0	21	85	4	57	21	14	26	38	1.91
12010269--12010432	25	6.6	25	72	13	88	37	23	12	26	1.90
12010218--12010433	50	4.3	50	82	1	245	37	23	12	25	1.91
12027904--12027939	12	3.0	12	87	0	54	13	0	5	80	0.88
12032097--12032128	16	2.0	16	93	0	55	37	21	6	34	1.79
12035106--12035155	25	1.9	27	84	8	68	68	2	4	26	1.18
12041212--12041260	24	2.1	23	84	3	62	55	4	34	6	1.44
12047524--12047644	59	2.1	59	98	0	233	37	18	9	35	1.82
12055804--12055993	50	3.8	50	87	0	254	21	29	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12064716--12064798	25	3.3	25	89	0	121	30	16	24	28	1.97
12067434--12067546	56	2.0	56	94	0	199	43	3	4	48	1.40
12067879--12068216	43	7.9	43	90	1	455	24	28	20	27	1.99
12067879--12068257	86	4.4	87	85	2	448	25	27	20	27	1.99
12067879--12068257	129	3.0	127	82	3	431	25	27	20	27	1.99
12068652--12068714	16	4.1	16	72	12	69	34	1	20	42	1.62
12068825--12068861	15	2.3	16	90	9	58	37	45	5	10	1.62
12069167--12069207	21	2.0	21	90	9	66	0	12	7	80	0.90
12069800--12069834	15	2.3	15	95	0	61	31	2	5	60	1.35
12069800--12069855	18	3.2	18	80	19	66	32	1	5	60	1.29
12071298--12071354	9	6.6	9	82	8	73	33	0	21	45	1.52
12071292--12071345	25	2.2	25	89	0	81	35	0	18	46	1.50
12071416--12071450	14	2.5	14	90	0	52	28	45	0	25	1.54
12071406--12071478	21	3.4	21	84	1	83	32	42	0	24	1.55
12071374--12071490	35	3.4	33	75	16	112	36	39	0	23	1.61
12071652--12071707	24	2.3	24	82	11	78	57	1	1	39	1.20
12071745--12071831	22	4.1	20	74	12	59	37	35	1	25	1.64
12071819--12071845	14	1.9	14	100	0	54	37	37	0	25	1.57
12072056--12072110	24	2.2	25	75	12	60	21	7	7	63	1.44
12072216--12072451	41	5.8	41	87	1	285	27	32	19	21	1.97
12072209--12072468	122	2.1	123	82	5	319	29	31	18	20	1.97
12072193--12072473	41	6.9	41	82	4	248	28	30	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12077173--12077543	53	6.6	55	71	13	247	32	19	22	26	1.97
12077599--12077703	53	2.0	53	92	0	174	33	22	22	20	1.97
12077584--12078056	53	8.7	53	68	12	170	31	21	20	26	1.98
12077635--12078064	112	3.9	112	82	5	507	30	20	19	29	1.97
12077635--12078042	224	1.8	220	86	7	592	29	21	19	28	1.98
12080114--12080143	15	2.0	15	93	0	51	23	13	23	40	1.90
12083508--12083653	77	1.9	77	88	0	220	36	15	20	26	1.93
12085091--12085134	12	3.7	11	82	14	52	81	2	2	13	0.88
12099084--12099134	23	2.2	23	85	0	66	29	7	19	43	1.79
12099977--12100052	11	6.8	11	72	26	54	42	2	1	53	1.23
12100043--12100080	20	1.9	20	100	0	76	42	2	10	44	1.52
12101056--12101087	16	2.0	16	100	0	64	37	12	25	25	1.91
12101848--12101886	17	2.3	17	90	0	60	0	51	0	48	1.00
12101851--12101889	12	3.2	12	85	0	51	0	56	0	43	0.99
12104759--12104794	19	1.9	19	88	5	56	25	16	13	44	1.85
12105986--12106037	27	1.9	27	100	0	104	19	11	7	61	1.53
12136678--12136738	28	2.2	28	85	5	81	45	0	3	50	1.17
12137488--12137518	16	1.9	16	100	0	62	41	32	0	25	1.56
12140459--12140535	10	7.2	11	71	21	65	45	1	1	51	1.17
12140457--12140543	22	4.1	20	76	17	79	41	1	2	55	1.20
12140457--12140542	10	8.2	10	71	19	59	41	1	2	54	1.20
12140459--12140524	21	3.0	22	84	6	71	45	1	1	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12148214--12148268	22	2.3	24	81	12	69	63	10	12	12	1.52
12148368--12148401	3	11.3	3	100	0	68	32	32	0	35	1.58
12153445--12153476	16	2.0	16	93	0	55	25	15	0	59	1.36
12173280--12173318	11	3.5	11	89	6	60	2	7	20	69	1.26
12173279--12173318	12	3.4	12	89	6	64	2	7	20	70	1.24
12173657--12173691	18	1.9	18	100	0	70	5	2	34	57	1.37
12179635--12179839	76	2.7	76	82	8	215	42	5	10	40	1.64
12187082--12187323	50	4.7	50	78	5	202	24	27	19	27	1.99
12216977--12217010	18	1.9	18	94	5	61	47	11	11	29	1.76
12221490--12221540	10	5.2	9	78	19	50	82	3	11	1	0.89
12224569--12224632	24	2.7	24	87	0	83	40	4	7	46	1.53
12226568--12226632	3	21.7	3	100	0	130	66	0	0	33	0.92
12229360--12229390	9	3.4	9	90	0	53	25	12	22	38	1.90
12229444--12229480	9	4.1	9	92	0	65	45	13	10	29	1.77
12234827--12234888	19	3.3	18	78	10	54	53	0	3	43	1.17
12237512--12237591	25	3.2	25	75	3	81	33	22	13	30	1.93
12237557--12237626	25	2.8	25	80	0	86	35	18	17	28	1.93
12238601--12238641	22	1.9	21	90	5	64	56	17	9	17	1.67
12243283--12243539	131	2.0	131	87	1	372	26	29	18	26	1.98
12244770--12244820	25	2.0	25	88	11	77	39	15	13	31	1.87
12246082--12246212	67	2.0	67	93	3	228	29	32	16	21	1.95
12246355--12246484	57	2.2	60	80	6	149	25	23	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12249426--12249450	13	1.9	13	100	0	50	8	20	40	32	1.81
12259318--12259351	14	2.4	14	100	0	68	29	20	11	38	1.88
12263288--12263313	7	3.7	7	100	0	52	0	11	0	88	0.52
12263515--12263805	58	5.0	58	100	0	582	24	15	12	48	1.78
12269496--12269544	24	2.0	24	88	7	73	65	4	16	14	1.42
12272081--12272452	100	3.7	100	84	2	462	29	24	23	22	1.99
12272110--12272450	50	6.8	50	70	5	215	30	24	22	22	1.99
12276946--12276994	3	16.0	3	79	12	55	34	2	2	61	1.19
12276949--12276990	17	2.5	17	92	0	66	35	2	2	59	1.23
12277003--12277040	12	3.2	12	81	3	51	31	5	7	55	1.51
12277006--12277051	23	2.0	24	83	12	60	28	4	10	56	1.53
12281667--12281700	18	1.9	17	88	5	50	70	5	8	14	1.31
12281696--12281732	18	2.1	17	90	5	56	81	0	16	2	0.81
12283045--12283593	44	12.6	43	69	13	257	31	18	21	28	1.97
12283177--12283626	132	3.4	132	93	0	765	31	19	20	28	1.97
12283613--12283983	100	3.7	100	85	2	449	29	24	22	22	1.99
12283642--12283985	50	6.9	50	69	8	189	30	24	22	22	1.99
12283905--12284071	86	2.0	85	89	3	255	28	28	23	19	1.98
12285481--12285529	3	16.0	3	79	12	55	34	2	2	61	1.19
12285484--12285525	17	2.5	17	92	0	66	35	2	2	59	1.23
12287734--12287841	53	2.0	53	87	3	155	36	25	11	26	1.90
12288116--12288156	21	1.9	22	85	5	57	41	14	0	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12292911--12293074	79	2.1	78	84	4	213	28	17	10	43	1.82
12304959--12305013	26	2.1	26	100	0	110	29	21	7	41	1.80
12305892--12305990	42	2.3	41	83	10	119	19	18	18	44	1.87
12305919--12306053	63	2.1	64	86	5	186	16	21	18	43	1.88
12305884--12306062	21	8.5	21	68	11	107	16	20	17	44	1.87
12306814--12306906	42	2.2	42	90	0	141	18	21	34	25	1.96
12314856--12314885	13	2.3	13	100	0	60	53	10	0	36	1.35
12320391--12320442	24	2.2	24	85	0	68	50	7	3	38	1.50
12323914--12324085	50	3.5	50	77	0	148	22	27	20	28	1.99
12331826--12331884	30	2.0	30	83	12	77	52	1	6	38	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75