genome.fa.s11.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  34  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10681190--10681249	26	2.3	27	85	2	77	45	13	10	31	1.76
10685732--10685766	17	2.1	17	88	0	52	40	17	5	37	1.73
10686335--10686382	3	16.3	3	95	4	89	35	0	0	64	0.94
10690934--10690980	3	15.7	3	100	0	94	31	0	0	68	0.90
10691825--10691869	7	6.6	7	84	5	56	22	11	33	33	1.89
10692952--10692988	2	18.5	2	100	0	74	48	0	0	51	1.00
10697098--10697166	31	2.3	30	82	2	75	47	10	8	33	1.68
10697341--10697416	40	1.9	40	81	7	93	39	23	15	21	1.92
10697411--10697824	114	3.7	111	78	9	390	23	25	25	25	2.00
10697746--10697989	72	3.4	72	99	0	479	21	24	25	29	1.99
10708795--10708837	22	2.0	22	90	0	68	41	25	20	11	1.86
10712170--10712198	2	14.5	2	100	0	58	0	48	0	51	1.00
10714189--10714213	8	3.1	8	100	0	50	76	0	0	24	0.80
10724611--10724682	37	1.9	38	85	2	101	41	4	22	31	1.73
10729805--10729836	17	1.9	16	93	6	55	28	0	6	65	1.16
10735264--10735394	70	1.9	69	85	4	185	35	13	11	38	1.81
10736135--10736177	23	1.9	22	85	4	59	20	9	9	60	1.55
10740232--10740264	17	1.9	17	93	0	57	75	9	0	15	1.03
10741558--10741598	18	2.3	19	83	12	59	21	4	2	70	1.18
10741567--10741604	18	2.1	18	90	0	58	23	5	2	68	1.23
10747430--10747492	19	3.2	20	88	11	94	34	20	9	34	1.85
10747439--10747492	19	2.8	19	97	0	99	35	20	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747908--10748136	44	5.2	44	65	4	156	22	25	26	25	2.00
10747852--10748876	88	11.8	88	84	2	1169	21	24	26	27	2.00
10748159--10748476	44	7.2	44	64	14	145	23	25	24	26	2.00
10747864--10748883	263	3.9	262	81	5	1195	21	24	25	27	2.00
10754816--10754904	11	8.5	11	74	9	53	55	0	3	41	1.17
10754831--10754913	11	7.9	11	69	23	63	55	0	3	40	1.17
10754814--10754911	31	3.1	32	83	12	123	57	0	3	39	1.14
10755117--10755210	39	2.3	40	90	3	145	65	1	3	29	1.14
10755970--10756019	21	2.5	19	84	12	73	36	18	10	36	1.84
10755975--10756018	21	2.1	21	95	0	79	38	15	9	36	1.80
10756747--10756795	16	3.2	16	83	11	50	63	6	0	30	1.19
10758274--10758311	4	9.5	4	100	0	76	26	23	0	50	1.50
10767331--10767386	18	3.1	18	73	16	53	14	7	5	73	1.23
10768058--10768104	23	2.1	21	84	7	58	31	4	2	61	1.27
10778813--10778901	46	2.0	44	83	16	112	37	23	7	31	1.84
10778883--10778934	16	3.2	16	88	0	86	30	26	3	38	1.74
10779533--10779587	27	2.0	27	100	0	110	29	32	7	30	1.84
10784134--10785254	228	4.9	228	92	0	1695	28	29	22	19	1.98
10784134--10785497	228	6.0	228	89	0	1638	28	27	23	20	1.99
10786993--10787040	19	2.5	19	86	0	60	50	8	8	33	1.63
10800730--10800791	29	2.1	29	85	5	81	32	9	8	50	1.65
10806656--10806721	36	1.9	32	87	6	78	74	12	4	9	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10810519--10810584	36	1.9	32	87	6	78	74	12	4	9	1.21
10812944--10812993	25	2.0	25	88	7	75	46	0	22	32	1.52
10814457--10814503	22	2.1	22	88	0	67	68	2	4	25	1.19
10816338--10816669	46	6.8	51	77	8	262	30	25	17	26	1.98
10816385--10816669	46	6.0	46	77	8	282	29	25	17	27	1.97
10816352--10816675	97	3.3	97	88	0	459	29	26	16	27	1.97
10816975--10817030	24	2.3	24	90	0	94	30	25	10	33	1.90
10823966--10824013	24	2.0	24	83	0	60	8	25	22	43	1.81
10825763--10825810	24	2.0	24	83	0	60	8	25	22	43	1.81
10829779--10829803	13	1.9	13	100	0	50	64	0	0	36	0.94
10829840--10829883	3	14.7	3	81	9	54	63	2	4	29	1.26
10829840--10829884	18	2.5	18	85	0	63	64	2	4	28	1.25
10829895--10829925	15	2.1	14	94	5	53	83	3	0	12	0.75
10831120--10831159	19	2.2	19	86	13	57	15	2	42	40	1.60
10837161--10837193	17	1.9	17	88	11	50	60	0	0	39	0.97
10844623--10844672	3	17.0	3	78	12	50	28	8	0	64	1.22
10851641--10851979	44	7.7	45	69	10	173	27	21	19	31	1.98
10851641--10851762	45	2.7	45	78	6	113	27	22	18	31	1.97
10851513--10852104	217	2.7	217	93	1	963	26	20	20	31	1.98
10851978--10852232	128	2.0	128	89	1	395	26	20	21	31	1.98
10852140--10852414	88	3.1	87	80	3	309	25	21	20	32	1.97
10852305--10852414	44	2.5	44	80	7	125	28	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10868601--10868641	21	2.0	21	90	0	64	21	17	26	34	1.95
10868606--10868649	21	2.1	21	86	0	61	27	20	22	29	1.99
10870041--10870208	83	2.0	83	90	0	264	33	13	29	23	1.93
10878600--10878702	42	2.5	41	90	3	152	18	3	46	31	1.67
10878600--10878715	42	2.8	41	85	2	151	18	6	44	30	1.74
10883787--10883821	17	2.1	17	89	5	54	57	8	2	31	1.44
10884612--10884652	22	1.9	21	85	5	55	7	26	12	53	1.64
10897777--10897875	47	2.1	47	83	9	121	60	4	3	32	1.30
10902106--10902132	14	1.9	14	100	0	54	59	14	14	11	1.62
10914457--10914730	46	5.9	46	91	1	379	45	17	13	23	1.84
10914606--10914844	114	2.1	115	94	1	417	45	18	13	22	1.84
10914652--10914794	68	2.1	69	90	2	225	46	18	13	21	1.84
10914723--10914846	46	2.7	46	88	4	182	45	18	12	23	1.83
10915452--10915574	43	2.9	43	82	2	149	31	26	17	25	1.97
10920213--10920252	3	13.0	3	89	5	62	67	0	0	32	0.91
10931238--10931263	9	2.9	9	100	0	52	11	11	0	76	1.01
10945479--10945540	28	2.2	28	97	2	117	29	6	33	30	1.83
10945971--10946084	56	2.0	56	100	0	228	35	14	7	43	1.72
10955267--10955321	25	2.2	25	83	6	67	27	21	27	23	1.99
10955831--10955874	21	2.1	21	86	0	61	43	9	2	45	1.48
10965495--10965531	9	4.1	9	85	0	56	43	13	10	32	1.79
10966544--10966618	27	2.8	27	91	0	123	38	25	18	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10966544--10966629	27	3.2	27	85	3	111	36	26	17	19	1.94
10967001--10967222	54	4.1	54	87	6	317	43	20	17	18	1.88
10967001--10967223	81	2.8	80	88	1	320	43	20	17	18	1.88
10967001--10967223	27	8.3	27	87	2	277	43	20	17	18	1.88
10967586--10967729	28	5.2	28	82	0	173	28	23	18	29	1.97
10968335--10968379	21	2.1	21	83	0	54	42	11	2	44	1.52
10968373--10968397	11	2.3	11	100	0	50	28	16	0	56	1.41
10971488--10971712	109	2.1	109	88	1	335	29	23	16	31	1.96
10974214--10974276	27	2.3	27	81	10	67	26	20	11	41	1.86
10983552--10983586	18	2.0	18	88	5	54	51	14	8	25	1.70
10984338--10984384	23	2.0	23	100	0	94	36	25	17	21	1.94
10987009--10987111	42	2.5	42	84	9	122	29	23	19	28	1.98
10992836--10992884	19	2.4	21	83	12	59	26	2	8	63	1.34
11009574--11009611	20	1.9	20	88	0	58	65	2	2	28	1.19
11010194--11010232	20	2.0	20	94	0	69	64	2	2	30	1.21
11012747--11012783	17	2.1	18	90	10	58	32	2	29	35	1.72
11012756--11012792	17	2.1	17	90	5	56	37	0	29	32	1.58
11017046--11017346	57	5.3	57	80	1	300	29	21	17	30	1.96
11030535--11030574	20	2.0	20	90	0	62	50	10	10	30	1.69
11030523--11030589	34	1.9	35	87	3	100	46	11	8	32	1.72
11032183--11032223	21	2.0	21	95	0	73	60	7	0	31	1.24
11032187--11032266	38	2.1	38	84	11	101	56	7	0	36	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11036816--11036855	19	2.1	19	100	0	80	37	10	15	37	1.80
11036819--11036868	19	2.5	19	90	6	73	40	12	12	36	1.79
11036819--11036874	21	2.8	19	80	15	60	41	10	12	35	1.78
11037068--11037106	19	2.0	21	85	10	55	15	10	5	69	1.34
11043779--11043963	44	4.2	44	68	13	137	31	17	22	28	1.97
11043733--11045319	132	12.0	132	98	0	2904	29	17	26	26	1.97
11045604--11045667	19	3.3	19	89	8	101	39	9	14	37	1.78
11045605--11045680	21	3.7	21	92	3	120	40	10	11	36	1.76
11057634--11057677	7	6.1	7	87	12	63	27	0	13	59	1.35
11057632--11057685	21	2.6	21	96	0	99	27	0	14	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75