genome.fa.s11.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  47  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14928383--14928436	26	2.1	26	100	0	108	48	18	11	22	1.79
14933472--14933510	19	2.0	21	85	10	55	69	5	10	15	1.34
14933709--14933788	21	3.7	21	78	18	92	37	11	10	41	1.74
14933709--14933789	19	3.8	20	83	15	76	37	12	9	40	1.76
14933700--14933769	21	3.0	25	78	18	87	37	11	8	42	1.72
14933700--14933788	44	2.0	44	86	6	126	37	12	8	41	1.74
14934104--14934132	11	2.5	12	88	11	51	41	0	34	24	1.55
14934317--14934394	40	2.0	40	89	0	120	21	29	26	21	1.99
14934455--14934512	29	2.0	29	89	0	89	39	17	15	27	1.90
14934468--14934524	29	2.0	29	92	0	96	40	14	12	33	1.83
14935767--14935822	20	2.8	20	81	2	69	30	19	8	41	1.82
14940320--14940347	2	14.0	2	100	0	56	0	50	0	50	1.00
14942193--14942242	20	2.7	17	75	19	55	36	24	10	30	1.88
14944186--14944216	16	1.9	16	93	0	53	48	0	0	51	1.00
14945281--14945347	34	1.9	35	87	3	100	34	7	10	47	1.66
14946417--14946884	233	2.0	232	96	0	864	42	16	13	28	1.85
14947484--14947591	51	2.1	51	100	0	216	53	24	11	11	1.68
14951657--14951725	29	2.4	30	78	7	79	37	5	4	52	1.46
14955306--14955330	5	5.0	5	100	0	50	80	0	0	20	0.72
14963960--14964098	39	3.6	39	86	1	181	30	2	20	46	1.65
14965983--14966009	13	2.1	13	100	0	54	66	0	18	14	1.25
14981387--14981452	24	2.7	26	73	20	70	65	3	4	27	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14987591--14987615	4	6.2	4	100	0	50	76	24	0	0	0.80
14997202--14997236	18	2.0	17	94	5	61	62	0	2	34	1.10
14997202--14997235	8	3.8	9	88	11	52	64	0	2	32	1.08
14997201--14997247	16	2.8	16	82	17	60	61	0	2	36	1.08
14997572--14997647	31	2.5	31	95	0	134	43	13	15	27	1.84
14998418--14998496	31	2.5	32	83	10	108	34	3	1	60	1.23
15000726--15000756	3	10.3	3	100	0	62	67	0	0	32	0.91
15014352--15014993	322	2.0	323	93	1	1110	23	15	23	37	1.93
15021593--15021783	50	3.8	50	76	3	145	21	27	21	28	1.99
15044833--15044866	3	11.3	3	100	0	68	67	0	0	32	0.91
15049695--15049902	31	6.7	31	78	0	164	28	15	17	37	1.91
15050967--15051007	21	2.0	21	95	0	73	41	19	19	19	1.91
15056224--15056248	10	2.5	10	100	0	50	72	0	12	16	1.13
15059607--15059631	6	4.2	6	100	0	50	36	0	0	64	0.94
15060970--15061009	20	2.0	20	85	0	53	50	10	10	30	1.69
15060958--15061024	34	1.9	35	87	3	100	46	11	8	32	1.72
15077250--15077285	18	2.0	18	89	10	56	83	8	0	8	0.82
15084582--15084623	21	2.0	21	86	9	59	45	2	0	52	1.13
15093176--15093302	70	1.9	66	85	9	175	44	9	12	33	1.75
15095189--15095228	20	2.0	20	85	9	55	10	17	2	70	1.27
15095788--15095814	3	9.0	3	100	0	54	66	0	33	0	0.92
15095984--15096021	20	1.9	20	88	0	58	44	5	15	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15099800--15099971	85	2.0	86	97	2	328	54	8	2	34	1.45
15099815--15099995	85	2.2	84	88	7	264	58	8	2	30	1.42
15100344--15100384	3	13.3	3	94	5	73	34	2	0	63	1.08
15101284--15101367	41	2.1	39	80	8	89	64	2	1	32	1.14
15102945--15103010	33	2.0	33	93	0	114	37	22	13	25	1.91
15105345--15105410	33	2.0	33	93	0	114	37	22	13	25	1.91
15111271--15111345	19	3.8	19	87	6	96	34	18	10	36	1.86
15112256--15112376	45	2.7	45	85	2	136	23	25	21	28	1.99
15112498--15113291	88	9.0	88	90	0	1147	23	26	24	25	2.00
15114531--15114580	6	8.5	6	77	18	52	0	12	4	84	0.76
15115414--15115448	12	2.9	12	86	0	52	57	8	17	17	1.64
15119480--15119554	19	3.8	19	86	6	114	34	17	12	36	1.87
15121697--15121730	16	2.1	16	88	0	50	23	38	17	20	1.93
15122139--15122195	30	1.9	29	82	10	71	45	28	0	26	1.54
15122890--15122957	26	2.6	25	77	6	73	16	8	11	63	1.52
15122890--15122962	27	2.8	25	75	8	74	16	9	13	60	1.59
15125423--15125459	19	1.9	19	88	0	56	32	5	8	54	1.53
15125915--15125965	21	2.3	21	83	6	57	45	1	11	41	1.52
15125931--15125973	21	2.0	21	86	8	61	41	4	13	39	1.66
15128760--15129547	392	2.0	393	99	0	1560	35	9	11	43	1.74
15139753--15139866	34	3.4	34	67	13	90	31	13	22	32	1.92
15139703--15140089	68	5.7	67	80	4	321	34	14	21	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15139760--15140105	68	5.1	67	80	5	349	34	15	21	28	1.94
15139703--15140105	135	3.0	135	80	1	432	34	15	21	29	1.93
15141833--15141894	30	2.1	30	100	0	124	48	6	19	25	1.72
15142716--15142758	21	2.0	21	90	0	68	18	27	13	39	1.89
15147703--15147733	3	10.3	3	100	0	62	67	0	32	0	0.91
15148879--15149005	63	2.0	63	96	0	236	22	23	12	41	1.88
15161652--15161733	40	2.0	40	100	0	164	23	30	21	24	1.99
15161692--15161817	50	2.5	50	94	0	225	23	31	20	24	1.98
15164219--15164486	29	9.2	29	80	5	290	36	13	25	24	1.91
15201021--15201100	31	2.6	30	84	5	90	35	10	11	43	1.74
15201756--15202802	532	2.0	534	93	0	1819	24	18	26	30	1.98
15203891--15204043	29	5.2	30	80	12	129	31	24	4	39	1.75
15204299--15204323	11	2.3	11	100	0	50	68	16	8	8	1.38
15204438--15204488	21	2.5	20	90	6	75	76	9	13	0	1.02
15204570--15204645	7	10.3	7	73	10	53	75	1	23	0	0.89
15204572--15204645	12	6.3	11	76	14	76	75	1	22	0	0.88
15204570--15204655	19	4.6	19	78	15	90	73	1	25	0	0.91
15204573--15204664	37	2.5	36	78	16	91	75	1	22	1	0.94
15204758--15204808	24	2.1	24	89	10	77	70	5	23	0	1.09
15204758--15204812	20	2.6	22	88	8	80	67	7	25	0	1.16
15204992--15205025	14	2.6	14	90	9	54	20	11	2	64	1.39
15205402--15205447	17	2.6	17	83	12	58	30	15	8	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15205506--15205590	17	5.0	17	71	12	68	36	12	12	37	1.82
15205504--15205592	35	2.6	36	85	5	112	37	13	12	37	1.82
15205719--15205769	27	2.0	25	88	7	75	23	13	13	49	1.78
15205719--15205786	25	2.8	26	80	12	65	27	11	10	50	1.71
15205748--15205907	18	8.7	19	70	16	63	37	10	8	43	1.69
15205773--15205844	17	4.1	17	78	8	63	36	6	9	47	1.64
15205866--15205913	19	2.4	21	86	10	73	41	10	6	41	1.64
15205866--15205943	19	4.2	19	76	14	72	37	11	10	41	1.75
15205866--15205943	20	4.1	20	78	18	78	37	11	10	41	1.75
15205879--15205962	38	2.2	38	80	4	98	35	10	10	42	1.74
15205886--15205973	37	2.4	37	80	14	110	30	10	12	46	1.75
15206184--15206219	15	2.2	17	90	9	58	66	5	0	27	1.13
15209689--15209721	14	2.4	14	94	0	57	33	0	36	30	1.58
15232207--15232236	16	1.9	15	93	6	51	46	13	0	40	1.43
15232550--15232579	16	1.9	16	93	6	53	50	20	0	30	1.49
15233725--15233808	25	3.4	24	82	12	116	35	20	22	21	1.96
15239734--15239816	25	3.3	25	84	0	103	27	22	25	24	2.00
15248270--15248353	25	3.4	25	98	0	159	21	21	26	30	1.98
15248245--15248356	50	2.2	50	87	0	161	23	23	22	31	1.99
15254317--15254357	21	2.0	21	85	9	57	68	4	9	17	1.35
15258667--15258696	16	1.9	16	93	6	53	50	16	13	20	1.78
15260210--15260312	45	2.3	44	86	5	145	21	19	10	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15260216--15260288	22	3.3	21	75	16	76	21	19	10	47	1.79
15265003--15265055	8	6.4	8	78	8	52	32	1	1	64	1.15
15265003--15265073	34	2.1	34	94	0	124	32	2	4	60	1.30
15265012--15265084	34	2.1	34	82	0	83	32	4	8	54	1.49
15276315--15276365	27	1.9	26	88	11	77	13	19	23	43	1.87
15295067--15295097	2	15.5	2	100	0	62	48	0	0	51	1.00
15295098--15295131	2	17.0	2	100	0	68	50	0	50	0	1.00
15306485--15306517	13	2.5	13	86	13	50	27	6	3	63	1.32
15308159--15308243	40	2.2	40	85	6	111	55	0	2	42	1.12
15316634--15316690	29	1.9	30	89	3	89	33	12	31	22	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75