genome.fa.s11.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  31  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9729454--9729508	27	2.0	27	82	10	67	49	1	7	41	1.41
9733875--9733935	26	2.4	25	81	5	68	47	14	6	31	1.70
9735847--9735913	31	2.2	31	97	0	125	17	17	2	61	1.47
9736859--9736906	22	2.3	21	85	7	62	12	20	22	43	1.86
9744389--9744420	13	2.5	13	89	0	55	0	12	15	71	1.14
9744403--9744466	30	2.2	30	86	5	87	0	9	10	79	0.93
9744389--9744463	37	2.0	36	84	7	96	0	10	13	76	1.03
9753176--9753260	22	3.8	23	78	6	59	27	15	20	37	1.92
9757034--9757091	25	2.4	24	80	11	64	63	1	25	8	1.32
9767444--9767476	17	1.9	17	93	0	57	57	9	12	21	1.62
9778811--9778876	17	3.9	17	72	7	53	42	15	6	36	1.71
9779506--9779545	18	2.2	18	90	0	62	40	15	12	32	1.84
9779515--9779558	18	2.4	18	80	0	52	45	18	6	29	1.75
9783150--9783229	42	1.9	42	87	5	117	27	23	18	30	1.98
9783150--9783304	43	3.6	43	82	4	154	27	28	20	24	1.99
9785879--9785904	11	2.4	11	100	0	52	84	7	7	0	0.77
9787098--9787153	7	8.0	7	91	0	67	30	50	0	19	1.48
9787106--9787157	7	7.4	7	93	0	68	32	46	0	21	1.52
9787084--9787153	14	5.0	14	79	6	70	30	45	0	24	1.53
9787744--9787935	41	4.7	41	85	3	246	28	26	20	25	1.99
9787972--9788067	39	2.4	39	83	8	106	19	22	18	38	1.93
9790272--9790398	21	6.2	20	68	11	69	17	15	18	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9790293--9790398	41	2.5	41	77	8	106	18	16	18	46	1.85
9790327--9790398	22	3.5	20	70	10	65	19	13	18	48	1.81
9793692--9793734	20	2.2	20	83	4	52	46	9	0	44	1.35
9793702--9793942	119	2.0	120	99	0	475	44	10	1	42	1.49
9793729--9793911	58	3.1	58	62	18	142	44	10	2	42	1.50
9806562--9806617	17	3.4	16	78	11	60	41	0	1	57	1.09
9806566--9806618	27	2.0	27	89	7	83	43	0	1	54	1.11
9806562--9806616	5	11.2	5	74	18	53	40	0	1	58	1.09
9807292--9807338	24	2.0	23	84	12	60	51	4	14	29	1.62
9809268--9809313	15	3.1	14	81	9	56	28	15	28	28	1.96
9810785--9811011	44	5.2	44	63	5	127	25	26	25	21	2.00
9810639--9811225	88	6.7	88	87	0	789	29	26	23	20	1.99
9811225--9811346	44	2.8	43	82	5	147	27	18	24	29	1.98
9811416--9811514	50	2.0	50	85	0	135	27	23	25	24	2.00
9811710--9812172	44	10.7	44	69	13	219	30	21	22	26	1.98
9811841--9811959	45	2.7	44	76	16	120	26	21	26	26	1.99
9811695--9812172	217	2.2	218	87	2	676	30	20	22	26	1.98
9812683--9812755	19	3.8	19	92	0	128	35	9	17	36	1.83
9812962--9813006	23	2.0	23	81	0	54	22	0	15	62	1.33
9818362--9818389	14	2.0	14	100	0	56	78	7	7	7	1.09
9819112--9819249	42	3.4	41	82	3	143	42	18	23	15	1.88
9819282--9819320	19	2.1	19	100	0	78	10	20	15	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9821419--9821546	39	3.2	39	82	4	114	33	19	24	22	1.97
9821436--9821550	39	2.9	39	84	2	151	34	19	21	24	1.96
9821609--9821808	41	4.9	41	73	11	137	24	21	25	29	1.99
9822057--9822261	14	13.9	14	70	18	105	20	1	30	47	1.59
9822057--9822175	7	16.7	7	74	11	82	19	1	29	49	1.58
9822120--9822173	29	1.9	27	88	7	81	16	0	31	51	1.45
9822211--9822262	7	7.3	7	85	8	52	19	0	34	46	1.50
9822211--9822262	13	3.6	14	77	12	52	19	0	34	46	1.50
9822307--9822474	7	23.7	7	72	7	52	23	1	30	44	1.64
9822307--9822360	14	3.9	14	85	0	72	22	0	31	46	1.52
9822392--9822467	35	2.1	36	83	7	93	22	0	35	42	1.54
9822407--9822456	20	2.4	21	86	3	75	22	0	42	36	1.54
9822592--9822627	17	2.1	17	100	0	72	38	0	11	50	1.38
9826898--9827013	43	2.7	43	87	2	144	25	17	31	26	1.97
9827262--9827328	35	1.9	35	90	0	107	46	8	5	38	1.60
9827339--9827455	56	2.1	56	93	0	198	42	16	3	37	1.65
9833468--9833626	43	3.7	43	79	5	124	27	21	27	24	1.99
9833507--9833631	43	2.9	43	82	4	153	26	19	28	25	1.98
9842200--9842237	16	2.2	18	86	9	53	28	21	0	50	1.49
9846846--9846884	19	2.1	19	85	9	53	35	12	10	41	1.77
9856201--9856550	91	3.8	90	81	7	384	35	25	14	25	1.93
9856201--9856550	183	1.9	183	82	3	436	35	25	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9862050--9862180	69	1.9	71	85	3	185	23	7	25	42	1.80
9868819--9868877	16	3.6	16	73	20	50	8	11	1	77	1.05
9868792--9868832	6	6.8	6	100	0	82	14	0	0	85	0.60
9868789--9868877	6	14.8	6	87	6	74	10	8	1	79	0.98
9873232--9873315	9	9.4	9	88	2	107	47	23	5	22	1.73
9873232--9873307	27	2.9	27	92	2	127	47	23	6	22	1.74
9873231--9873315	27	3.2	27	88	1	118	48	23	5	22	1.72
9873422--9873465	18	2.4	18	88	0	61	13	2	43	40	1.57
9877359--9877664	92	3.3	91	85	1	405	33	26	14	25	1.94
9878784--9878884	52	2.0	52	84	7	138	53	7	5	32	1.54
9879526--9879558	11	3.2	11	87	12	52	39	9	0	51	1.34
9891838--9892637	398	2.0	399	99	0	1566	31	19	16	33	1.94
9893737--9893783	21	2.1	23	85	14	64	61	4	4	29	1.34
9900846--9900885	20	2.0	20	85	4	55	50	0	10	40	1.36
9902476--9902637	25	6.6	25	72	5	89	30	22	27	19	1.98
9902572--9902637	24	2.7	24	83	2	69	31	24	28	15	1.95
9903866--9903896	15	2.0	16	93	6	55	64	9	0	25	1.24
9904938--9904979	21	2.0	21	90	4	68	71	4	0	23	1.05
9917142--9917303	25	6.6	25	72	5	89	30	22	27	19	1.98
9917238--9917303	24	2.7	24	83	2	69	31	24	28	15	1.95
9918532--9918562	15	2.0	16	93	6	55	64	9	0	25	1.24
9919604--9919645	21	2.0	21	90	4	68	71	4	0	23	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9925519--9925570	4	13.0	4	76	15	54	75	3	0	21	0.97
9925517--9925565	13	3.8	12	79	12	53	77	4	0	18	0.92
9925519--9925565	18	2.7	18	90	3	69	76	4	0	19	0.95
9926023--9926062	19	2.2	19	90	4	64	77	5	0	17	0.94
9925530--9926508	496	2.0	496	95	0	1780	37	18	12	30	1.88
9928171--9928197	2	13.5	2	100	0	54	51	0	0	48	1.00
9931699--9931820	48	2.5	48	78	2	129	27	7	18	45	1.76
9931688--9931820	24	5.6	24	75	4	117	25	7	20	46	1.76
9931896--9931958	27	2.4	27	85	15	87	19	25	22	33	1.97
9931914--9931966	27	2.0	27	81	7	63	22	26	20	30	1.98
9936012--9936078	27	2.5	27	90	0	107	37	19	19	23	1.94
9958203--9958382	39	4.6	39	84	1	209	31	3	21	44	1.68
9959103--9959197	42	2.3	42	90	3	147	32	17	14	34	1.91
9960232--9960266	18	1.9	18	100	0	70	40	0	37	22	1.55
9961344--9961490	73	2.0	73	95	0	267	37	23	14	25	1.92
9962259--9962334	40	1.9	39	84	10	102	42	15	2	39	1.61
9971219--9971245	11	2.5	11	100	0	54	70	0	0	29	0.88
9971381--9971418	18	2.1	19	85	14	53	36	2	23	36	1.69
9979619--9979655	18	2.1	18	94	0	65	45	2	10	40	1.53
9981717--9981773	3	19.0	3	96	0	105	68	0	0	31	0.90
9981721--9981825	6	16.0	6	80	16	57	70	1	2	24	1.11
9981717--9981824	12	8.8	13	78	18	85	69	1	2	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9992989--9993038	26	1.9	26	84	8	66	64	12	8	16	1.49
10004449--10004505	27	2.1	27	86	0	78	38	10	21	29	1.87
10007715--10007755	6	6.8	6	88	0	64	39	0	9	51	1.35
10007709--10007756	12	3.8	12	94	5	78	39	0	10	50	1.37
10007713--10007756	2	22.0	2	80	0	52	40	0	9	50	1.34
10008478--10008633	69	2.2	70	84	6	199	32	10	15	41	1.82
10014566--10014971	41	9.9	41	87	2	573	18	24	29	27	1.98
10015598--10015659	7	8.9	7	80	7	63	14	1	50	33	1.53
10015595--10015693	7	14.0	7	79	12	60	17	2	44	36	1.60
10015811--10015872	21	2.9	21	77	13	65	24	0	37	38	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75