genome.fa.s11.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  7  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1896036--1896120	30	2.9	29	81	8	84	69	8	22	0	1.15
1896042--1896089	22	2.2	22	82	14	55	72	10	16	0	1.10
1896467--1896525	28	2.1	28	90	0	91	50	1	22	25	1.58
1899141--1899187	25	1.9	25	86	4	69	17	25	17	40	1.90
1899262--1899390	26	5.0	26	75	8	111	20	24	20	35	1.96
1899260--1899432	52	3.3	52	83	4	206	20	24	19	36	1.95
1899260--1899421	26	6.2	25	74	16	100	20	24	18	37	1.94
1905701--1905727	7	3.9	7	100	0	54	11	0	0	88	0.50
1908784--1908817	17	2.0	17	94	0	59	35	0	8	55	1.31
1909377--1909427	23	2.1	25	85	10	70	64	7	9	17	1.46
1917862--1917944	41	2.0	41	97	0	157	22	24	21	31	1.98
1924255--1924335	40	2.0	40	92	0	135	37	14	19	28	1.92
1933138--1933185	24	2.1	23	85	14	64	27	12	14	45	1.81
1938613--1938686	29	2.5	29	82	4	85	25	14	13	45	1.82
1943681--1943717	12	3.1	12	92	0	56	35	16	8	40	1.78
1949277--1949502	96	2.4	91	82	7	262	53	11	5	30	1.58
1949954--1949987	2	16.5	2	93	6	59	50	2	0	47	1.16
1952481--1952525	20	2.3	19	84	3	63	53	0	0	46	1.00
1953575--1953626	15	3.4	16	75	25	58	59	0	0	40	0.97
1953567--1953619	24	2.1	26	86	10	74	56	0	0	43	0.99
1953567--1953631	30	2.3	27	86	7	85	58	0	0	41	0.98
1953763--1953805	22	2.0	22	86	9	61	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953831--1953866	17	2.1	18	89	5	56	75	5	13	5	1.17
1954649--1954735	23	4.0	22	82	8	108	17	21	24	36	1.94
1955965--1955993	2	14.5	2	100	0	58	51	0	0	48	1.00
1962243--1962308	27	2.5	26	85	5	87	21	25	31	21	1.98
1962441--1962479	19	2.0	21	85	10	55	23	0	10	66	1.22
1962525--1962559	3	11.3	3	87	6	52	31	0	5	62	1.18
1974081--1974118	18	2.1	18	100	0	76	34	10	44	10	1.73
1976403--1976481	32	2.5	32	81	4	97	15	36	27	20	1.92
1984174--1984251	28	2.7	28	80	13	70	38	2	2	56	1.27
1984716--1984777	26	2.4	26	81	5	72	14	12	0	72	1.12
1989928--1989958	7	4.4	7	100	0	62	41	0	12	45	1.42
1990243--1990490	43	5.8	43	86	1	327	27	30	18	22	1.97
1993042--1993099	19	3.1	17	79	18	62	53	0	6	39	1.28
1993355--1993415	10	5.8	10	78	7	59	42	4	1	50	1.33
1993384--1993416	12	2.9	12	86	13	52	42	6	0	51	1.26
1993349--1993421	30	2.4	29	80	14	85	45	4	2	47	1.36
1994194--1994303	40	2.8	40	87	1	159	27	26	17	29	1.97
2002914--2002982	24	2.8	24	74	10	68	53	1	2	42	1.24
2005368--2005410	3	14.0	3	80	4	50	34	6	0	58	1.25
2005374--2005408	12	2.9	12	91	0	61	34	8	0	57	1.29
2005547--2005597	16	3.3	16	83	5	61	21	1	7	68	1.25
2005542--2005589	12	4.0	12	78	7	53	20	2	8	68	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2006226--2006250	11	2.3	11	100	0	50	64	20	8	8	1.46
2007196--2007241	5	8.6	5	83	11	56	17	2	2	78	0.96
2007196--2007241	11	4.3	10	83	10	56	17	2	2	78	0.96
2007196--2007241	16	2.9	16	83	6	58	17	2	2	78	0.96
2007281--2007362	3	28.7	3	76	7	64	35	4	1	58	1.27
2007451--2007492	2	21.0	2	90	0	66	47	2	2	47	1.28
2007761--2007826	4	17.0	4	72	12	57	22	1	6	69	1.19
2007743--2007824	24	3.5	24	76	17	82	21	2	7	68	1.26
2007877--2007914	20	1.9	20	89	10	60	28	13	0	57	1.36
2007948--2008373	219	1.9	217	86	4	606	31	16	17	34	1.92
2007963--2008376	111	3.8	107	83	6	492	31	16	17	34	1.92
2009154--2009196	3	14.3	3	95	0	77	69	0	0	30	0.88
2012678--2012724	18	2.9	16	79	14	51	36	0	4	59	1.17
2015557--2015589	12	2.8	12	90	4	50	6	18	33	42	1.75
2018967--2019004	12	3.1	12	92	3	58	42	0	57	0	0.98
2018972--2019013	18	2.3	18	87	0	57	40	0	59	0	0.97
2023505--2023571	3	23.3	3	78	14	70	34	2	1	61	1.20
2023505--2023582	27	3.2	25	80	14	83	35	3	1	58	1.24
2023505--2023582	24	3.3	24	79	15	83	35	3	1	58	1.24
2028361--2028388	14	2.0	14	100	0	56	42	14	0	42	1.45
2035060--2035112	16	3.3	16	86	0	79	22	30	5	41	1.77
2036783--2036851	24	2.8	24	74	10	68	53	1	2	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2037320--2037361	20	2.1	20	86	8	59	52	4	0	42	1.22
2037473--2037516	20	2.1	21	84	12	56	75	2	0	22	0.92
2039671--2039705	18	1.9	18	94	0	61	34	11	0	54	1.37
2039847--2039897	16	3.3	16	83	5	61	21	1	9	66	1.31
2039831--2039889	12	4.8	12	75	12	57	20	1	11	66	1.33
2056867--2056935	24	2.8	24	74	10	68	53	1	2	42	1.24
2057122--2057773	227	2.9	224	84	4	792	26	25	22	25	2.00
2057105--2057774	113	5.9	113	85	3	749	26	25	22	25	2.00
2059040--2059120	24	3.2	24	78	13	99	44	0	11	44	1.39
2059037--2059120	28	3.1	28	70	13	86	46	0	10	42	1.38
2061698--2062376	63	10.8	63	100	0	1358	41	8	7	42	1.63
2062375--2062418	23	1.9	23	95	0	79	43	18	0	38	1.50
2062398--2062496	38	2.6	39	91	1	164	40	13	0	46	1.43
2062585--2062849	9	29.8	9	73	13	210	44	21	1	31	1.63
2069230--2069298	21	3.3	21	83	0	93	36	15	43	4	1.67
2069283--2069322	12	3.3	12	89	0	62	42	17	37	2	1.63
2069757--2070113	43	8.3	43	85	5	433	25	21	21	31	1.98
2072560--2072602	3	14.0	3	80	4	50	34	6	0	58	1.25
2072566--2072600	12	2.9	12	91	0	61	34	8	0	57	1.29
2072919--2073021	30	3.5	30	85	7	131	33	22	2	40	1.69
2072931--2073057	30	4.3	30	83	10	120	34	25	3	37	1.72
2073748--2073819	27	2.7	26	76	6	81	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073748--2073817	17	3.8	19	71	14	67	72	0	27	0	0.84
2073748--2073818	10	6.7	10	74	16	63	73	0	26	0	0.84
2074111--2074146	19	1.9	18	88	5	54	25	2	2	69	1.15
2074562--2075303	17	42.8	17	67	14	198	30	13	11	44	1.78
2074556--2075268	35	20.6	35	65	16	170	30	13	11	44	1.78
2074882--2074955	38	2.0	37	89	2	112	33	16	9	40	1.80
2074899--2075101	52	3.9	51	74	9	158	30	14	11	43	1.82
2074936--2075128	105	1.8	105	82	6	248	27	15	12	44	1.83
2083726--2083929	101	2.0	102	98	0	392	31	18	27	22	1.97
2084744--2084806	31	2.0	31	96	0	117	39	11	19	30	1.86
2086219--2086285	27	2.5	27	78	4	82	73	0	26	0	0.84
2086219--2086285	10	6.3	10	72	17	55	73	0	26	0	0.84
2086218--2086281	14	4.4	14	72	20	51	70	0	29	0	0.88
2086582--2086617	19	1.9	18	88	5	54	25	2	2	69	1.15
2087080--2087126	17	2.6	18	83	10	60	38	17	6	38	1.75
2087044--2087154	18	6.2	18	75	8	91	33	14	9	43	1.77
2087270--2087692	17	24.3	18	67	13	122	30	13	12	44	1.80
2087323--2087397	38	2.0	37	92	2	123	36	16	9	38	1.80
2087270--2087519	52	4.7	52	69	8	139	30	13	10	45	1.77
2087323--2087727	17	23.1	18	67	16	147	30	14	12	42	1.82
2088108--2088158	16	3.3	16	83	5	61	21	1	9	66	1.31
2088103--2088150	12	4.0	12	78	7	53	20	2	10	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2091459--2091500	20	2.1	20	86	0	57	47	0	7	45	1.30
2093529--2093587	22	2.6	22	76	10	57	28	0	5	66	1.13
2107389--2107428	20	2.0	21	95	5	73	50	0	5	45	1.23
2108793--2108821	6	4.8	6	100	0	58	31	0	0	68	0.89
2113109--2113152	15	2.9	15	82	0	52	27	36	0	36	1.57
2115358--2115405	25	1.9	25	83	8	62	43	10	0	45	1.38
2118478--2118516	15	2.7	15	88	4	53	89	5	5	0	0.58
2123167--2123203	18	2.0	19	89	5	58	67	18	10	2	1.32
2123485--2123531	22	2.1	22	100	0	94	57	10	10	21	1.62
2129911--2129952	21	2.0	21	86	4	59	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75