genome.fa.s11.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  57  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18276159--18276222	22	2.9	22	71	17	60	43	15	21	18	1.87
18276240--18276448	32	6.5	32	79	6	185	39	23	19	17	1.92
18276242--18276451	64	3.3	64	75	10	207	39	23	19	17	1.92
18276234--18276416	96	1.9	96	86	2	260	39	22	19	18	1.92
18276241--18276448	96	2.2	96	81	6	251	39	24	19	17	1.92
18276495--18276549	27	2.1	27	87	12	80	30	20	27	21	1.98
18276621--18276676	24	2.3	23	79	8	67	42	28	10	17	1.83
18276736--18276900	27	6.1	27	79	4	154	24	16	20	38	1.93
18276736--18276900	53	3.1	53	83	1	195	24	16	20	38	1.93
18276849--18276996	27	5.5	27	76	7	122	20	19	18	41	1.91
18276931--18277009	27	2.9	27	77	3	88	22	21	15	40	1.90
18279564--18279638	20	3.8	20	70	0	78	28	20	17	34	1.95
18279601--18279650	20	2.5	20	77	6	57	32	20	10	38	1.85
18279561--18279638	40	2.0	40	86	0	111	28	20	16	34	1.94
18279582--18279771	100	1.9	98	84	4	256	24	17	20	36	1.94
18317983--18318162	50	3.6	50	81	3	168	30	22	26	21	1.99
18318566--18318616	25	2.0	25	100	0	102	27	7	19	45	1.78
18326405--18326630	82	2.8	80	81	4	242	21	20	29	29	1.98
18326427--18326625	41	4.9	40	82	4	202	19	20	30	29	1.97
18326991--18327033	21	2.1	20	91	4	68	20	0	37	41	1.53
18327061--18327109	15	3.4	14	80	8	53	26	0	38	34	1.57
18327017--18327127	7	15.7	7	72	12	57	24	0	37	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18327330--18327372	15	2.9	15	93	3	70	20	2	44	32	1.65
18327334--18327382	14	3.5	13	88	8	62	22	2	44	30	1.64
18327793--18327894	39	2.6	39	95	3	177	40	18	19	21	1.92
18330112--18330483	184	2.0	186	96	1	694	31	10	11	46	1.73
18333221--18333441	43	5.1	43	78	6	225	23	17	28	31	1.97
18333221--18333441	86	2.6	87	83	3	277	23	17	28	31	1.97
18335106--18335222	62	1.9	59	83	11	148	40	5	5	49	1.47
18335331--18335378	26	2.0	22	84	15	60	39	6	14	39	1.71
18345712--18345756	22	2.0	22	87	8	65	51	20	2	26	1.59
18350527--18350567	15	2.6	17	85	14	54	36	14	0	48	1.44
18351756--18351785	12	2.5	12	94	0	51	6	23	40	30	1.80
18353597--18353880	141	2.0	142	99	0	561	25	16	21	36	1.93
18362090--18362153	30	2.2	29	88	8	94	32	1	0	65	1.02
18362789--18362819	15	2.1	15	100	0	62	41	6	0	51	1.27
18370570--18370625	27	2.1	27	93	0	94	42	12	12	32	1.80
18371846--18371922	38	2.0	38	92	0	127	29	0	40	29	1.57
18371964--18372016	24	2.2	24	87	9	74	5	30	1	62	1.29
18384953--18385009	27	2.1	27	93	0	96	36	24	7	31	1.82
18387365--18387446	42	2.0	42	82	4	103	32	24	12	30	1.92
18390091--18390286	51	3.9	50	79	4	214	30	27	16	25	1.97
18390089--18390282	101	1.9	101	88	3	291	29	26	17	26	1.97
18395744--18395786	22	2.0	22	86	9	61	23	6	25	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18398218--18398266	26	1.9	26	83	4	64	20	24	20	34	1.96
18411225--18411261	12	3.1	12	88	0	56	21	35	27	16	1.94
18411224--18411283	24	2.5	24	83	0	75	23	41	21	13	1.88
18416741--18416774	16	2.1	16	88	0	50	55	0	0	44	0.99
18420442--18420485	22	1.9	24	86	9	65	40	9	0	50	1.34
18422541--18422593	20	2.7	20	90	0	88	35	7	9	47	1.64
18423627--18423653	3	9.0	3	100	0	54	33	33	0	33	1.58
18427586--18427629	22	1.9	24	86	9	65	40	9	2	47	1.48
18430631--18430809	77	2.3	76	87	4	245	49	7	7	34	1.61
18434081--18434277	51	3.9	50	76	6	191	29	27	17	25	1.97
18434089--18434273	101	1.8	102	87	3	275	30	26	17	25	1.97
18435707--18435929	71	3.1	71	65	16	199	42	5	5	46	1.49
18435648--18435939	142	2.1	142	95	1	523	40	6	5	47	1.53
18442723--18442790	27	2.5	26	79	11	75	51	10	10	27	1.68
18446227--18446262	17	2.1	17	89	0	54	13	27	11	47	1.77
18447054--18447136	28	2.9	28	80	7	94	28	24	22	24	1.99
18447057--18447141	30	2.9	30	85	3	111	28	22	23	25	1.99
18447251--18447353	26	4.0	26	79	2	100	35	24	23	16	1.95
18447502--18447697	27	7.3	27	78	1	196	17	18	19	43	1.88
18447503--18447697	54	3.6	53	84	4	221	17	18	18	44	1.88
18447503--18447682	81	2.2	81	84	2	229	18	18	19	43	1.89
18448377--18448430	20	2.7	20	79	2	54	55	0	38	5	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18448756--18448794	19	2.1	19	100	0	78	43	25	10	20	1.83
18451020--18451254	50	4.7	50	87	0	317	20	30	22	25	1.98
18451592--18451661	30	2.4	29	74	11	79	32	20	12	34	1.90
18458498--18458689	50	3.8	50	91	0	303	20	33	22	23	1.97
18459223--18459472	124	2.0	125	99	0	493	32	15	13	39	1.86
18460918--18460970	27	1.9	28	84	3	72	47	1	7	43	1.42
18464892--18464969	25	3.1	25	78	10	88	26	25	19	28	1.99
18468123--18468233	30	3.7	30	82	1	143	38	14	21	25	1.91
18468072--18468258	60	3.2	59	74	6	173	37	13	24	25	1.91
18468100--18468291	30	6.4	30	76	7	124	37	13	25	24	1.91
18475249--18475754	250	2.0	251	89	2	768	31	27	18	23	1.97
18476139--18476192	25	2.2	25	81	15	60	51	22	9	16	1.72
18482302--18482424	43	2.9	41	78	5	138	32	24	16	26	1.96
18491528--18491791	130	2.0	130	94	1	458	46	10	15	26	1.78
18498426--18498472	21	2.2	21	92	0	85	21	23	31	23	1.98
18498557--18498809	43	5.9	43	81	1	249	26	28	16	28	1.97
18504672--18504850	41	4.4	40	87	6	227	34	30	17	17	1.93
18506853--18506900	24	2.0	24	83	4	60	27	8	14	50	1.71
18507081--18507120	20	2.0	20	90	0	62	25	0	15	60	1.35
18521952--18521976	1	25.0	1	100	0	50	100	0	0	0	0.00
18525635--18525732	51	1.9	50	85	8	135	26	20	4	48	1.67
18527428--18527467	18	2.2	18	100	0	80	25	30	5	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18532489--18532513	5	5.0	5	100	0	50	40	0	0	60	0.97
18536227--18536264	18	2.1	18	95	0	67	18	21	28	31	1.97
18541830--18541863	16	2.1	17	94	5	61	41	11	0	47	1.40
18543342--18543396	26	2.2	26	90	3	85	23	18	23	34	1.96
18545706--18546075	27	13.7	27	81	3	370	38	19	16	25	1.92
18546220--18546322	26	4.0	26	83	5	136	14	20	25	39	1.90
18546427--18546506	30	2.7	30	84	0	106	23	26	21	28	1.99
18558661--18558729	26	2.7	26	76	0	84	23	23	28	24	1.99
18565909--18565984	26	3.0	26	88	1	109	39	9	17	34	1.81
18566973--18567014	12	3.7	12	75	12	52	42	2	2	52	1.27
18570637--18570885	129	1.9	129	82	1	311	53	14	13	18	1.72
18573055--18573099	20	2.2	20	84	7	56	53	11	4	31	1.56
18580412--18580534	65	1.9	63	85	6	167	23	4	17	53	1.63
18580420--18580547	65	2.0	65	83	9	163	25	4	15	53	1.61
18588316--18589398	541	2.0	541	100	0	2166	25	16	26	31	1.97
18599067--18599135	23	2.9	24	69	16	63	55	7	4	33	1.47
18600658--18600854	44	4.5	44	67	12	111	30	19	18	30	1.96
18600656--18600965	129	2.4	129	85	1	406	29	20	18	31	1.96
18600930--18601501	131	4.4	131	89	1	821	25	25	20	28	1.99
18600925--18601503	44	13.3	44	66	11	190	25	25	20	27	1.99
18602046--18602148	45	2.3	45	76	8	109	52	8	13	25	1.69
18602415--18602466	11	5.1	11	82	15	67	1	19	0	78	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18602415--18602455	6	6.8	6	79	20	50	0	19	0	80	0.71
18602417--18602466	5	10.0	5	79	16	59	2	18	0	80	0.82
18602417--18602453	19	1.9	19	100	0	74	0	18	0	81	0.70
18606665--18606728	30	2.1	30	88	5	94	64	3	1	31	1.19
18606672--18606735	15	4.1	15	79	6	65	64	3	3	29	1.24
18606640--18606728	3	29.3	3	76	6	72	60	2	5	31	1.32
18608483--18608528	23	1.9	25	91	8	78	45	4	0	50	1.21
18608481--18608532	23	2.3	22	81	18	63	46	3	0	50	1.20
18617077--18617210	44	3.0	44	93	3	216	31	5	27	35	1.79
18617077--18617227	44	3.5	42	88	7	175	33	4	27	34	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75