genome.fa.s11.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  27  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8103458--8103526	30	2.3	30	94	0	120	46	8	4	40	1.55
8104801--8105014	45	4.8	44	81	4	223	31	22	22	22	1.98
8104826--8105057	45	5.2	45	84	1	279	31	21	24	22	1.99
8104823--8105057	90	2.6	90	89	0	337	31	21	23	22	1.98
8105962--8106576	307	2.0	307	100	0	1230	44	9	25	20	1.82
8110265--8110379	39	3.0	38	85	2	149	16	13	31	38	1.88
8113948--8114067	22	5.5	22	75	4	62	42	19	23	15	1.88
8115053--8115092	20	2.0	21	85	5	55	52	10	0	37	1.35
8124865--8125060	101	1.9	101	95	0	356	33	16	9	40	1.80
8126105--8126140	18	2.0	18	100	0	72	61	11	11	16	1.57
8129656--8129706	20	2.6	19	87	9	75	43	15	13	27	1.85
8132756--8132805	20	2.5	20	83	6	66	42	18	14	26	1.87
8135740--8135772	17	1.9	17	93	0	57	39	15	0	45	1.46
8138896--8138928	17	1.9	17	93	0	57	24	3	0	72	0.98
8142381--8142470	44	2.0	44	89	0	135	50	5	8	35	1.57
8142438--8142471	18	1.9	18	88	5	52	55	5	2	35	1.39
8143156--8143449	146	2.0	147	99	0	581	45	5	7	41	1.55
8144945--8145134	96	2.0	97	90	1	301	36	20	8	35	1.83
8159765--8159874	42	2.6	42	94	0	184	20	33	29	16	1.95
8161051--8161103	23	2.2	25	83	6	65	32	18	26	22	1.97
8168968--8169023	24	2.3	24	87	6	78	32	25	26	16	1.96
8172945--8172981	3	12.3	3	100	0	74	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8174239--8174265	2	13.5	2	100	0	54	48	0	0	51	1.00
8177096--8177148	3	18.0	3	84	3	72	62	1	3	32	1.24
8177102--8177159	12	4.9	12	87	2	64	63	3	3	29	1.27
8178642--8179277	45	14.2	45	88	1	884	27	24	18	29	1.98
8179512--8179564	24	2.2	24	83	6	63	28	28	11	32	1.91
8187715--8188311	45	13.3	45	100	0	1194	22	11	20	46	1.81
8188755--8188807	20	2.7	19	77	16	56	54	0	1	43	1.11
8188840--8189006	43	3.9	43	82	5	160	24	16	27	31	1.97
8197069--8197142	28	2.6	29	83	12	91	62	1	1	35	1.12
8197126--8197175	20	2.6	19	87	12	75	68	0	4	28	1.08
8197263--8197328	9	6.6	10	74	10	55	30	1	1	66	1.10
8197254--8197296	20	2.2	20	83	8	52	27	2	4	65	1.25
8197263--8197367	41	2.7	39	72	17	99	32	2	1	62	1.20
8203621--8203662	3	14.0	3	89	0	66	30	2	2	64	1.19
8203831--8203867	18	2.0	19	89	5	58	40	8	0	51	1.32
8204124--8204165	3	14.0	3	89	0	66	30	2	2	64	1.19
8205868--8205947	35	2.2	37	82	8	101	32	10	2	55	1.47
8208887--8209061	30	5.9	30	71	16	114	34	23	5	37	1.77
8208941--8209022	29	2.7	30	80	12	89	34	26	4	34	1.78
8208887--8209024	30	4.7	29	74	19	115	36	23	4	35	1.75
8209593--8209631	17	2.1	17	86	13	51	64	0	33	2	1.08
8209769--8209804	10	3.5	10	88	3	54	77	0	19	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8209733--8209805	27	2.7	27	76	4	85	72	0	26	1	0.93
8209733--8209804	10	6.6	11	72	12	51	72	0	26	1	0.93
8210067--8210103	19	1.9	19	88	0	56	24	5	2	67	1.25
8210742--8210836	35	2.7	33	74	19	86	31	16	8	43	1.78
8210742--8210986	17	13.8	18	70	15	127	31	15	9	43	1.79
8210873--8210998	35	3.6	34	74	12	112	36	14	11	38	1.81
8210943--8210979	19	1.9	19	94	0	65	40	10	10	37	1.75
8211095--8211136	19	2.3	19	88	12	61	47	7	7	38	1.58
8211149--8211321	17	9.8	17	69	13	109	27	12	13	46	1.78
8211148--8211279	53	2.5	52	80	8	126	23	13	13	49	1.78
8211149--8211322	18	9.8	17	67	10	80	28	12	13	46	1.78
8211265--8211323	19	3.2	18	80	4	64	37	10	11	40	1.76
8211352--8211389	20	1.9	20	100	0	76	36	10	10	42	1.74
8211934--8212065	9	13.8	10	68	18	61	34	3	2	59	1.28
8211944--8211981	17	2.2	18	90	4	60	34	5	2	57	1.35
8211936--8212064	19	6.8	18	73	15	91	34	3	2	59	1.28
8222787--8222825	16	2.4	17	82	8	53	64	5	0	30	1.15
8223267--8223306	15	2.7	15	84	7	55	80	10	2	7	1.00
8225154--8225192	16	2.5	15	87	4	51	35	5	0	58	1.20
8234834--8234886	25	2.1	25	96	0	97	35	22	13	28	1.92
8239349--8239388	16	2.4	16	87	4	53	35	0	17	47	1.48
8245885--8246138	136	2.0	125	87	10	361	31	18	12	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8248574--8248615	17	2.4	18	80	19	61	45	0	0	54	0.99
8248581--8248624	17	2.7	17	86	10	65	45	0	2	52	1.13
8249533--8249801	17	15.2	17	76	11	204	44	11	13	30	1.78
8249533--8249802	35	7.7	35	81	8	298	44	11	13	30	1.79
8249959--8250000	21	2.1	20	86	8	59	42	9	14	33	1.78
8250165--8250192	5	5.6	5	100	0	56	64	0	0	35	0.94
8250304--8250341	14	2.6	15	95	4	69	0	15	0	84	0.63
8250709--8250768	21	3.1	20	79	11	63	0	35	0	65	0.93
8250734--8250764	12	2.7	12	95	5	55	0	25	0	74	0.82
8250962--8251108	30	4.9	30	83	4	156	40	6	17	36	1.74
8253757--8253814	30	2.1	27	81	15	66	56	13	3	25	1.53
8254238--8254277	21	1.9	22	85	10	57	22	2	2	72	1.09
8254695--8254734	21	1.9	21	94	0	71	15	12	30	42	1.83
8265325--8265356	15	2.1	15	100	0	64	28	31	12	28	1.93
8265941--8265985	18	2.5	18	92	0	72	2	60	0	37	1.09
8267401--8267458	30	1.9	30	92	0	98	39	20	12	27	1.88
8268598--8268637	20	2.0	20	90	0	62	50	7	10	32	1.64
8268586--8268652	34	1.9	35	90	3	109	46	10	8	34	1.70
8268784--8268859	40	1.9	39	81	7	91	7	28	1	61	1.32
8279094--8279162	33	2.1	33	94	0	120	34	8	30	26	1.86
8293401--8293426	7	3.7	7	100	0	52	38	0	0	61	0.96
8293494--8293608	60	1.9	60	90	0	185	33	0	13	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8293948--8294044	46	2.1	46	98	0	185	45	14	7	32	1.72
8296160--8296239	33	2.4	33	85	4	108	16	41	15	27	1.88
8296464--8296519	28	2.0	28	82	3	67	30	7	7	55	1.54
8312308--8312395	35	2.5	35	78	7	106	30	25	18	26	1.98
8317293--8317326	17	2.0	17	88	0	50	29	0	0	70	0.87
8317323--8317364	11	3.9	11	76	17	52	42	2	0	54	1.13
8317332--8317371	21	1.9	21	89	0	62	40	2	0	57	1.12
8317359--8317416	28	2.1	27	87	9	91	46	0	10	43	1.38
8321070--8321153	42	2.0	42	90	0	132	45	23	17	13	1.84
8326106--8326142	19	1.9	19	94	0	65	24	13	27	35	1.93
8326370--8326644	37	7.9	37	67	27	149	44	2	3	49	1.35
8326389--8326673	68	4.2	68	100	0	570	44	2	4	48	1.36
8329618--8329682	31	2.1	31	86	11	89	23	18	7	50	1.72
8332938--8333064	60	2.1	60	88	0	182	37	10	14	37	1.81
8335203--8335256	19	2.8	19	94	0	99	37	9	16	37	1.81
8335192--8335263	38	2.0	36	84	10	94	37	9	16	36	1.82
8335203--8335279	38	1.9	40	87	10	113	36	7	16	38	1.78
8339811--8339836	7	3.7	7	100	0	52	30	0	26	42	1.56
8342881--8342977	45	2.2	45	85	5	126	35	26	4	34	1.76
8342964--8343005	16	2.6	16	84	0	66	21	33	4	40	1.74
8344692--8344717	12	2.2	12	100	0	52	0	15	0	84	0.62
8344993--8345335	172	2.0	172	99	0	677	43	6	8	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8354679--8354733	11	4.9	11	77	16	60	27	29	0	43	1.55
8354795--8354826	16	2.0	16	93	0	55	59	0	0	40	0.97
8355196--8355248	27	2.0	27	100	0	106	22	18	22	35	1.95
8357140--8357189	14	3.6	14	76	12	59	44	34	0	22	1.53
8357168--8357887	22	33.0	22	71	11	443	46	28	0	25	1.55
8357140--8357198	28	2.1	28	93	0	100	44	35	0	20	1.52
8357146--8357195	15	3.5	15	76	20	61	44	36	0	20	1.52
8357168--8357887	87	8.2	85	75	11	378	46	28	0	25	1.55
8357497--8357639	14	9.8	15	65	14	57	46	30	0	23	1.53
8357515--8357620	7	14.7	7	74	13	63	45	33	0	21	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75