genome.fa.s11.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  11  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3032133--3032157	12	2.1	12	100	0	50	76	0	0	24	0.80
3033700--3034121	44	9.5	44	78	3	346	27	19	18	34	1.95
3033700--3034121	133	3.2	133	77	4	377	27	19	18	34	1.95
3033731--3034121	89	4.4	87	76	5	354	27	19	17	34	1.95
3048957--3048987	15	2.0	15	93	6	53	19	0	0	80	0.71
3048939--3048987	21	2.3	22	85	3	64	20	0	6	73	1.04
3052733--3052776	23	1.9	23	85	0	61	45	9	13	31	1.75
3054906--3054933	13	2.2	13	100	0	56	14	39	7	39	1.73
3057160--3057448	144	2.0	145	93	0	499	33	10	21	34	1.88
3061134--3061237	52	2.0	52	98	0	199	21	13	22	43	1.87
3063217--3063253	3	12.3	3	100	0	74	32	0	0	67	0.91
3064152--3064220	33	2.1	33	100	0	138	42	21	5	30	1.76
3074320--3074371	24	2.2	24	92	0	86	51	7	1	38	1.42
3074707--3074740	15	2.3	15	90	5	52	29	0	0	70	0.87
3076718--3076755	20	1.9	20	89	10	60	39	18	0	42	1.50
3079538--3079611	28	2.6	28	97	0	139	22	21	25	29	1.99
3079557--3079653	28	3.1	33	81	11	89	21	22	25	29	1.99
3082525--3083335	2	405.5	2	100	0	1622	49	50	0	0	1.00
3083335--3083394	2	30.0	2	93	0	102	0	53	0	46	1.00
3123073--3123534	27	17.2	27	83	1	525	39	23	18	19	1.92
3127789--3127820	10	3.2	10	95	0	55	43	0	6	50	1.27
3128122--3128179	3	19.3	3	92	0	98	65	1	1	31	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3129711--3130272	44	12.8	46	68	15	244	28	22	19	29	1.98
3129716--3130011	87	3.4	87	73	12	300	28	22	19	28	1.98
3129695--3130102	175	2.3	175	97	0	771	28	22	20	29	1.98
3129938--3130231	129	2.3	129	92	0	480	29	22	18	29	1.97
3139637--3139694	3	19.3	3	96	0	107	67	1	0	31	1.01
3149053--3149104	24	2.2	24	92	0	86	51	7	1	38	1.42
3149437--3149470	15	2.3	15	90	5	52	29	0	0	70	0.87
3162730--3162867	69	2.0	69	100	0	276	36	11	13	39	1.80
3165025--3165057	7	4.6	7	92	7	57	30	0	3	66	1.06
3167378--3167410	16	2.0	17	88	5	50	63	18	12	6	1.48
3168874--3168940	32	2.1	32	94	0	116	40	7	26	25	1.82
3175011--3175099	30	3.0	30	96	0	160	30	22	8	38	1.85
3175314--3175345	12	2.7	12	95	0	55	12	34	18	34	1.89
3175308--3175339	9	3.6	9	95	0	55	12	34	18	34	1.89
3179466--3179540	36	2.1	36	87	2	107	6	10	5	77	1.12
3179466--3179533	28	2.4	29	73	11	70	5	11	4	77	1.08
3179494--3179559	21	3.1	21	78	6	71	9	7	6	77	1.13
3186584--3186952	124	2.9	125	76	8	347	47	25	4	22	1.69
3190224--3190349	62	2.0	62	100	0	252	26	27	17	27	1.98
3200258--3200302	17	2.6	17	80	16	56	75	0	6	17	1.01
3200765--3200995	113	2.1	107	88	7	347	28	17	11	42	1.84
3201213--3201424	116	1.8	116	82	7	277	34	11	7	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203020--3203135	51	2.2	52	80	4	128	37	16	7	38	1.77
3206023--3206158	51	2.7	50	80	6	139	36	16	6	39	1.75
3207025--3207396	124	3.0	125	80	6	351	23	4	24	47	1.69
3210238--3210595	124	2.8	125	80	7	404	47	25	3	23	1.68
3211988--3212028	19	2.2	18	86	4	55	48	4	4	41	1.46
3216523--3216566	23	1.9	23	81	9	54	38	2	2	56	1.24
3219552--3219626	36	2.1	35	83	11	91	62	1	6	29	1.29
3219552--3219648	35	2.7	35	80	10	108	62	1	7	28	1.28
3219739--3219793	8	6.5	8	78	12	56	21	3	0	74	0.97
3222605--3222773	91	1.9	90	81	3	205	29	18	17	34	1.94
3228168--3228199	11	2.9	11	95	0	55	59	9	6	25	1.52
3228418--3228449	17	1.9	16	93	6	55	9	18	6	65	1.42
3235272--3235362	39	2.2	41	90	5	141	54	6	1	37	1.34
3237037--3237079	20	2.2	20	91	0	68	53	0	16	30	1.43
3239643--3239712	4	17.5	4	96	0	131	51	22	0	25	1.48
3239818--3239860	12	3.6	12	77	0	50	32	0	18	48	1.48
3250948--3251004	23	2.5	23	94	0	96	24	24	31	19	1.98
3252675--3252712	18	2.1	18	100	0	76	50	23	5	21	1.69
3271539--3271590	23	2.1	26	82	13	65	63	9	7	19	1.48
3274337--3274430	49	1.9	49	89	4	145	20	27	17	35	1.94
3276974--3277044	28	2.7	24	76	19	70	33	1	2	61	1.19
3276982--3277039	28	2.0	31	86	10	86	36	1	3	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3284700--3284728	15	1.9	15	100	0	58	27	17	0	55	1.42
3284735--3284792	28	2.0	31	86	10	86	36	3	3	56	1.33
3285423--3285471	4	12.2	4	100	0	98	24	0	26	48	1.51
3286024--3286085	32	1.9	33	86	3	90	32	9	3	54	1.49
3287173--3287267	49	1.9	49	95	0	172	17	30	18	32	1.95
3294321--3294351	15	2.1	15	93	0	53	38	3	32	25	1.72
3297645--3297756	57	2.0	57	94	0	197	29	25	23	22	1.99
3298560--3298590	15	2.1	15	93	0	53	38	3	32	25	1.72
3302388--3302473	42	2.0	43	97	2	165	38	9	12	39	1.76
3308160--3308214	16	3.4	16	87	5	76	32	21	5	40	1.76
3312066--3312291	109	2.1	110	96	0	418	53	12	4	29	1.59
3312332--3312757	105	4.3	97	78	13	436	53	15	1	28	1.53
3316353--3316578	3	75.3	3	100	0	452	0	0	33	66	0.92
3317990--3318027	2	19.0	2	100	0	76	50	0	0	50	1.00
3318615--3318675	3	20.3	3	100	0	122	0	0	32	67	0.91
3321607--3321677	33	2.1	35	86	5	101	26	7	18	47	1.74
3328410--3328591	91	2.0	91	97	0	346	32	15	18	32	1.92
3333244--3333325	18	5.0	18	78	13	72	67	2	3	26	1.20
3333234--3333325	7	11.9	7	70	25	53	67	2	3	27	1.18
3333241--3333324	8	10.4	8	75	15	75	69	2	3	25	1.17
3333265--3333325	23	2.6	24	82	7	81	70	0	3	26	1.02
3348499--3348544	23	2.0	24	91	4	76	19	17	13	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3348642--3348699	24	2.5	23	82	2	71	25	15	17	41	1.89
3348642--3348712	23	3.0	23	81	2	79	26	14	16	42	1.87
3350228--3350264	18	2.2	18	85	9	51	21	8	0	70	1.13
3360228--3360274	21	2.2	22	92	3	78	21	38	19	21	1.94
3367928--3367967	17	2.3	18	95	4	73	30	0	22	47	1.52
3369868--3369956	45	2.0	45	97	0	169	51	22	2	23	1.59
3371143--3371557	207	2.0	207	99	0	812	23	13	32	29	1.94
3372948--3373024	14	5.0	15	71	20	52	42	14	9	33	1.77
3372964--3373003	20	2.0	20	90	0	62	50	12	10	27	1.72
3372952--3373018	34	1.9	35	90	3	109	46	13	8	31	1.74
3376893--3376917	9	2.8	9	100	0	50	44	0	0	56	0.99
3386872--3386912	17	2.4	17	81	18	50	34	4	0	60	1.18
3388033--3388068	17	2.0	17	89	10	54	19	2	11	66	1.35
3398165--3398190	4	6.5	4	100	0	52	23	0	0	76	0.78
3399230--3399389	41	3.9	41	89	0	239	31	28	23	17	1.97
3399464--3399558	40	2.4	40	83	0	118	20	17	22	40	1.92
3403778--3403825	19	2.7	19	78	18	59	20	14	16	47	1.82
3420735--3420974	128	1.9	128	97	0	453	36	13	17	32	1.89
3423002--3423349	174	2.0	175	86	4	488	23	11	20	44	1.83
3429692--3430039	174	2.0	175	84	4	461	23	11	20	44	1.84
3434396--3434494	32	3.1	32	85	4	128	39	10	12	38	1.76
3441399--3441604	102	2.0	103	99	0	405	39	2	8	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3442396--3442474	36	2.2	36	93	0	131	49	18	10	21	1.77
3448820--3448855	4	9.0	4	93	0	63	27	0	22	50	1.50
3451340--3451619	141	2.0	140	97	0	524	41	10	10	37	1.73
3452057--3452096	19	2.2	18	90	4	62	37	0	5	57	1.21
3452056--3452105	19	2.6	19	75	12	57	40	0	4	56	1.18
3452171--3452215	21	2.1	21	83	0	54	60	2	0	37	1.09
3454324--3454368	2	23.0	2	86	13	67	46	0	2	51	1.13
3455601--3455659	31	2.0	30	86	6	84	45	15	6	32	1.72
3455596--3455662	31	2.3	27	80	14	80	43	13	7	35	1.72
3457053--3457651	299	2.0	299	100	0	1198	35	10	21	32	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75