genome.fa.s11.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  41  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13079474--13079513	21	1.9	21	84	0	53	35	12	22	30	1.91
13088633--13088671	11	3.5	11	92	0	69	33	5	0	61	1.18
13096642--13096682	22	2.0	20	85	9	55	41	4	19	34	1.73
13097984--13098296	43	7.3	43	88	0	430	25	29	18	26	1.98
13106681--13106719	9	4.3	9	90	0	60	30	2	12	53	1.52
13109247--13109275	15	1.9	15	100	0	58	68	3	13	13	1.33
13109294--13109324	14	2.1	15	94	5	55	45	0	16	38	1.47
13114931--13114961	1	31.0	1	100	0	62	0	0	0	100	0.00
13116340--13116373	18	1.9	18	88	5	52	76	0	14	8	1.01
13123647--13123708	23	2.6	24	89	2	99	43	6	1	48	1.38
13127125--13127151	14	1.9	14	100	0	54	14	22	14	48	1.81
13129878--13130018	64	2.2	64	93	0	237	36	16	11	35	1.84
13135309--13135352	23	1.9	23	100	0	88	25	13	18	43	1.86
13138551--13138580	2	15.0	2	100	0	60	50	0	50	0	1.00
13146645--13146669	9	2.8	9	100	0	50	24	12	24	40	1.88
13160607--13160656	5	10.0	5	91	8	84	40	0	0	60	0.97
13160712--13160787	37	2.0	38	82	12	93	50	1	2	46	1.24
13160875--13160927	10	5.0	10	73	13	52	33	9	1	54	1.43
13162775--13162822	9	5.3	9	79	0	51	56	14	4	25	1.56
13162785--13162822	18	2.1	18	90	0	58	57	15	2	23	1.51
13162818--13162905	45	2.0	45	95	0	158	44	25	3	27	1.70
13180150--13180241	44	2.0	44	85	10	121	43	4	2	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13192229--13192263	13	2.7	13	90	0	52	34	2	0	62	1.10
13192373--13192453	35	2.4	33	79	6	83	29	13	6	50	1.66
13192471--13192535	33	1.9	34	87	3	96	29	7	1	61	1.33
13206358--13206680	45	7.2	45	89	2	454	30	17	24	28	1.97
13206438--13206741	135	2.3	135	81	5	312	30	20	23	25	1.98
13208513--13208600	40	2.2	39	83	4	104	39	17	22	20	1.92
13208523--13208600	39	2.0	39	84	2	102	39	16	23	20	1.92
13208906--13208938	14	2.3	15	94	5	59	30	0	33	36	1.58
13208962--13209015	21	2.6	21	79	5	56	24	0	40	35	1.55
13209085--13209139	7	8.0	7	75	17	53	16	1	43	38	1.58
13209092--13209139	13	3.6	13	78	13	53	16	2	43	37	1.60
13210716--13210748	6	5.7	6	96	3	59	15	0	0	84	0.61
13210964--13211016	24	2.2	24	96	0	97	41	7	7	43	1.61
13213336--13213405	31	2.3	31	95	2	124	22	17	22	37	1.94
13213914--13213973	18	3.4	18	64	13	52	43	6	10	40	1.64
13214160--13214291	43	3.1	42	77	5	124	25	18	26	29	1.98
13214333--13214392	13	4.6	13	70	15	52	31	8	1	58	1.38
13214355--13214409	24	2.3	23	75	9	56	29	7	1	61	1.33
13219449--13219490	21	2.0	21	90	0	66	23	0	2	73	0.94
13219469--13219507	14	2.7	14	88	4	51	25	0	7	66	1.18
13219803--13219836	17	1.9	18	88	5	52	73	2	2	20	1.09
13230141--13230291	75	2.0	75	92	0	248	43	23	8	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13230711--13230786	31	2.5	31	88	0	116	43	17	13	26	1.85
13232233--13232268	18	2.0	18	100	0	72	44	11	5	38	1.63
13236346--13236390	17	2.5	19	78	14	58	6	44	28	20	1.76
13237609--13237761	40	3.8	41	76	10	138	37	22	20	19	1.94
13237631--13237778	79	1.9	80	80	7	176	37	26	18	17	1.93
13237810--13238037	41	5.6	41	89	3	307	22	21	24	30	1.99
13239100--13239155	7	8.1	7	76	11	53	21	1	37	39	1.64
13239774--13240115	164	2.1	163	95	2	614	43	10	14	31	1.79
13253687--13253802	6	19.8	6	76	11	53	69	6	8	14	1.34
13253686--13253772	34	2.5	35	81	7	90	72	6	6	13	1.26
13253785--13253835	18	2.6	21	76	20	56	68	0	21	9	1.18
13255566--13255703	43	3.2	43	62	17	104	28	24	21	24	1.99
13255507--13255784	87	3.2	87	94	1	470	29	22	23	25	1.99
13256168--13256386	40	5.3	40	77	10	219	31	21	22	24	1.98
13258055--13258106	12	4.3	12	80	4	52	30	1	5	61	1.30
13258065--13258115	3	17.0	3	83	0	66	31	3	3	60	1.33
13258750--13259061	108	2.8	109	86	3	421	31	16	20	32	1.95
13263125--13263422	86	3.5	86	82	6	345	25	18	29	25	1.98
13263127--13263422	43	6.9	43	81	3	310	25	18	30	25	1.98
13278216--13278249	14	2.5	14	95	4	61	55	0	17	26	1.42
13278762--13278857	41	2.4	40	83	1	120	27	12	23	36	1.91
13282800--13282907	41	2.7	41	86	2	148	25	18	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13284561--13284696	40	3.4	39	74	9	123	33	23	16	26	1.96
13286892--13286929	12	3.1	12	96	3	67	18	31	23	26	1.97
13287885--13288025	40	3.6	38	80	7	149	34	21	17	26	1.96
13287913--13288025	38	2.8	40	81	6	149	35	22	18	23	1.96
13288877--13288933	4	13.8	4	77	17	55	5	19	1	73	1.11
13288967--13289003	18	2.1	18	89	0	56	45	2	0	51	1.15
13288980--13289028	2	26.5	2	84	15	70	51	0	0	48	1.00
13294046--13294198	47	3.3	47	89	0	243	48	19	11	20	1.79
13299187--13299230	22	1.9	24	90	9	74	25	20	0	54	1.45
13299608--13299636	15	1.9	15	100	0	58	0	10	6	82	0.83
13300295--13300321	6	4.5	6	100	0	54	29	0	0	70	0.88
13311628--13311697	28	2.5	28	88	4	106	38	8	1	51	1.41
13311698--13311743	8	5.6	8	82	14	51	84	10	2	2	0.79
13311709--13311740	16	1.9	17	93	6	57	87	6	3	3	0.73
13311771--13311849	27	2.9	27	90	0	122	26	27	31	13	1.94
13318077--13318145	27	2.5	28	88	4	106	46	1	10	42	1.46
13318627--13318694	29	2.3	30	87	10	95	39	1	0	58	1.07
13318643--13318688	20	2.3	18	80	20	56	34	2	0	63	1.07
13320177--13320217	17	2.5	16	88	4	55	68	4	2	24	1.22
13320276--13320445	90	1.9	91	82	1	216	29	14	18	38	1.90
13322655--13322809	42	3.7	42	80	3	168	16	23	16	43	1.87
13322655--13322811	63	2.5	63	75	2	163	16	23	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13322676--13322826	21	7.3	21	72	4	110	15	23	17	43	1.87
13328955--13329625	335	2.0	334	97	1	1281	44	11	17	26	1.82
13329908--13330064	42	3.7	42	77	3	145	17	23	14	43	1.86
13332455--13332607	47	3.2	47	91	0	252	53	0	7	38	1.30
13332437--13332609	94	1.8	94	88	4	269	52	0	8	39	1.31
13332660--13332721	24	2.6	23	89	7	88	54	3	4	37	1.38
13334718--13334759	23	1.9	22	85	9	59	52	4	4	38	1.44
13335699--13335761	30	2.1	30	93	0	108	28	3	12	55	1.52
13339898--13339953	27	2.1	27	93	0	94	53	7	8	30	1.59
13340464--13340489	5	5.2	5	100	0	52	80	0	0	19	0.71
13342355--13342443	44	2.0	44	97	0	169	33	3	30	32	1.74
13349707--13349813	27	4.0	27	73	18	75	61	0	2	35	1.10
13349680--13349807	22	6.0	22	69	18	74	60	0	4	34	1.23
13349707--13349818	53	2.1	53	83	12	140	61	0	2	35	1.10
13349749--13349822	17	4.1	17	71	19	60	63	0	2	33	1.09
13353902--13353930	13	2.1	14	93	6	51	27	13	0	58	1.36
13360453--13360540	18	4.7	18	71	15	72	21	1	3	73	1.04
13360453--13360540	13	7.2	11	72	21	54	21	1	3	73	1.04
13360569--13360609	12	3.5	12	83	6	57	24	9	2	63	1.37
13360644--13360708	6	10.5	6	77	12	51	10	6	6	76	1.13
13361655--13361698	21	2.1	21	100	0	88	27	13	4	54	1.58
13364084--13364161	19	4.1	19	81	6	86	58	2	1	37	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13364102--13364182	19	4.2	20	79	9	96	62	1	0	35	1.03
13364084--13364238	39	4.2	39	71	18	132	57	3	3	35	1.33
13364151--13364185	15	2.4	15	85	4	54	68	0	0	31	0.90
13364777--13364811	15	2.2	16	95	5	63	14	0	20	65	1.26
13375188--13375239	27	1.9	27	96	0	95	40	17	23	19	1.91
13375857--13375906	18	2.8	18	75	0	55	72	0	0	28	0.86
13381127--13381199	3	23.7	3	83	5	92	61	1	4	32	1.23
13386757--13386788	16	2.0	16	93	0	55	50	3	6	40	1.43
13395542--13395605	27	2.2	31	81	13	75	64	3	0	32	1.10
13402784--13402809	3	8.7	3	100	0	52	34	0	30	34	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75