genome.fa.s11.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  52  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16652974--16653005	17	1.9	17	93	6	57	18	0	37	43	1.51
16653002--16653308	23	12.9	23	78	13	309	24	3	21	50	1.63
16653002--16653308	46	6.4	46	81	6	353	24	3	21	50	1.63
16653002--16653308	69	4.3	70	83	7	361	24	3	21	50	1.63
16654483--16654522	18	2.2	18	90	0	62	40	5	30	25	1.77
16655764--16655803	18	2.2	18	90	0	62	40	5	30	25	1.77
16656642--16656679	20	1.9	20	84	10	51	55	7	2	34	1.43
16659051--16659530	156	3.1	153	85	3	633	35	14	20	30	1.92
16662640--16662815	59	3.0	59	90	1	255	51	9	6	32	1.59
16668798--16669026	113	2.0	113	95	0	413	26	25	15	32	1.95
16673389--16673436	17	2.8	17	78	9	53	79	6	6	8	1.07
16673587--16673971	191	2.0	192	99	0	763	43	19	8	28	1.80
16698766--16698832	22	3.2	20	76	16	64	1	10	10	77	1.06
16698752--16698809	30	2.0	29	86	10	82	1	15	12	70	1.24
16700602--16700626	7	3.6	7	100	0	50	28	0	12	60	1.32
16701261--16701295	18	1.9	18	88	0	52	25	34	8	31	1.86
16701698--16701766	25	2.7	25	86	2	102	46	2	11	39	1.55
16701762--16701920	18	9.7	18	73	19	143	47	23	0	28	1.52
16701762--16701920	64	2.5	64	80	9	173	47	23	0	28	1.52
16701769--16701902	47	2.9	46	94	2	232	46	24	0	29	1.53
16702092--16702485	29	14.2	29	72	16	234	45	26	0	26	1.57
16702121--16702423	47	6.2	47	87	8	412	45	25	0	27	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16702150--16702324	18	10.9	18	66	23	106	48	22	0	29	1.55
16702121--16702423	93	3.1	94	89	7	421	45	25	0	27	1.58
16702121--16702423	140	2.1	145	86	9	420	45	25	0	27	1.58
16702308--16702488	58	3.1	58	88	2	276	44	28	0	27	1.59
16702308--16702488	87	2.1	86	87	3	265	44	28	0	27	1.59
16705117--16705154	17	2.2	18	85	4	51	44	0	0	55	0.99
16724401--16724461	25	2.4	26	88	2	88	37	16	13	32	1.87
16724401--16724475	25	2.9	25	82	4	78	38	14	16	30	1.88
16730255--16730294	6	6.8	6	94	2	64	65	0	20	15	1.28
16730460--16730530	26	2.7	26	86	0	97	40	9	18	30	1.83
16732824--16732856	11	2.7	13	90	9	52	42	6	0	51	1.26
16732736--16732975	124	1.8	125	84	10	320	28	18	13	39	1.89
16737849--16737893	18	2.5	18	78	7	56	37	2	20	40	1.65
16738227--16738275	25	2.0	25	83	0	62	36	14	18	30	1.90
16751625--16751914	98	3.0	98	94	0	499	28	10	23	36	1.89
16763231--16763794	45	12.9	43	70	17	301	29	19	23	27	1.98
16763225--16763796	218	2.6	216	90	1	874	29	20	23	27	1.99
16765750--16765941	98	2.0	98	92	0	321	28	11	23	36	1.90
16769135--16769206	12	6.1	12	67	15	51	79	5	5	9	1.06
16769135--16769206	29	2.4	30	77	9	85	79	5	5	9	1.06
16770474--16770887	87	4.8	87	91	0	657	30	22	23	23	1.99
16771139--16771263	44	2.8	44	79	2	144	30	22	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16774415--16774464	24	2.1	24	85	7	66	44	2	0	54	1.11
16780255--16780288	17	1.9	18	88	5	52	29	11	11	47	1.76
16781226--16781270	18	2.5	18	100	0	90	31	0	15	53	1.43
16785185--16785213	14	2.1	14	100	0	58	27	6	13	51	1.66
16787228--16787298	29	2.4	30	88	2	99	18	25	14	42	1.87
16796057--16796108	21	2.4	21	80	3	59	21	28	7	42	1.80
16798502--16798739	50	4.6	50	81	5	208	26	20	29	23	1.99
16798993--16799020	12	2.3	12	100	0	56	57	7	17	17	1.62
16805507--16805545	12	3.2	12	85	0	51	20	23	5	51	1.67
16822347--16822439	42	2.2	42	84	1	123	31	17	22	29	1.96
16823216--16823289	34	2.1	34	85	9	96	22	14	20	41	1.89
16823190--16823289	36	2.9	34	78	8	103	24	13	20	43	1.86
16823277--16823406	69	1.9	68	83	1	170	27	13	17	40	1.88
16838893--16838947	28	2.0	28	88	0	83	25	25	16	32	1.96
16846220--16846307	27	3.3	25	78	13	86	46	20	13	19	1.83
16846636--16846745	28	4.0	28	77	1	105	20	25	22	30	1.98
16849299--16849384	42	2.0	43	90	2	138	24	17	25	32	1.97
16849305--16849418	42	2.7	41	80	2	120	26	18	24	30	1.98
16850244--16850468	69	3.3	69	89	0	324	25	15	16	42	1.88
16850257--16850364	34	3.1	34	63	25	82	28	14	15	40	1.87
16857837--16857862	13	2.0	13	100	0	52	38	15	23	23	1.92
16860661--16860711	23	2.2	23	89	0	75	31	7	17	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16873955--16874006	25	2.1	24	85	3	68	51	1	1	44	1.23
16875779--16875820	20	2.0	21	86	13	61	38	19	16	26	1.92
16889395--16889492	36	2.7	36	91	0	160	41	18	20	19	1.90
16890139--16890191	17	3.2	16	76	12	54	37	9	15	37	1.79
16891098--16891219	56	2.2	56	82	5	140	22	18	27	31	1.97
16893872--16894113	129	1.9	128	83	2	315	24	27	14	34	1.93
16896891--16896929	16	2.4	17	79	12	55	48	2	0	48	1.15
16897397--16897430	2	16.5	2	87	6	50	52	2	0	44	1.16
16898772--16898944	75	2.3	76	83	4	208	23	24	23	28	1.99
16901742--16901781	20	2.0	20	95	5	71	32	2	0	65	1.06
16901733--16901788	20	2.7	21	86	5	69	35	1	0	62	1.06
16921361--16921488	21	6.1	21	69	0	69	17	23	16	42	1.88
16921361--16921488	42	3.1	42	81	3	143	17	23	16	42	1.88
16921427--16921503	21	3.7	21	69	0	64	16	25	16	40	1.90
16921381--16921503	42	2.9	42	84	2	140	16	24	16	43	1.87
16922006--16922051	23	2.0	23	100	0	92	39	4	26	30	1.75
16923278--16923306	12	2.4	12	100	0	58	27	10	27	34	1.89
16929485--16929541	28	2.0	28	96	0	105	52	10	8	28	1.65
16929499--16929545	13	3.5	13	77	11	58	57	12	4	25	1.54
16930555--16930606	20	2.6	20	81	6	61	23	23	1	51	1.58
16930575--16930604	15	1.9	16	93	6	53	20	23	3	53	1.60
16942932--16943120	41	4.6	41	89	0	252	29	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16953434--16953467	16	2.1	16	88	0	50	47	8	2	41	1.50
16953894--16953987	29	3.3	29	95	1	172	47	10	21	20	1.79
16956056--16956130	29	2.5	30	82	2	98	45	14	6	33	1.71
16963050--16963469	201	2.1	203	89	2	632	34	11	12	41	1.79
16963663--16963941	148	1.9	148	91	1	461	25	7	18	48	1.75
16966042--16966069	14	2.0	14	100	0	56	35	0	21	42	1.53
16971264--16971301	15	2.4	17	86	8	53	68	2	0	28	1.03
16974060--16974347	126	2.4	118	85	9	365	30	11	10	47	1.72
16975198--16975240	16	2.7	16	85	10	61	34	44	0	20	1.52
16976176--16976234	7	7.9	7	75	14	55	32	47	0	20	1.50
16976186--16976286	15	6.8	15	74	12	57	37	42	0	19	1.52
16976187--16976236	23	2.1	24	92	3	84	36	48	0	16	1.46
16976253--16976300	14	3.4	14	80	5	51	45	35	0	18	1.50
16976596--16976766	41	4.2	41	83	3	191	28	28	21	21	1.98
16979492--16979563	28	2.6	28	95	4	128	40	9	0	50	1.36
16979927--16979952	3	8.7	3	100	0	52	0	0	30	69	0.89
16979971--16980059	40	2.3	41	83	13	116	31	4	12	51	1.59
16986390--16986455	29	2.3	30	80	17	70	0	31	0	68	0.90
16986587--16986619	13	2.5	13	100	0	66	6	6	18	69	1.30
16986618--16986689	27	2.7	26	81	8	92	47	0	6	45	1.29
16989157--16989214	30	1.9	30	93	6	100	32	22	0	44	1.53
16992323--16992356	17	2.0	17	88	0	50	35	2	8	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16992944--16992969	5	5.2	5	100	0	52	42	19	19	19	1.90
16993524--16993583	30	2.0	31	86	3	86	40	0	40	20	1.52
16993796--16993832	9	4.1	9	92	0	65	29	10	13	45	1.77
16996574--16996613	14	2.9	14	84	0	53	32	7	17	42	1.77
16998770--16998795	11	2.4	11	100	0	52	61	15	0	23	1.33
16998972--16999028	14	4.3	14	72	20	50	61	3	31	3	1.30
16999091--16999134	18	2.4	19	88	3	63	43	0	54	2	1.12
16999778--16999840	30	2.1	30	93	0	108	57	17	3	22	1.54
17004086--17004144	29	2.0	30	86	3	84	50	5	8	35	1.55
17004395--17004426	5	6.2	5	92	7	55	21	0	0	78	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75