genome.fa.s11.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  40  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12739576--12739609	17	1.9	18	88	5	52	61	0	14	23	1.33
12739700--12739742	21	2.0	21	86	8	61	37	2	6	53	1.41
12739982--12740044	21	3.0	21	71	8	58	26	3	0	69	1.03
12740018--12740052	16	2.2	16	90	5	54	34	0	0	65	0.93
12749803--12749836	17	1.9	18	88	5	52	61	0	14	23	1.33
12749927--12749969	21	2.0	21	86	8	61	37	2	6	53	1.41
12750209--12750271	21	3.0	21	71	8	58	26	3	0	69	1.03
12750245--12750279	16	2.2	16	90	5	54	34	0	0	65	0.93
12750509--12750584	35	2.1	36	85	7	102	47	5	3	43	1.44
12752434--12752491	22	2.7	21	81	7	71	34	3	18	43	1.68
12752463--12753125	329	2.0	329	97	1	1240	22	15	20	41	1.89
12757910--12757967	22	2.7	21	81	7	71	34	3	18	43	1.68
12759796--12759865	24	3.0	24	85	2	88	64	8	1	25	1.30
12759796--12759865	3	23.7	3	75	8	63	64	8	1	25	1.30
12759801--12759885	24	3.6	24	80	4	75	62	8	2	27	1.36
12760505--12760537	13	2.6	13	90	4	50	69	0	9	21	1.15
12764484--12764532	25	2.0	25	95	0	89	46	14	12	26	1.79
12766951--12766984	17	2.1	16	88	5	50	70	0	14	14	1.17
12768182--12768225	17	2.5	18	77	3	54	4	6	9	79	1.04
12768453--12768490	12	3.0	13	84	7	51	63	0	0	36	0.95
12768454--12768494	13	3.2	13	86	6	57	65	0	0	34	0.93
12787941--12788096	42	3.7	42	85	0	177	39	18	10	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12790140--12790557	126	3.3	126	96	0	737	32	19	21	26	1.97
12793805--12793852	23	2.1	23	84	0	60	41	35	4	18	1.70
12794960--12795008	3	16.3	3	100	0	98	32	0	0	67	0.91
12796555--12796594	21	1.9	21	84	0	53	5	22	45	27	1.73
12797451--12797475	7	3.6	7	100	0	50	56	16	0	28	1.41
12798617--12798664	11	4.4	11	80	17	55	41	0	35	22	1.54
12798625--12798667	10	4.0	10	82	14	50	44	0	32	23	1.54
12799056--12799151	33	3.1	33	62	25	82	46	5	4	43	1.45
12810631--12810674	18	2.2	20	84	11	56	38	0	4	56	1.20
12811461--12811499	12	3.4	11	86	10	51	30	0	0	69	0.89
12813224--12813267	5	8.8	5	89	0	61	40	0	11	47	1.39
12813224--12813278	10	5.4	10	89	4	65	40	0	9	50	1.34
12813223--12813278	15	3.7	15	85	2	67	39	0	8	51	1.33
12813223--12813278	5	11.0	5	88	3	58	39	0	8	51	1.33
12813366--12813418	5	11.2	5	86	9	76	39	0	0	60	0.97
12814056--12814195	69	2.0	69	91	0	226	25	13	25	35	1.93
12819389--12819430	16	2.5	17	77	18	52	30	0	0	69	0.89
12834263--12834323	18	3.4	18	68	8	52	19	26	29	24	1.99
12834264--12834346	36	2.3	36	89	0	130	21	28	26	22	1.99
12834282--12834343	18	3.5	17	75	16	63	24	27	25	22	2.00
12834487--12834539	24	2.2	24	86	0	70	33	7	7	50	1.59
12844415--12844602	95	1.9	95	84	10	247	36	17	7	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12844772--12844802	16	1.9	16	93	0	53	54	9	0	35	1.33
12844855--12844901	20	2.4	19	80	16	51	44	6	2	46	1.40
12846882--12847088	103	2.0	103	95	0	369	29	15	14	40	1.86
12859214--12859269	29	2.0	29	82	10	71	57	1	1	39	1.20
12860076--12860105	3	10.0	3	92	0	51	3	0	63	33	1.11
12860318--12860366	20	2.5	20	83	6	64	59	6	0	34	1.22
12863749--12863793	22	2.0	22	83	8	56	57	8	0	33	1.30
12863770--12863795	12	2.2	12	100	0	52	46	7	0	46	1.31
12863835--12863901	20	3.4	20	80	8	75	58	5	2	32	1.38
12869408--12869445	15	2.4	17	86	8	53	47	5	23	23	1.72
12874644--12874695	10	5.3	9	82	11	50	23	1	3	71	1.13
12874652--12874687	10	3.5	10	96	3	63	25	2	0	72	0.98
12877634--12877780	25	5.9	25	75	3	125	33	19	27	19	1.96
12877650--12877805	75	2.1	75	83	4	190	34	17	28	18	1.94
12877764--12877812	25	2.0	25	91	0	80	34	16	30	18	1.93
12882891--12882947	16	3.4	16	73	4	51	42	1	3	52	1.28
12884181--12884299	34	3.5	34	82	0	139	32	11	15	40	1.83
12884450--12884556	44	2.4	44	75	3	108	23	14	22	39	1.91
12885704--12885745	21	1.9	22	85	9	59	64	0	2	33	1.07
12897137--12897191	24	2.3	24	84	6	67	21	20	29	29	1.98
12906380--12906652	133	2.1	133	85	0	357	22	23	25	28	1.99
12915901--12916576	307	2.2	299	80	11	764	37	14	8	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12918784--12918819	9	3.9	9	88	3	54	66	11	0	22	1.22
12921727--12921946	115	1.9	115	87	9	327	48	17	8	26	1.75
12922874--12922918	23	2.0	23	82	8	56	51	6	4	37	1.49
12925518--12925593	39	1.9	39	94	0	134	28	11	28	30	1.92
12928411--12928447	19	1.9	19	94	0	65	5	32	0	62	1.18
12930915--12930949	16	2.1	17	89	5	54	42	11	0	45	1.40
12939970--12940119	42	3.5	42	80	6	160	22	16	29	32	1.95
12939970--12940128	43	3.7	42	80	7	178	22	15	29	32	1.95
12946869--12946918	2	25.0	2	95	0	91	48	0	2	50	1.12
12950783--12950825	18	2.3	19	84	8	52	39	6	6	46	1.58
12960151--12960231	40	2.0	41	85	7	112	25	19	23	30	1.98
12963205--12963271	33	2.0	33	91	0	107	38	10	8	41	1.71
12966991--12967079	26	3.6	25	75	15	78	24	25	19	30	1.98
12971623--12971676	28	1.9	28	92	0	90	35	16	31	16	1.92
12972315--12972367	20	2.7	20	87	0	79	43	13	11	32	1.79
12973631--12973731	52	2.0	51	90	3	159	29	12	16	40	1.86
12976827--12976930	40	2.6	40	82	0	109	21	25	28	25	1.99
12976973--12977037	27	2.3	29	89	7	100	36	0	23	40	1.55
12976985--12977044	27	2.2	27	81	0	84	38	0	16	45	1.48
12978349--12978515	59	2.8	59	84	3	203	50	8	5	35	1.57
12978876--12978916	17	2.4	17	83	4	55	43	4	24	26	1.74
12979830--12979929	49	2.0	49	92	0	164	24	23	16	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12989412--12989950	273	2.0	274	90	2	852	34	15	16	33	1.91
12989913--12990012	49	2.0	49	92	0	164	24	23	16	37	1.94
12990572--12990644	32	2.2	32	79	13	78	65	1	1	31	1.09
12990950--12991026	40	1.9	41	86	2	111	24	31	22	22	1.98
12991466--12991522	27	2.1	27	87	3	80	68	1	0	29	1.00
12991505--12991530	11	2.4	11	100	0	52	61	0	0	38	0.96
12996055--12996106	24	2.2	24	89	0	77	55	9	1	32	1.43
12997718--12997769	24	2.2	24	86	6	70	57	9	1	30	1.42
13009111--13009190	39	2.1	39	100	0	160	33	12	7	46	1.70
13014333--13014367	14	2.6	14	86	4	54	34	5	2	57	1.37
13019060--13019102	18	2.4	18	100	0	86	27	30	32	9	1.88
13019266--13019306	21	2.0	21	85	9	57	36	24	14	24	1.93
13025095--13025136	19	2.2	20	87	12	61	57	7	0	35	1.26
13025532--13025566	11	3.2	11	91	0	52	17	40	2	40	1.64
13025524--13025582	22	2.6	22	80	17	68	23	33	1	40	1.65
13025544--13025643	51	2.0	51	82	4	121	27	26	2	45	1.65
13028595--13028641	16	2.9	17	81	6	53	31	4	4	59	1.36
13031054--13031284	22	10.6	22	80	12	228	50	29	0	19	1.51
13031253--13031305	15	3.6	15	73	14	56	50	28	0	20	1.48
13034339--13034681	126	2.7	126	77	7	356	29	21	16	32	1.95
13037954--13038010	27	2.1	27	96	0	105	33	10	24	31	1.89
13041649--13041678	14	2.2	14	94	5	53	70	13	6	10	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13041669--13041747	32	2.5	32	87	6	108	68	8	0	22	1.17
13041730--13041761	13	2.6	13	90	9	50	78	0	0	21	0.76
13042095--13042174	36	2.2	36	84	4	99	26	40	5	28	1.77
13042282--13042383	44	2.4	42	76	12	116	33	31	0	35	1.58
13049852--13049905	14	3.9	14	77	0	54	38	0	27	33	1.57
13049851--13049905	21	2.6	21	88	0	83	40	0	27	32	1.57
13067909--13068038	41	3.1	41	94	1	224	23	29	21	26	1.99
13072895--13072997	49	2.1	49	82	12	122	29	20	23	27	1.99
13072895--13072997	25	4.2	25	80	12	115	29	20	23	27	1.99
13077189--13077214	12	2.2	12	100	0	52	26	7	38	26	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75