genome.fa.s11.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  48  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15324920--15325124	33	5.6	33	65	22	115	21	20	25	31	1.98
15324915--15325129	76	2.8	76	93	0	385	22	20	25	30	1.98
15325142--15325194	27	2.0	27	88	0	79	20	22	30	26	1.98
15336978--15337061	40	2.1	40	82	6	98	33	1	25	40	1.63
15351453--15351541	44	2.0	44	95	0	160	25	14	21	38	1.92
15359770--15359803	11	3.0	11	87	8	50	79	0	0	20	0.73
15359777--15359802	6	4.3	6	100	0	52	84	0	0	15	0.62
15361444--15361500	30	1.9	30	88	0	87	29	26	26	17	1.97
15362378--15362452	38	2.0	38	84	5	98	37	17	1	44	1.57
15369909--15369963	28	1.9	29	82	10	69	47	7	0	45	1.30
15372384--15372437	19	2.8	19	86	8	83	42	11	12	33	1.79
15372384--15372460	19	3.7	22	76	15	67	41	9	15	33	1.79
15372896--15372936	20	1.9	22	85	14	59	14	14	2	68	1.32
15373188--15373246	24	2.4	23	77	22	59	35	1	3	59	1.24
15373293--15373337	23	2.0	23	86	8	65	33	6	4	55	1.46
15374342--15374402	29	2.1	29	81	6	70	59	4	8	27	1.47
15377598--15377689	41	2.2	41	90	5	141	45	16	4	33	1.67
15380626--15380743	42	2.8	43	83	3	150	29	23	17	28	1.97
15390406--15390450	14	3.4	14	75	12	58	17	4	37	40	1.70
15391910--15391950	20	2.1	20	86	4	57	39	0	2	58	1.11
15394026--15394061	17	2.1	17	100	0	72	61	0	5	33	1.19
15394500--15394775	30	9.3	30	77	7	233	22	25	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15394500--15394775	89	3.1	88	81	6	272	22	25	14	37	1.92
15394500--15394776	119	2.3	119	86	1	376	22	25	14	37	1.92
15398238--15398291	20	2.8	19	76	13	58	38	0	5	55	1.23
15403652--15403695	1	44.0	1	100	0	88	0	0	0	100	0.00
15408829--15408890	22	2.8	22	95	0	106	32	30	0	37	1.58
15408862--15408920	30	2.0	30	93	0	100	30	35	0	33	1.58
15408840--15408942	52	2.0	51	86	5	145	33	33	0	33	1.58
15408892--15408933	22	1.9	22	90	0	66	33	33	0	33	1.58
15408975--15409031	29	2.0	29	86	6	80	35	1	1	61	1.17
15409130--15409163	15	2.3	15	90	5	52	26	0	5	67	1.13
15409128--15409185	24	2.3	23	78	21	64	25	0	6	67	1.16
15417047--15417578	23	21.0	28	69	24	246	45	21	1	30	1.63
15417094--15417165	34	2.2	33	94	2	126	45	13	1	38	1.53
15417128--15417655	23	22.0	23	73	20	301	45	22	2	29	1.64
15417156--15417185	15	2.0	15	100	0	60	60	0	0	40	0.97
15417174--15417387	29	7.9	28	80	14	211	43	25	1	28	1.65
15417171--15417556	132	3.0	132	83	13	524	44	23	2	29	1.66
15417407--15417440	17	2.0	17	94	0	59	52	11	2	32	1.53
15417424--15417652	50	4.9	50	84	12	292	45	21	2	30	1.64
15417232--15417652	186	2.2	193	87	7	605	45	22	2	29	1.66
15417589--15417626	17	2.2	17	95	0	67	52	15	2	28	1.56
15417474--15417655	63	2.7	64	83	12	240	46	21	2	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15421686--15421761	39	1.9	39	97	0	143	35	27	18	18	1.94
15429481--15429717	44	5.8	43	75	20	233	26	18	25	29	1.98
15429506--15429645	34	3.8	34	78	17	154	24	22	25	28	1.99
15429481--15429692	78	2.7	78	93	1	354	25	18	27	28	1.98
15429616--15429731	44	2.6	43	84	2	142	28	18	24	29	1.98
15429864--15430032	50	3.4	50	76	3	187	29	20	24	25	1.99
15429992--15430114	51	2.4	51	78	8	117	27	21	25	26	1.99
15430827--15430887	19	2.9	21	83	11	72	37	8	16	37	1.78
15430840--15430897	22	2.7	23	78	7	59	37	5	15	41	1.70
15431088--15431132	23	2.0	23	81	0	54	22	0	15	62	1.33
15438797--15438858	31	2.0	31	100	0	124	45	16	3	35	1.63
15442746--15442800	5	11.0	5	100	0	110	40	20	0	40	1.52
15442982--15443106	29	4.3	29	77	9	139	42	22	13	21	1.88
15446337--15446361	2	12.5	2	100	0	50	48	0	0	52	1.00
15454265--15454340	37	2.1	37	100	0	152	35	5	2	56	1.36
15456812--15456851	19	2.1	19	86	9	55	32	2	5	60	1.32
15458449--15458487	2	19.5	2	100	0	78	0	0	48	51	1.00
15458619--15458791	42	4.1	42	86	3	242	30	20	20	28	1.98
15460727--15460758	15	2.1	15	94	0	55	68	9	6	15	1.36
15462153--15462218	29	2.2	29	84	7	80	36	4	1	57	1.28
15462153--15462250	30	3.3	30	79	12	105	35	5	3	56	1.37
15463903--15463927	2	12.5	2	100	0	50	0	0	48	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15467293--15467403	19	5.8	19	81	4	143	36	15	12	36	1.85
15468760--15468814	16	3.6	15	77	15	51	25	3	1	69	1.15
15469599--15469646	22	2.2	22	84	0	60	77	12	2	8	1.08
15472115--15472161	22	2.1	21	84	7	58	38	8	2	51	1.45
15474980--15475032	22	2.4	22	75	12	54	41	0	1	56	1.10
15475003--15475041	15	2.4	16	87	8	53	35	0	0	64	0.94
15476234--15476272	14	2.8	14	80	0	51	41	12	10	35	1.77
15477127--15477151	13	1.9	13	100	0	50	24	8	40	28	1.83
15478030--15478062	15	2.3	15	89	5	50	69	0	0	30	0.88
15478968--15479002	2	17.5	2	100	0	70	0	51	0	48	1.00
15482007--15482062	20	2.8	19	82	17	62	71	5	1	21	1.15
15482007--15482071	21	3.2	21	85	10	82	69	7	3	20	1.27
15482083--15482123	21	2.0	21	85	0	55	43	29	0	26	1.55
15488376--15488433	28	2.1	28	96	0	107	55	1	6	36	1.37
15505419--15505456	20	1.9	20	94	0	67	39	0	15	44	1.47
15509849--15509961	51	2.2	52	84	4	140	31	20	5	42	1.74
15517202--15517322	20	6.0	20	77	4	118	9	28	21	41	1.83
15517833--15517859	5	5.4	5	100	0	54	55	0	22	22	1.44
15518112--15518182	27	2.7	27	71	16	67	40	4	25	29	1.74
15531987--15532053	22	3.1	21	72	16	64	11	22	20	44	1.84
15535348--15535421	3	24.7	3	100	0	148	0	33	0	66	0.92
15537155--15537213	30	2.0	30	90	3	93	55	11	5	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15544377--15544401	13	1.9	13	100	0	50	64	12	8	16	1.49
15551046--15551321	52	5.1	52	73	14	188	36	23	16	23	1.94
15552745--15552842	25	4.0	25	77	5	94	21	23	21	33	1.97
15553918--15554077	66	2.4	66	89	0	248	20	28	26	25	1.99
15557387--15557494	46	2.3	46	85	1	135	28	2	25	42	1.69
15557392--15557494	23	4.5	23	76	0	98	27	2	27	42	1.69
15565390--15565489	34	2.9	35	81	8	118	40	1	15	44	1.53
15565594--15565982	126	3.1	126	86	2	548	38	16	16	28	1.91
15567624--15567671	21	2.3	21	92	0	78	31	16	31	20	1.95
15569543--15569571	14	2.1	14	100	0	58	34	6	6	51	1.55
15574458--15574641	22	8.1	22	83	7	224	41	19	23	15	1.90
15574460--15574652	47	4.2	46	90	3	291	40	19	24	16	1.91
15574458--15574641	69	2.7	66	80	7	224	41	19	23	15	1.90
15574997--15575026	15	1.9	16	93	6	53	60	0	0	40	0.97
15575736--15575801	29	2.3	28	75	19	64	51	3	3	42	1.32
15576080--15576117	18	2.0	19	85	10	51	42	15	0	42	1.47
15577989--15578119	62	2.2	59	82	13	153	53	5	3	37	1.42
15578473--15578515	18	2.4	18	84	0	59	44	9	25	20	1.81
15582759--15582806	18	2.5	19	81	18	64	64	0	0	35	0.94
15582759--15582805	19	2.5	20	79	10	62	65	0	0	34	0.93
15583250--15583316	24	2.8	24	71	8	64	23	1	4	70	1.14
15583969--15584002	1	34.0	1	100	0	68	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15587941--15587975	18	1.9	18	94	0	61	42	45	5	5	1.51
15591988--15592021	13	2.6	13	100	0	68	41	5	20	32	1.76
15595759--15595890	62	2.2	57	84	6	156	53	3	3	39	1.34
15602212--15602249	15	2.4	16	87	12	53	13	10	2	73	1.19
15610313--15610341	7	4.3	7	95	4	51	0	41	0	58	0.98
15614047--15614102	24	2.3	25	84	9	80	8	51	10	28	1.66
15627701--15627761	30	2.0	30	96	0	113	29	0	27	42	1.56
15641047--15641087	11	3.4	12	86	6	57	9	24	0	65	1.22
15641340--15641427	22	3.9	22	79	11	79	37	19	26	17	1.93
15641340--15641511	25	7.4	25	76	13	109	36	18	25	20	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75