genome.fa.s11.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  51  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16295698--16295728	15	2.1	15	100	0	62	38	22	6	32	1.80
16296147--16296178	16	1.9	17	93	6	57	56	3	0	40	1.15
16296515--16296551	2	18.5	2	100	0	74	48	0	0	51	1.00
16306779--16306813	10	3.6	10	84	7	54	34	0	2	62	1.10
16309367--16309391	12	2.1	12	100	0	50	24	36	24	16	1.94
16309552--16309577	9	2.9	9	100	0	52	34	34	7	23	1.83
16313960--16313997	19	2.0	19	100	0	76	36	36	0	26	1.57
16314167--16314205	20	2.0	20	85	10	53	41	0	17	41	1.50
16314446--16314520	39	1.9	39	88	0	114	30	13	20	36	1.91
16316372--16316545	90	1.9	90	83	1	222	44	2	11	40	1.55
16316617--16316653	17	2.2	17	90	0	56	48	2	10	37	1.52
16322925--16323129	71	2.9	71	90	0	322	33	19	16	30	1.94
16323570--16323646	35	2.2	36	79	6	86	46	1	11	40	1.48
16325264--16325795	12	41.6	13	71	19	235	24	3	19	52	1.62
16325261--16325399	50	2.8	49	78	13	126	20	6	20	52	1.68
16325445--16325731	4	71.8	4	77	15	258	25	2	20	51	1.58
16325752--16325808	29	1.9	30	85	3	80	22	5	15	56	1.60
16326516--16326576	30	2.0	30	100	0	122	42	9	24	22	1.84
16328908--16328951	20	2.2	21	88	8	65	29	11	6	52	1.63
16331224--16331254	15	2.1	15	93	0	53	16	45	3	35	1.63
16331744--16331829	45	1.9	45	90	4	138	20	4	22	52	1.65
16332595--16332625	16	1.9	16	93	0	53	48	0	35	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16335067--16335142	27	2.8	27	82	4	82	38	13	26	22	1.91
16355434--16355504	23	3.1	23	79	0	79	39	21	16	22	1.92
16355828--16355877	25	2.0	25	84	11	66	36	22	0	42	1.54
16356668--16356702	12	3.0	11	91	8	52	0	22	0	77	0.78
16356725--16356777	5	10.6	5	84	15	58	0	16	3	79	0.88
16361551--16361608	28	2.1	28	100	0	116	31	13	17	37	1.89
16368607--16368635	2	14.5	2	100	0	58	51	0	48	0	1.00
16370425--16370457	16	2.1	16	88	5	50	45	15	0	39	1.46
16372746--16372789	22	1.9	24	86	9	65	36	13	0	50	1.42
16376034--16376125	32	2.9	32	73	15	93	21	14	18	45	1.84
16376029--16376132	32	3.3	32	70	14	90	20	14	21	44	1.86
16380924--16380979	21	2.7	21	91	0	67	19	37	19	23	1.94
16380908--16380973	21	3.1	21	91	4	98	16	37	21	24	1.93
16394840--16394869	12	2.5	12	94	0	51	20	16	33	30	1.94
16398644--16398781	43	3.2	44	82	7	151	24	14	22	38	1.92
16399528--16399646	46	2.6	46	86	4	143	28	14	20	36	1.91
16399519--16399646	45	2.8	45	84	5	168	27	13	21	38	1.90
16406364--16406416	27	2.0	27	85	7	72	56	9	5	28	1.54
16412277--16412306	16	1.9	15	93	6	51	26	10	16	46	1.78
16414525--16414549	5	5.0	5	100	0	50	40	0	0	60	0.97
16424733--16424799	29	2.2	30	84	7	82	29	4	14	50	1.63
16425280--16425316	19	1.9	19	100	0	74	64	0	2	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16427612--16427641	4	7.5	4	100	0	60	50	0	0	50	1.00
16432152--16432242	45	2.0	46	97	2	175	21	16	4	57	1.57
16433083--16433122	15	2.6	16	88	7	57	65	0	20	15	1.28
16435435--16436178	44	16.7	44	69	11	370	32	19	20	28	1.97
16435434--16436186	88	8.4	88	73	8	511	32	18	20	28	1.96
16435433--16436178	133	5.6	130	72	13	423	32	19	20	28	1.97
16435425--16435946	177	2.9	176	85	2	686	33	19	19	27	1.96
16436061--16436217	44	3.6	43	77	5	136	29	18	21	30	1.97
16439476--16439513	20	1.9	20	84	10	51	47	18	5	28	1.70
16456632--16456664	16	1.9	18	88	11	52	12	6	9	72	1.26
16464653--16464686	16	2.1	16	94	0	59	44	5	29	20	1.75
16471934--16471986	24	2.1	24	82	10	61	41	11	39	7	1.69
16479221--16479253	12	2.7	13	86	13	52	54	0	0	45	0.99
16479195--16479247	27	2.0	26	82	10	63	50	3	0	45	1.19
16486477--16486567	45	2.0	45	95	0	164	23	23	21	31	1.98
16501073--16501171	28	3.5	28	76	13	89	62	0	4	33	1.14
16506332--16506365	17	2.0	17	94	0	59	26	26	0	47	1.53
16508465--16508520	6	9.3	6	86	0	76	46	3	33	16	1.64
16509494--16509532	19	2.1	19	100	0	78	46	5	10	38	1.60
16513534--16513574	20	2.0	20	90	0	64	14	17	26	41	1.88
16521042--16521086	2	22.5	2	95	0	81	53	0	46	0	1.00
16521989--16522014	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16523355--16523412	30	2.0	28	86	6	80	65	3	13	17	1.40
16523393--16523423	13	2.4	13	94	0	53	74	0	25	0	0.82
16526511--16526889	93	4.1	93	77	7	356	37	17	15	29	1.91
16540085--16540151	26	2.6	26	88	2	91	20	2	11	64	1.40
16545291--16545449	84	1.9	84	79	7	180	30	20	18	30	1.97
16545283--16545489	28	7.4	28	74	6	152	30	19	18	30	1.96
16545291--16545489	56	3.6	56	77	4	204	30	20	18	30	1.96
16546522--16546647	25	5.3	24	84	6	143	38	18	25	18	1.93
16548335--16548446	44	2.5	44	80	5	120	32	24	18	25	1.97
16548542--16548945	132	3.1	132	89	1	596	26	23	19	29	1.98
16548953--16549849	45	20.1	45	84	2	1065	30	24	16	28	1.96
16552078--16552117	11	3.5	11	83	6	53	2	20	0	77	0.88
16552078--16552117	6	6.8	6	88	5	55	2	20	0	77	0.88
16552078--16552117	17	2.3	17	91	4	62	2	20	0	77	0.88
16554721--16554755	16	2.2	16	89	0	52	42	22	17	17	1.88
16557306--16557339	17	2.1	16	88	5	50	0	32	0	67	0.91
16557456--16557502	23	2.0	23	91	0	76	42	10	4	42	1.59
16558284--16558338	26	2.1	26	100	0	110	40	23	7	29	1.81
16559334--16559378	23	2.0	23	90	0	72	57	4	6	31	1.44
16569054--16569083	9	3.3	9	90	0	51	56	6	0	36	1.26
16570347--16570388	6	7.2	6	78	5	50	78	16	2	2	0.96
16570888--16570912	13	1.9	13	100	0	50	16	4	0	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16572427--16572568	66	2.2	66	88	2	214	29	10	20	39	1.86
16574090--16574202	59	1.9	59	94	0	199	20	8	8	61	1.51
16575998--16576046	20	2.4	20	93	3	80	44	0	16	38	1.48
16587479--16587523	17	2.6	16	83	13	54	33	6	11	48	1.65
16588534--16588569	18	2.0	18	88	0	54	36	25	16	22	1.94
16596276--16597015	131	5.7	131	84	2	889	34	14	15	35	1.88
16596369--16596983	67	9.4	65	69	14	381	34	14	15	35	1.88
16596276--16597015	261	2.8	260	85	2	980	34	14	15	35	1.88
16599227--16599327	22	4.6	23	71	14	70	51	18	12	16	1.76
16616196--16616238	22	2.0	22	90	4	70	25	0	20	53	1.46
16618423--16618482	25	2.4	25	85	0	84	31	20	23	25	1.98
16618499--16618660	25	6.6	25	78	7	127	38	18	25	16	1.92
16618448--16618636	50	3.8	50	71	13	124	36	18	25	19	1.94
16618522--16618660	75	1.9	74	87	1	206	38	17	27	16	1.92
16618522--16618660	50	2.8	49	76	3	143	38	17	27	16	1.92
16622759--16622807	18	3.1	15	78	18	55	67	2	4	26	1.19
16622759--16622796	18	2.1	18	90	0	58	68	0	5	26	1.11
16628847--16628898	19	2.7	19	93	0	86	32	19	1	46	1.61
16628847--16628898	10	5.4	10	73	17	56	32	19	1	46	1.61
16628850--16628904	19	2.9	18	86	7	74	32	18	1	47	1.59
16631129--16631153	4	6.2	4	100	0	50	52	0	24	24	1.48
16632483--16632521	21	1.9	20	89	5	60	64	2	7	25	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16632787--16633116	114	2.9	113	91	2	520	24	23	27	25	2.00
16633364--16633394	15	2.1	15	93	0	53	19	0	45	35	1.51
16639496--16639717	43	5.2	43	90	2	347	27	22	29	20	1.98
16640703--16640741	21	1.9	20	89	5	60	64	2	7	25	1.33
16641055--16641085	9	3.4	9	90	0	53	25	12	22	38	1.90
16643836--16643868	13	2.4	14	95	5	59	24	12	0	63	1.28
16643833--16643870	14	2.7	15	88	12	62	28	10	0	60	1.30
16643884--16643940	22	2.8	21	75	19	59	42	5	1	50	1.35
16646259--16646420	40	4.1	40	100	0	324	32	15	9	42	1.80
16649975--16650340	124	2.9	125	90	1	581	28	15	22	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75