genome.fa.s11.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  28  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8357498--8357549	15	3.4	15	77	15	52	48	30	0	21	1.51
8357580--8357647	14	4.7	14	69	18	50	47	29	0	23	1.52
8357579--8357688	29	3.8	30	74	10	102	47	27	0	25	1.52
8357530--8357639	50	2.2	52	82	9	140	45	30	0	23	1.53
8357530--8357675	50	2.9	50	78	15	135	45	29	0	24	1.53
8357727--8357887	38	4.0	38	78	9	160	48	26	0	24	1.56
8357756--8357869	42	2.8	42	81	7	112	50	24	0	24	1.55
8357687--8357887	84	2.4	85	79	13	227	47	26	0	25	1.56
8358869--8359491	313	2.0	313	95	0	1129	31	21	16	30	1.95
8361315--8361854	126	4.3	126	87	2	721	30	22	16	30	1.96
8362823--8362860	15	2.5	16	83	12	53	34	0	5	60	1.19
8364797--8364851	9	6.2	9	87	4	67	38	27	12	21	1.90
8364798--8364850	17	3.1	17	88	2	79	35	28	13	22	1.92
8365572--8365635	32	2.0	32	100	0	128	31	15	15	37	1.89
8369631--8369871	43	5.6	44	78	8	221	28	14	24	32	1.94
8369626--8369867	85	2.8	84	76	12	249	28	14	24	32	1.94
8371926--8371955	15	2.0	15	100	0	60	46	26	0	26	1.53
8375063--8375104	19	2.2	20	86	4	59	73	2	0	23	0.94
8382333--8382421	34	2.6	34	87	1	115	55	3	6	34	1.43
8382506--8382554	24	2.0	24	84	7	64	53	4	8	34	1.50
8383716--8383785	35	2.0	35	88	2	106	11	11	31	45	1.76
8384103--8384226	44	2.8	44	79	3	117	29	24	16	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8385620--8386219	89	6.7	89	90	1	907	27	23	18	31	1.97
8385637--8386214	269	2.2	268	96	0	1052	26	23	18	31	1.97
8387476--8387538	7	9.7	7	88	11	91	12	12	0	74	1.07
8390352--8390391	19	2.0	20	85	4	55	47	7	20	25	1.75
8390419--8390443	13	1.9	13	100	0	50	48	12	8	32	1.69
8391900--8391990	34	2.7	34	78	13	105	54	3	7	34	1.45
8392075--8392123	24	2.0	24	84	7	64	53	4	8	34	1.50
8393285--8393354	35	2.0	35	88	2	106	11	11	31	45	1.76
8393574--8393600	6	4.5	6	100	0	54	33	0	0	66	0.92
8398106--8398171	8	8.4	8	73	18	50	45	1	1	51	1.19
8398103--8398168	7	8.6	7	76	18	53	43	1	1	53	1.19
8398113--8398181	32	2.2	32	79	7	79	47	1	2	47	1.25
8398874--8398920	24	2.0	24	84	16	62	31	0	17	51	1.46
8400415--8400521	40	2.7	40	84	4	137	36	22	21	19	1.95
8400583--8400699	41	2.9	41	93	2	200	17	22	33	27	1.96
8401019--8401236	7	31.0	7	73	8	129	20	0	38	39	1.59
8401047--8401149	28	3.6	28	89	1	152	16	0	36	45	1.54
8401111--8401198	27	3.1	29	76	14	85	19	1	40	38	1.59
8401289--8401332	14	3.1	14	83	3	52	29	2	31	36	1.70
8401473--8401538	7	9.4	7	84	0	87	15	0	51	33	1.43
8401473--8401546	21	3.5	21	81	0	85	17	0	50	32	1.47
8401473--8401538	28	2.4	28	89	0	96	15	0	51	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8401651--8401704	7	7.6	7	85	2	72	18	0	51	29	1.46
8401651--8401704	21	2.5	21	87	3	81	18	0	51	29	1.46
8410967--8411003	18	2.0	19	89	5	58	75	2	16	5	1.10
8412762--8412833	33	2.1	34	87	2	101	41	6	11	40	1.67
8414763--8414805	12	3.3	12	78	15	50	60	11	18	9	1.57
8418752--8418817	15	4.5	15	74	16	50	7	18	1	72	1.15
8418766--8418837	19	3.7	20	76	10	69	6	16	1	75	1.10
8421056--8421109	12	5.1	11	76	19	53	20	9	1	68	1.27
8421077--8421109	12	2.8	12	95	0	57	18	12	0	69	1.18
8421375--8421440	23	2.9	23	77	8	80	28	6	27	37	1.80
8424311--8424336	3	8.7	3	100	0	52	30	0	0	69	0.89
8428906--8428991	29	3.1	28	84	12	90	33	8	12	45	1.72
8428919--8428991	29	2.5	29	95	0	128	31	9	13	45	1.76
8430318--8430372	10	4.8	12	80	11	62	72	1	7	18	1.16
8430322--8430383	10	6.0	10	78	14	56	72	1	8	17	1.17
8430321--8430372	11	4.6	11	83	11	70	75	1	5	17	1.10
8444125--8444157	10	3.4	10	91	4	50	0	12	0	87	0.53
8444120--8444157	11	3.5	11	82	7	51	2	13	0	84	0.73
8452713--8452746	13	2.7	12	86	13	50	73	0	11	14	1.10
8458808--8459023	119	1.8	119	100	0	432	45	21	13	19	1.84
8485161--8485531	142	2.6	143	90	1	566	29	21	22	27	1.99
8485419--8485610	98	2.0	98	90	0	303	29	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8485435--8485635	98	2.1	98	84	3	262	31	20	20	27	1.98
8485881--8485917	17	2.2	17	100	0	74	54	21	13	10	1.69
8486872--8486916	20	2.3	19	84	7	54	31	11	33	24	1.90
8487329--8487377	25	2.0	25	88	8	73	48	38	4	8	1.52
8506628--8506665	14	2.8	13	84	7	58	28	0	0	71	0.87
8506822--8506894	19	4.1	19	69	16	57	67	6	9	16	1.40
8506839--8506888	11	4.5	11	84	0	55	70	8	8	14	1.34
8506816--8506889	22	3.5	22	76	10	64	66	6	9	17	1.42
8509474--8509538	3	21.7	3	93	0	103	36	0	32	30	1.58
8511820--8511869	26	1.9	26	84	8	66	24	4	4	68	1.24
8518441--8518610	27	6.3	27	85	6	220	41	19	15	22	1.89
8518447--8518610	81	2.0	81	89	2	249	42	18	15	22	1.88
8518907--8518983	30	2.4	31	78	10	84	22	23	20	33	1.97
8520818--8521366	137	4.0	138	92	2	851	40	7	6	45	1.59
8521130--8521341	67	3.1	67	65	18	184	42	6	7	43	1.58
8521060--8521274	70	3.1	70	65	18	196	39	8	7	44	1.65
8522469--8522498	15	2.0	15	93	0	51	50	0	36	13	1.42
8525202--8525281	32	2.5	32	95	2	144	27	2	28	41	1.69
8528680--8528731	20	2.8	18	78	16	61	55	0	5	38	1.24
8528820--8528857	20	1.9	20	84	10	51	18	7	7	65	1.43
8529512--8529548	9	4.1	9	85	0	56	48	13	8	29	1.71
8530581--8530606	5	5.2	5	100	0	52	19	19	19	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8534141--8534200	17	3.5	17	77	11	68	61	0	1	36	1.06
8535407--8535464	24	2.5	22	81	13	71	63	6	5	24	1.40
8535482--8535532	25	2.0	25	84	0	66	29	7	1	60	1.36
8542353--8542384	12	2.7	12	100	0	64	46	0	6	46	1.27
8546314--8546342	3	9.7	3	100	0	58	31	0	0	68	0.89
8550964--8551050	27	3.2	27	78	3	86	21	16	16	45	1.84
8559679--8559789	51	2.2	51	96	0	204	30	24	22	22	1.99
8564750--8564781	12	2.7	12	100	0	64	25	37	28	9	1.87
8583489--8583559	36	2.0	36	88	0	106	30	26	12	29	1.93
8585490--8585537	25	2.0	24	84	12	62	37	18	25	18	1.94
8592725--8592778	28	1.9	28	100	0	108	48	11	12	27	1.76
8592725--8592786	28	2.2	28	94	0	106	48	9	11	30	1.71
8592929--8592986	18	3.2	18	72	0	53	32	12	24	31	1.91
8592996--8593066	36	2.0	36	91	0	115	33	30	8	26	1.86
8595262--8595301	21	2.0	21	85	5	55	52	7	5	35	1.51
8604799--8604828	10	3.0	10	95	0	51	10	0	33	56	1.32
8606793--8606838	22	2.1	23	84	8	60	63	4	0	32	1.14
8616947--8617124	95	1.9	96	89	1	277	33	14	18	33	1.91
8620556--8620676	20	6.1	20	78	3	118	14	28	19	38	1.90
8621370--8621406	19	2.0	20	89	10	60	27	2	16	54	1.56
8630550--8630580	15	2.1	15	93	0	53	61	25	0	12	1.32
8633931--8633965	14	2.6	13	86	8	52	28	25	5	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8634450--8634511	27	2.3	27	82	0	70	38	19	24	17	1.93
8636273--8636314	18	2.3	18	84	8	50	35	2	2	59	1.23
8637445--8637515	21	3.3	21	62	14	54	30	43	5	19	1.74
8637419--8637574	45	3.5	45	91	1	260	24	45	8	21	1.79
8643783--8643820	20	1.9	20	94	0	67	21	34	31	13	1.91
8650660--8650724	16	4.1	16	87	0	85	38	3	35	23	1.70
8650939--8650973	18	2.0	17	88	5	52	54	0	0	45	0.99
8651639--8651680	20	2.1	20	100	0	84	35	9	19	35	1.84
8656855--8656916	22	2.8	22	76	7	63	17	24	17	40	1.91
8657253--8657445	51	3.9	48	77	7	188	25	18	26	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75