genome.fa.s11.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  54  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17243113--17243367	109	2.3	109	84	2	343	25	21	16	36	1.94
17243104--17243367	73	3.6	71	78	6	287	25	21	17	36	1.94
17271737--17271761	13	1.9	13	100	0	50	48	16	28	8	1.74
17273320--17273425	44	2.5	41	73	18	108	33	31	4	30	1.78
17273333--17273425	44	2.1	46	93	4	163	35	31	5	27	1.80
17273415--17273460	16	2.9	16	100	0	92	30	30	0	39	1.57
17275846--17275983	50	2.8	50	93	0	231	23	28	22	26	1.99
17292177--17292972	395	2.0	396	92	1	1321	46	19	14	18	1.84
17300324--17300350	8	3.4	8	100	0	54	25	0	0	74	0.83
17302516--17302608	45	2.1	45	91	0	150	32	20	19	27	1.97
17310786--17310956	64	2.7	64	83	0	198	35	29	8	27	1.86
17317757--17317791	13	2.7	13	90	0	52	42	11	0	45	1.40
17320184--17320449	48	5.5	48	89	0	343	24	27	20	28	1.99
17322527--17322593	23	2.8	23	82	10	73	20	5	22	50	1.69
17322528--17322603	24	3.2	23	78	12	82	22	5	22	50	1.69
17322725--17322774	26	1.9	26	87	0	73	22	16	20	42	1.89
17322781--17322860	32	2.5	31	80	6	88	21	18	21	38	1.93
17322799--17323014	32	6.8	32	75	2	148	22	21	19	35	1.96
17322779--17322987	64	3.3	63	78	4	195	20	21	21	36	1.95
17322778--17322995	96	2.3	96	79	4	242	21	21	21	36	1.96
17323207--17323260	28	1.9	28	92	0	90	16	27	25	29	1.97
17329527--17329564	20	1.9	20	84	10	51	57	10	5	26	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17334141--17334285	50	2.9	50	81	1	166	22	28	22	27	1.99
17336556--17336607	25	2.0	26	85	3	70	40	11	7	40	1.70
17340048--17340104	15	3.6	15	72	11	51	50	1	3	43	1.29
17355603--17355667	29	2.2	28	76	12	69	26	16	16	40	1.90
17355718--17355816	28	3.4	29	85	2	128	21	19	26	33	1.97
17365807--17365836	15	2.0	15	93	0	51	30	26	3	40	1.72
17366992--17367120	47	2.7	47	84	1	159	27	23	16	33	1.95
17367094--17367346	91	2.8	92	84	3	332	30	22	14	33	1.93
17381995--17382132	47	2.8	48	77	9	154	26	14	24	34	1.94
17391273--17391418	76	1.9	75	84	1	193	52	15	4	28	1.61
17392541--17392593	18	2.8	19	82	5	63	73	1	1	22	1.03
17396216--17396355	50	2.8	50	81	0	163	21	28	23	26	1.99
17401091--17401121	5	6.2	5	92	0	53	22	16	19	41	1.89
17404280--17404476	50	3.8	50	79	6	189	23	26	21	27	1.99
17413834--17413896	21	3.0	21	68	6	56	22	23	22	31	1.98
17417596--17417654	9	6.6	9	90	0	91	25	11	22	40	1.88
17417596--17417662	18	3.7	18	87	0	98	28	10	19	41	1.84
17417603--17417671	27	2.6	27	83	0	75	28	8	17	44	1.78
17419441--17419472	10	2.8	12	86	13	50	9	28	0	62	1.26
17423800--17423951	32	4.8	32	84	3	189	37	17	19	25	1.94
17423800--17423951	64	2.4	64	89	0	232	37	17	19	25	1.94
17423946--17424011	26	2.5	26	87	4	89	33	24	21	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17424127--17424236	24	4.6	24	80	4	123	40	20	9	29	1.83
17424255--17424480	27	8.4	27	79	4	120	25	24	18	31	1.98
17424255--17424480	54	4.2	54	81	4	226	25	24	18	31	1.98
17424254--17424479	81	2.8	78	80	7	224	25	24	19	30	1.98
17424707--17424745	18	2.2	17	86	4	51	23	51	15	10	1.73
17425225--17425267	20	2.2	20	95	0	77	27	46	2	23	1.64
17426283--17426333	25	2.0	25	100	0	102	35	27	3	33	1.75
17426413--17426516	37	2.8	37	72	4	95	31	11	20	36	1.88
17442033--17442678	329	2.0	331	96	0	1188	35	10	9	44	1.72
17443333--17443383	17	3.0	17	94	0	84	39	21	11	27	1.88
17443340--17443391	17	3.1	17	94	0	86	40	21	11	26	1.87
17449515--17449579	31	2.1	31	91	0	103	18	21	35	24	1.96
17450960--17451004	20	2.2	21	96	4	83	33	15	17	33	1.92
17451769--17451862	19	4.8	19	87	5	143	37	11	15	35	1.85
17451769--17451869	40	2.7	38	85	8	143	37	10	15	35	1.83
17458502--17458542	20	2.0	20	90	0	64	36	14	24	24	1.93
17468446--17468479	17	2.0	17	100	0	68	41	23	11	23	1.87
17468447--17468487	17	2.4	17	91	0	64	39	19	12	29	1.88
17476380--17476474	46	2.1	46	97	0	181	34	1	23	41	1.62
17484223--17484310	44	2.0	43	89	4	133	29	9	10	51	1.67
17485938--17486017	22	3.8	21	68	14	56	51	12	15	21	1.75
17485936--17486037	42	2.5	42	77	7	127	51	14	12	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17485937--17485985	22	2.3	22	79	6	57	51	12	14	22	1.75
17493610--17493664	6	8.5	6	81	15	65	18	1	1	78	0.94
17520618--17520666	19	2.7	18	84	6	55	79	0	18	2	0.83
17520618--17520656	9	4.2	9	80	6	51	82	0	17	0	0.68
17529955--17530027	23	3.1	23	73	11	60	72	1	19	6	1.14
17532514--17532545	10	3.2	10	95	0	55	15	0	21	62	1.32
17535399--17535423	4	6.2	4	100	0	50	76	0	0	24	0.80
17545329--17545392	25	2.6	25	92	0	110	21	23	12	42	1.87
17548694--17548721	10	2.8	10	100	0	56	17	7	0	75	1.03
17549582--17549610	6	4.8	6	100	0	58	86	0	0	13	0.58
17550998--17551031	16	2.1	17	88	5	52	50	0	0	50	1.00
17554961--17554987	13	2.1	13	100	0	54	7	48	29	14	1.71
17559617--17559658	9	4.8	9	77	16	52	42	2	0	54	1.13
17560223--17560257	3	11.7	3	100	0	70	34	0	0	65	0.93
17567069--17567134	34	1.9	34	93	0	114	34	7	22	34	1.83
17570924--17570956	11	2.8	12	90	9	50	66	0	6	27	1.15
17580586--17580645	27	2.2	29	79	11	72	25	15	11	48	1.78
17587640--17587719	15	5.7	14	69	21	53	72	0	20	7	1.08
17587605--17587712	40	2.6	43	76	18	113	70	0	20	8	1.19
17587635--17587702	20	3.4	20	80	17	79	72	0	20	7	1.09
17587685--17587719	15	2.3	15	95	5	61	74	0	20	5	1.02
17587614--17587718	19	5.4	20	70	25	59	72	0	19	7	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17590543--17590613	28	2.6	28	76	14	76	29	11	11	47	1.74
17590677--17590723	24	2.0	24	95	0	85	46	38	4	10	1.58
17591842--17591886	3	14.7	3	83	4	54	40	0	2	57	1.11
17592226--17592284	12	5.1	12	74	25	56	38	1	3	55	1.26
17597229--17597278	9	5.7	9	95	4	93	80	10	0	10	0.92
17597230--17597298	27	2.6	26	77	15	61	81	10	1	7	0.94
17597256--17597339	38	2.2	37	81	14	91	79	7	7	5	1.05
17597321--17597357	6	5.8	6	96	3	56	86	0	13	0	0.57
17597320--17597357	7	5.7	7	93	6	62	86	0	13	0	0.56
17597318--17597357	19	2.1	18	90	9	62	87	0	12	0	0.54
17599482--17599767	85	3.4	84	73	10	265	30	19	21	29	1.97
17599389--17599805	171	2.4	173	86	4	576	29	19	21	28	1.98
17599605--17599931	129	2.5	127	89	4	478	30	18	21	29	1.97
17599389--17600029	44	14.7	43	68	12	253	31	18	21	28	1.97
17600319--17600350	5	6.4	5	100	0	64	59	0	40	0	0.97
17601075--17601099	13	1.9	13	100	0	50	32	8	24	36	1.84
17601716--17601749	3	11.3	3	93	0	59	35	2	0	61	1.11
17602099--17602157	12	5.1	12	74	25	56	38	1	3	55	1.26
17606007--17606036	15	1.9	16	93	6	53	56	0	0	43	0.99
17606285--17606322	16	2.4	17	86	8	53	36	5	0	57	1.21
17611112--17611165	17	3.2	17	80	12	51	62	5	1	29	1.28
17613467--17613525	31	1.9	30	83	13	75	47	13	6	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17613701--17613756	29	1.9	29	96	0	103	35	17	14	32	1.90
17613704--17613765	29	2.1	29	85	5	81	35	14	19	30	1.92
17622939--17622973	18	1.9	18	88	0	52	37	28	8	25	1.85
17623205--17623530	41	8.0	41	83	3	311	22	17	30	30	1.97
17623251--17623562	41	7.7	40	82	4	216	22	18	28	30	1.97
17623903--17623981	22	3.6	23	77	13	69	24	1	27	46	1.60
17623928--17623981	7	7.6	7	77	4	54	22	0	27	50	1.50
17623989--17624052	29	2.3	27	81	10	74	20	0	34	45	1.51
17623870--17624052	14	12.9	14	66	14	70	21	1	30	46	1.59
17647514--17647705	87	2.2	86	89	0	285	31	7	17	43	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75