genome.fa.s11.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  19  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5323623--5323697	19	3.8	19	87	6	105	37	17	10	34	1.84
5324813--5324875	27	2.3	27	91	0	99	22	31	31	14	1.93
5324925--5324950	11	2.4	11	100	0	52	23	0	0	76	0.78
5325724--5325766	22	2.0	22	95	0	77	9	20	27	41	1.83
5325838--5326284	43	10.3	43	85	4	508	31	31	19	18	1.96
5325860--5326303	173	2.6	173	84	3	574	31	31	18	18	1.95
5325860--5326284	130	3.3	129	86	3	559	31	31	19	18	1.95
5341437--5341470	13	2.6	13	100	0	68	41	0	8	50	1.34
5342046--5342091	24	2.0	22	91	8	74	23	0	41	34	1.55
5342227--5342311	43	2.0	43	95	0	152	34	18	25	21	1.96
5342890--5342930	19	2.1	20	82	13	50	46	0	4	48	1.23
5343333--5343387	15	3.6	15	81	18	69	30	49	0	20	1.49
5343333--5343439	22	4.6	22	77	14	99	35	42	0	22	1.54
5343343--5343439	50	2.0	50	82	8	119	37	39	0	23	1.55
5343333--5343461	14	9.1	14	67	17	54	35	41	0	22	1.54
5343794--5343948	41	3.8	41	73	17	126	39	29	16	15	1.89
5343817--5343948	41	3.2	41	74	13	128	38	28	17	15	1.91
5343793--5343948	82	1.9	82	85	10	221	39	28	16	15	1.89
5348147--5348181	1	35.0	1	100	0	70	100	0	0	0	0.00
5348705--5348750	24	1.9	24	86	8	67	47	23	2	26	1.63
5348775--5348800	11	2.4	11	100	0	52	84	0	15	0	0.62
5349338--5349471	71	1.9	71	95	0	241	32	4	23	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5354314--5354373	9	6.4	10	75	19	58	73	5	0	21	1.02
5354314--5354373	18	3.3	18	84	11	86	73	5	0	21	1.02
5357466--5357631	42	4.0	41	86	4	192	29	24	18	27	1.98
5357488--5357631	42	3.4	42	89	0	216	29	25	18	27	1.98
5357891--5357942	20	2.7	19	80	13	61	42	17	0	40	1.49
5358854--5358901	24	2.0	24	100	0	96	16	45	8	29	1.76
5383333--5383474	42	3.4	42	84	2	187	15	21	19	44	1.87
5383358--5383457	21	4.8	21	70	0	74	14	19	19	48	1.82
5402849--5402875	2	13.5	2	100	0	54	51	0	0	48	1.00
5409629--5409677	20	2.5	20	89	0	71	34	10	6	48	1.62
5411476--5411820	101	3.4	98	76	8	279	34	12	21	31	1.91
5414235--5414417	96	1.9	97	83	7	239	42	4	15	37	1.67
5414462--5415004	126	4.3	126	91	0	872	32	18	22	26	1.97
5420414--5420463	22	2.3	21	76	10	55	48	2	28	22	1.62
5431206--5432957	875	2.0	875	99	0	3452	39	10	12	37	1.77
5448343--5448379	14	2.7	14	80	19	51	72	0	13	13	1.11
5449189--5449240	16	3.2	15	84	10	59	82	1	5	9	0.90
5449152--5449239	26	3.4	25	70	13	63	76	4	7	11	1.15
5463081--5463209	18	7.2	18	80	3	134	34	18	19	27	1.95
5464575--5464622	24	2.0	24	95	0	87	41	12	14	31	1.83
5474107--5474160	24	2.3	23	80	3	63	46	3	3	46	1.38
5479562--5479615	28	2.0	27	82	10	65	48	11	1	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5484997--5485056	5	12.2	5	84	10	79	36	0	1	61	1.06
5499215--5499265	23	2.3	23	86	3	68	49	21	0	29	1.50
5511241--5511267	14	1.9	14	100	0	54	22	11	29	37	1.89
5516521--5516613	28	3.4	28	77	3	98	29	12	21	36	1.91
5519274--5519332	31	1.9	31	89	0	91	45	11	5	37	1.63
5525639--5525685	8	5.3	9	82	14	62	78	8	0	12	0.95
5525636--5525685	18	3.0	15	78	21	55	80	8	0	12	0.92
5525688--5525721	14	2.4	14	95	0	59	79	0	14	5	0.91
5525673--5525745	27	2.8	25	81	8	74	79	1	10	8	0.99
5525698--5525752	6	9.3	6	80	11	60	81	0	12	5	0.84
5527674--5527707	8	4.1	8	88	7	50	73	0	14	11	1.10
5527669--5527708	17	2.3	18	86	8	64	72	0	12	15	1.12
5528917--5529054	44	3.1	44	65	12	111	27	26	22	23	2.00
5530146--5530759	44	13.8	44	66	11	212	30	20	21	28	1.98
5530009--5530631	316	2.0	311	86	4	871	31	19	21	27	1.97
5530419--5530696	87	3.2	86	71	10	267	29	21	19	29	1.98
5530333--5530804	175	2.7	175	93	1	786	30	20	20	27	1.98
5530855--5531033	95	1.9	95	92	2	306	26	17	22	32	1.96
5532950--5532974	2	12.5	2	100	0	50	52	0	0	48	1.00
5534755--5534892	44	3.2	42	66	15	118	25	24	23	26	2.00
5534786--5534924	44	3.2	44	65	15	115	24	20	28	26	1.99
5534962--5535098	43	3.2	43	63	13	100	21	21	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5534633--5535427	87	9.0	87	89	3	1030	24	24	22	28	1.99
5535251--5535427	98	1.8	98	96	0	327	22	25	23	28	1.99
5536662--5536697	6	5.7	6	87	12	54	13	16	0	69	1.19
5536654--5536697	20	2.2	20	92	8	72	13	15	0	70	1.17
5536654--5536698	7	6.6	7	87	7	58	13	15	0	71	1.15
5537043--5537141	49	2.0	49	86	0	135	10	8	7	74	1.21
5537045--5537131	43	2.0	43	84	8	115	10	6	8	74	1.21
5543004--5543040	2	18.5	2	94	0	65	48	0	2	48	1.15
5545975--5546005	2	15.5	2	100	0	62	48	0	0	51	1.00
5549514--5549769	124	2.1	124	86	2	352	30	16	22	31	1.95
5551298--5551384	40	2.2	39	78	10	95	35	1	20	42	1.60
5551355--5551410	29	1.9	29	96	0	103	26	1	28	42	1.65
5551321--5551399	40	2.0	41	89	2	124	26	0	29	44	1.55
5552783--5552829	22	2.2	21	84	3	58	68	2	0	29	1.02
5553007--5553059	22	2.4	23	78	6	65	35	0	30	33	1.58
5553178--5553217	20	2.0	20	90	0	62	50	7	10	32	1.64
5553166--5553232	34	1.9	35	84	3	91	46	10	8	34	1.70
5553666--5553722	29	2.0	29	82	6	71	28	15	15	40	1.88
5553776--5554067	143	2.0	144	96	2	543	18	32	28	20	1.96
5554846--5554886	21	2.0	21	90	9	66	4	17	0	78	0.93
5566634--5566666	16	2.0	17	88	5	50	63	0	3	33	1.10
5566937--5566978	19	2.2	20	82	4	50	26	11	4	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5574053--5574128	40	1.9	40	84	10	102	30	22	28	18	1.97
5574067--5574144	40	2.0	40	84	5	104	34	17	28	19	1.95
5579530--5579578	16	3.2	16	75	16	50	73	8	2	16	1.16
5589601--5589669	30	2.4	29	80	9	79	23	11	21	43	1.85
5591251--5591515	136	1.9	136	100	0	530	29	3	11	55	1.53
5591254--5591546	136	2.2	136	94	3	511	28	3	10	57	1.49
5593950--5594048	39	2.5	39	83	3	119	42	21	8	28	1.81
5603075--5603108	2	17.0	2	100	0	68	50	0	0	50	1.00
5603109--5603152	12	3.8	12	88	8	56	0	9	52	38	1.33
5603108--5603152	14	3.4	14	81	12	58	0	8	51	40	1.33
5603322--5603359	2	19.0	2	100	0	76	0	0	50	50	1.00
5603969--5604034	27	2.4	27	85	7	80	36	3	0	60	1.12
5610890--5610925	11	3.2	11	88	4	54	16	33	0	50	1.46
5610905--5611022	51	2.3	51	88	4	166	33	25	0	40	1.62
5611028--5611065	17	2.3	17	86	4	51	26	2	5	65	1.27
5612741--5612775	18	1.9	18	88	0	52	25	34	8	31	1.86
5617879--5618105	125	1.8	125	93	0	391	31	21	16	31	1.95
5618752--5618846	48	2.0	48	93	0	163	40	23	18	17	1.92
5619069--5619122	17	2.9	19	71	20	60	46	16	12	24	1.82
5624174--5624245	36	2.0	37	91	2	119	45	16	12	25	1.82
5630514--5630557	22	2.0	21	83	12	54	45	13	6	34	1.70
5633641--5633678	17	2.2	18	85	4	51	13	5	13	68	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5633650--5633697	23	2.1	23	84	0	60	16	4	16	62	1.48
5640716--5640851	68	2.0	69	97	1	256	44	0	19	35	1.56
5647479--5647669	51	3.8	51	72	11	176	30	28	15	25	1.96
5647477--5647661	101	1.8	102	85	3	266	31	27	16	24	1.96
5648904--5649167	122	2.2	122	86	2	352	28	16	23	31	1.96
5652385--5652440	22	2.5	22	94	0	94	57	16	14	12	1.66
5675168--5675213	20	2.3	20	85	3	58	50	23	13	13	1.76
5678164--5678188	12	2.1	12	100	0	50	68	0	0	32	0.90
5683720--5683767	22	2.1	21	88	11	69	72	2	14	10	1.19
5683926--5683959	16	2.1	16	88	0	50	26	5	0	67	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75