genome.fa.s11.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  50  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15984514--15985023	254	2.0	255	85	3	697	24	26	23	26	2.00
15986588--15986620	14	2.3	15	89	5	50	24	33	15	27	1.95
15990515--15990572	28	2.0	28	87	9	82	58	3	0	37	1.15
15990633--15990690	26	2.2	26	81	6	64	72	3	6	17	1.21
16013481--16013511	9	3.4	9	90	0	53	25	12	22	38	1.90
16013565--16013601	9	4.1	9	92	0	65	45	13	10	29	1.77
16014356--16014391	5	7.2	5	100	0	72	19	19	19	41	1.90
16020704--16020931	43	5.3	43	83	4	264	29	28	17	23	1.97
16020704--16020937	86	2.7	86	87	2	312	29	28	17	23	1.97
16021939--16022030	46	2.0	46	84	2	121	40	10	19	29	1.86
16024137--16024242	42	2.6	41	86	4	142	26	19	20	33	1.97
16024683--16024716	14	2.4	14	90	9	52	29	41	2	26	1.70
16024708--16024770	21	3.0	20	79	9	63	39	41	0	19	1.51
16024984--16025072	21	4.2	21	67	9	56	37	35	1	25	1.64
16025428--16025785	41	8.8	41	82	2	382	32	28	18	20	1.96
16025427--16025778	123	2.9	123	85	3	471	32	28	17	21	1.96
16025817--16025894	39	2.0	40	94	2	140	21	21	16	39	1.92
16031269--16031332	32	2.0	32	100	0	128	28	31	18	21	1.97
16032871--16033009	44	3.2	44	68	17	117	25	25	23	25	2.00
16032862--16033936	88	12.2	88	67	13	413	26	24	19	29	1.99
16033004--16033848	44	19.2	44	66	12	245	26	23	19	29	1.98
16032916--16033583	132	5.1	132	89	0	951	26	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16032809--16033309	220	2.3	220	80	6	489	27	24	19	28	1.98
16033201--16033935	352	2.1	352	90	0	1058	26	24	19	29	1.98
16033343--16033804	220	2.1	220	86	2	658	25	24	20	29	1.99
16033563--16033938	132	2.8	130	89	5	567	26	23	19	29	1.98
16032916--16033716	396	2.0	394	82	4	977	26	23	19	29	1.99
16033951--16034152	100	2.0	99	84	4	264	28	22	18	29	1.98
16034127--16034178	26	2.0	26	100	0	104	23	19	23	34	1.96
16034027--16034278	126	2.0	126	83	1	317	24	22	22	31	1.98
16034171--16034330	50	3.2	50	65	3	124	22	20	23	33	1.97
16034407--16034589	43	4.2	43	87	2	233	31	26	14	28	1.95
16035137--16035301	49	3.2	49	63	21	118	47	11	15	25	1.79
16036109--16036166	9	6.1	9	74	9	53	0	5	15	79	0.90
16036114--16036169	18	3.0	19	77	12	71	0	8	14	76	1.00
16051073--16051122	20	2.5	20	86	0	82	14	30	18	38	1.89
16065046--16065190	36	4.1	36	99	0	283	40	2	19	37	1.66
16065278--16065349	26	2.8	25	87	2	90	37	5	20	36	1.76
16070102--16070271	39	4.4	39	79	3	180	32	3	20	43	1.69
16070140--16070204	22	3.2	22	64	28	61	32	3	20	44	1.67
16073634--16073674	14	2.9	14	85	0	55	51	19	2	26	1.59
16074199--16074250	16	3.2	16	94	0	86	28	0	36	34	1.58
16074231--16074340	45	2.6	43	80	9	129	33	5	29	31	1.80
16074486--16074520	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16082991--16083026	3	12.0	3	87	0	54	36	2	0	61	1.11
16083309--16083362	25	2.1	26	82	3	65	44	9	3	42	1.54
16083817--16083959	72	2.0	72	88	2	216	29	16	17	37	1.91
16089138--16089187	18	2.8	19	79	11	61	76	0	22	2	0.89
16090406--16090722	100	3.2	99	90	0	490	32	19	20	27	1.96
16090407--16090773	50	7.3	50	78	0	340	32	18	20	28	1.96
16090676--16090776	51	2.0	51	86	3	141	29	12	24	32	1.93
16090860--16091096	123	1.9	123	85	3	325	30	14	26	27	1.95
16092334--16092373	17	2.3	18	86	4	55	20	7	0	72	1.08
16093184--16093227	3	14.7	3	90	0	70	34	2	0	63	1.07
16093425--16093467	22	2.0	22	85	0	59	13	20	23	41	1.88
16093562--16093693	43	3.1	43	95	1	239	28	31	18	21	1.96
16100741--16101410	44	15.6	43	71	11	426	31	21	20	26	1.98
16100744--16101410	85	7.8	84	71	9	341	31	21	20	26	1.98
16100737--16101427	129	5.4	129	92	0	1062	31	21	20	26	1.98
16101544--16101651	46	2.4	45	81	7	121	31	20	19	28	1.97
16101580--16102022	45	9.8	45	69	14	214	32	18	20	27	1.97
16101845--16101943	44	2.2	44	80	8	121	32	18	24	25	1.97
16102798--16102837	17	2.3	18	86	4	55	20	7	0	72	1.08
16103523--16103585	25	2.4	26	78	7	65	44	7	3	44	1.49
16105037--16105098	30	2.1	30	96	3	117	48	20	6	24	1.73
16106174--16106216	21	2.0	21	90	0	68	44	23	11	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16112732--16112874	72	2.0	72	91	0	232	44	15	10	30	1.80
16112748--16112860	36	3.1	36	69	9	104	45	15	8	30	1.77
16119156--16119187	15	2.1	15	100	0	64	25	18	25	31	1.98
16124419--16124464	24	1.9	24	86	0	65	45	17	26	10	1.81
16134610--16134646	17	2.2	17	90	0	56	37	29	10	21	1.88
16135588--16135630	13	3.2	13	83	12	52	74	2	0	23	0.93
16138561--16138948	195	2.0	195	94	0	686	32	28	11	26	1.91
16141433--16141483	19	2.8	18	77	11	50	56	3	0	39	1.18
16147371--16147401	2	15.5	2	100	0	62	48	0	0	51	1.00
16158132--16158170	3	13.0	3	100	0	78	0	33	0	66	0.92
16162912--16162982	36	2.0	36	91	0	115	40	19	7	32	1.79
16164077--16165334	629	2.0	629	100	0	2516	35	21	11	31	1.89
16165490--16165546	26	2.1	27	83	3	71	29	1	3	64	1.20
16165943--16165971	15	1.9	15	100	0	58	27	27	13	31	1.94
16168755--16168805	23	2.2	23	92	0	84	27	9	21	41	1.84
16171811--16171927	39	3.0	39	88	0	171	31	18	33	16	1.93
16184385--16184452	35	1.9	35	96	0	127	25	10	23	41	1.86
16187694--16187774	42	1.9	42	94	0	144	41	16	32	9	1.81
16192661--16192695	14	2.6	14	90	4	54	85	0	14	0	0.59
16194822--16194979	44	3.6	43	70	8	120	25	18	24	31	1.98
16205907--16205941	18	2.0	18	94	5	63	28	22	34	14	1.93
16207704--16207744	6	6.5	6	88	5	55	75	0	19	4	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16208191--16208231	13	3.1	14	82	10	50	9	0	17	73	1.09
16209114--16209144	16	1.9	16	100	0	62	64	0	6	29	1.18
16215328--16215375	23	2.1	23	84	0	60	18	4	35	41	1.70
16216501--16216554	21	2.8	20	91	8	85	38	11	14	35	1.82
16216503--16216562	21	3.0	21	77	22	67	40	10	16	33	1.82
16218899--16218932	16	2.1	16	88	0	50	17	17	23	41	1.90
16223945--16223977	9	3.7	9	100	0	66	81	9	0	9	0.87
16225225--16226386	45	25.8	45	83	1	1326	32	15	21	30	1.95
16226498--16226598	44	2.3	44	85	0	130	30	20	23	24	1.99
16228064--16228119	21	2.8	19	89	10	94	37	10	16	35	1.83
16228064--16228142	19	3.7	22	80	14	78	36	8	16	37	1.80
16228704--16228734	3	10.3	3	100	0	62	67	0	0	32	0.91
16237484--16237521	10	3.9	10	80	19	53	63	10	7	18	1.50
16237486--16237528	19	2.3	19	100	0	86	62	11	9	16	1.53
16245426--16245484	28	2.1	28	81	12	68	61	5	8	25	1.46
16249057--16249135	23	3.4	23	75	5	79	26	13	20	39	1.90
16249114--16249170	23	2.5	23	77	5	62	22	12	24	40	1.88
16253882--16253907	2	13.0	2	100	0	52	50	0	0	50	1.00
16254166--16254213	21	2.3	21	88	0	69	10	31	6	52	1.60
16260392--16260458	20	3.0	22	77	18	68	58	4	0	37	1.19
16260590--16260918	170	2.0	166	90	3	516	54	6	10	29	1.58
16262554--16262641	46	1.9	46	95	0	158	32	19	15	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16262616--16262767	44	3.5	43	75	12	127	29	21	17	31	1.96
16262694--16262783	44	2.0	44	93	0	153	30	22	17	30	1.97
16262834--16263335	44	11.5	44	67	13	143	28	20	19	32	1.97
16262829--16263335	175	2.9	175	94	0	856	28	20	18	32	1.96
16263272--16263362	44	2.0	44	85	2	119	24	25	19	30	1.98
16277063--16277142	25	3.2	25	77	5	83	33	20	25	21	1.97
16282824--16282855	15	2.1	15	94	0	55	15	6	9	68	1.36
16284496--16284545	20	2.7	19	80	20	61	42	2	2	54	1.23
16287424--16287569	72	2.0	74	97	2	278	32	23	4	40	1.73
16293675--16293757	29	2.8	29	83	10	96	40	13	9	36	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75