genome.fa.s11.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  44  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14111424--14111693	27	10.0	27	80	7	246	21	15	20	42	1.89
14111426--14111693	81	3.3	81	82	4	310	20	15	20	42	1.89
14113118--14113150	17	2.0	16	94	5	57	18	27	12	42	1.85
14113764--14113829	34	1.9	34	82	11	82	27	22	25	24	2.00
14114295--14114689	27	14.4	27	81	6	438	19	17	18	43	1.88
14115384--14115431	24	2.0	25	87	4	71	22	43	0	33	1.54
14115874--14115936	28	2.2	28	83	5	74	20	47	17	14	1.82
14115885--14115938	28	1.9	28	88	0	81	18	50	16	14	1.79
14118600--14118629	2	15.0	2	100	0	60	50	0	50	0	1.00
14125811--14125849	14	2.8	14	84	0	51	41	7	17	33	1.79
14136907--14136956	25	2.0	25	96	0	91	28	22	32	18	1.97
14140390--14140773	189	2.0	189	89	1	581	34	14	20	30	1.92
14144709--14144735	7	3.9	7	100	0	54	55	0	0	44	0.99
14152397--14152432	15	2.4	15	85	0	54	66	2	0	30	1.06
14152575--14152611	18	2.1	18	89	0	56	48	10	10	29	1.72
14153374--14153404	9	3.4	9	90	0	53	38	22	12	25	1.90
14153556--14153599	17	2.7	16	75	6	52	27	29	0	43	1.55
14154684--14154720	18	2.1	18	100	0	74	56	0	5	37	1.22
14172526--14172596	7	9.9	7	74	17	56	22	5	1	70	1.16
14173424--14173614	101	1.9	100	80	8	226	27	16	26	30	1.97
14173609--14173660	4	13.2	4	81	18	65	73	1	0	25	0.94
14173600--14173660	17	3.2	20	71	21	60	73	1	0	24	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14178170--14178417	131	1.9	131	82	2	300	46	10	5	37	1.61
14179224--14179265	15	2.8	15	79	10	50	30	0	4	64	1.14
14183125--14183214	13	6.9	13	87	0	117	30	7	27	34	1.85
14183438--14183484	20	2.5	19	75	6	51	55	2	2	40	1.24
14184146--14184177	7	4.6	7	96	0	55	53	15	31	0	1.43
14184176--14184220	21	2.1	21	83	0	54	40	17	31	11	1.85
14184124--14184229	52	2.0	52	82	7	126	43	17	32	6	1.75
14185155--14185329	72	2.4	73	82	6	221	54	12	6	26	1.63
14185751--14185798	18	2.7	18	96	0	87	39	12	12	35	1.81
14186868--14187110	107	2.2	106	89	9	355	36	9	6	47	1.62
14187089--14187125	15	2.5	15	100	0	74	43	0	5	51	1.24
14189072--14189242	19	8.1	19	68	21	90	50	21	24	2	1.62
14189082--14189317	25	10.2	25	73	15	220	50	23	23	2	1.63
14189085--14189330	44	5.5	44	86	8	334	50	22	23	2	1.62
14189129--14189335	69	3.0	69	74	6	213	50	23	23	2	1.62
14189294--14189333	19	2.1	19	90	0	62	47	17	30	5	1.69
14191893--14192186	90	3.3	90	76	5	272	34	13	25	27	1.93
14195946--14196071	34	3.6	36	84	6	170	45	13	7	34	1.71
14202154--14202246	44	2.1	46	87	4	136	37	27	4	30	1.76
14203709--14203756	4	12.0	4	100	0	96	50	25	0	25	1.50
14204287--14204319	16	2.1	16	88	5	50	54	15	0	30	1.41
14205113--14205150	15	2.4	16	82	8	51	65	2	2	28	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14207395--14207579	46	4.0	46	88	2	273	36	9	24	29	1.86
14209557--14209749	89	2.2	89	85	1	262	25	23	23	26	2.00
14209771--14210291	44	11.7	44	73	12	348	29	21	18	30	1.97
14209810--14210108	41	6.8	41	71	17	152	29	21	18	30	1.97
14209751--14210297	225	2.4	225	91	1	875	29	22	17	30	1.97
14217221--14217253	16	2.1	16	88	5	50	69	0	3	27	1.03
14218111--14218154	19	2.5	17	82	13	61	34	15	9	40	1.79
14218111--14218162	17	2.9	17	78	15	61	36	13	9	40	1.77
14218486--14218515	2	15.0	2	100	0	60	50	0	0	50	1.00
14220783--14220822	20	1.9	22	85	10	57	32	0	5	62	1.17
14221238--14221276	7	5.7	7	87	3	53	64	0	0	35	0.94
14221239--14221291	14	3.7	14	82	7	63	67	0	0	32	0.91
14223880--14223992	40	2.8	40	82	1	136	31	15	30	22	1.94
14223988--14224663	112	6.0	112	92	0	1082	28	19	26	25	1.98
14226075--14226351	84	3.3	84	95	0	509	32	21	18	27	1.97
14226213--14226719	253	2.0	254	99	0	998	31	19	17	31	1.95
14227928--14227956	11	2.7	11	94	5	51	37	10	24	27	1.88
14228714--14228911	17	10.6	17	73	23	150	45	11	1	41	1.49
14228731--14228940	40	5.4	40	73	22	196	44	9	1	43	1.47
14228705--14228911	57	3.6	57	100	0	414	45	10	1	42	1.47
14229008--14229152	72	2.0	72	95	0	263	48	2	7	42	1.43
14236297--14236408	56	2.0	56	94	0	197	17	20	14	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14236808--14237149	23	14.7	23	71	15	165	42	18	12	26	1.86
14236800--14237180	93	4.1	93	94	0	654	42	17	12	27	1.86
14236858--14237196	46	7.3	45	69	12	213	41	17	14	27	1.88
14237919--14238045	28	4.5	28	88	0	182	30	26	11	30	1.92
14240775--14240818	17	2.6	17	85	7	63	31	9	0	59	1.29
14241721--14241762	18	2.2	20	83	8	52	35	19	9	35	1.84
14246325--14246370	20	2.2	21	85	11	60	41	0	0	58	0.98
14251150--14251179	12	2.4	13	94	5	53	16	6	0	76	0.99
14251147--14251204	28	2.1	28	81	9	66	13	12	1	72	1.20
14251286--14251325	21	2.0	20	85	5	53	57	10	0	32	1.32
14253115--14253152	20	1.9	20	84	10	51	31	2	7	57	1.41
14253778--14253812	18	1.9	18	88	0	52	25	34	8	31	1.86
14254332--14254421	29	3.1	29	93	1	153	44	26	0	28	1.55
14254361--14254502	47	3.1	46	80	15	186	45	26	0	27	1.54
14254405--14254434	13	2.3	13	94	0	51	40	43	0	16	1.48
14254379--14254502	43	2.8	44	85	11	164	45	29	0	25	1.54
14254433--14254474	18	2.3	18	95	0	75	47	23	0	28	1.52
14254690--14254714	10	2.5	10	100	0	50	44	8	0	48	1.32
14270152--14270278	49	2.7	47	79	4	139	33	24	14	27	1.95
14270152--14270278	47	2.6	48	79	4	141	33	24	14	27	1.95
14272402--14272584	51	3.6	51	79	7	212	32	26	16	24	1.96
14272400--14272595	101	1.9	102	92	3	333	32	27	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14275411--14275436	13	2.0	13	100	0	52	38	15	7	38	1.76
14276583--14276623	18	2.2	19	91	4	66	80	7	0	12	0.90
14277183--14277216	11	3.1	11	100	0	68	47	0	0	52	1.00
14277456--14277496	21	1.9	22	95	5	75	82	4	0	12	0.81
14277573--14277601	15	1.9	15	100	0	58	48	37	0	13	1.43
14275852--14277580	878	2.0	863	94	2	2996	40	19	12	26	1.88
14279448--14279483	18	2.0	18	89	10	56	55	0	0	44	0.99
14280264--14280313	20	2.6	19	90	3	73	30	0	0	70	0.88
14280350--14280428	10	7.9	10	75	19	67	29	3	0	67	1.08
14286721--14286801	38	2.1	39	84	6	103	40	28	19	11	1.86
14288188--14288261	31	2.4	31	79	2	76	39	17	20	22	1.92
14288206--14288277	31	2.3	30	88	4	99	34	16	22	26	1.95
14288237--14288337	45	2.2	45	82	0	121	40	8	19	30	1.82
14294179--14294221	10	4.2	10	80	13	52	72	0	6	20	1.08
14294179--14294258	22	3.7	21	69	24	60	73	0	6	20	1.04
14294192--14294237	17	2.8	16	80	6	56	73	0	6	19	1.04
14294202--14294253	13	4.2	12	76	13	52	73	0	7	19	1.07
14294720--14294780	16	3.6	16	73	26	54	73	0	4	21	1.01
14299190--14299539	67	5.3	65	67	16	191	33	13	14	38	1.85
14299097--14299596	131	3.8	131	83	3	619	33	13	13	39	1.84
14299099--14299608	263	1.9	262	85	2	693	34	13	13	38	1.84
14299490--14299675	100	1.9	100	82	0	237	33	12	15	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14299490--14299698	100	2.1	100	80	1	231	32	12	15	38	1.86
14303745--14303828	23	3.6	23	71	15	64	39	5	3	51	1.44
14311895--14311949	25	2.2	25	83	0	65	40	18	20	21	1.92
14312001--14312070	26	2.8	25	80	4	86	32	22	27	17	1.96
14311916--14312084	25	6.8	25	69	14	100	34	21	26	17	1.96
14325176--14325291	58	2.0	58	100	0	232	36	15	10	37	1.82
14331443--14331570	68	1.9	68	91	3	213	47	7	25	20	1.75
14338323--14338353	10	3.2	10	95	4	55	29	0	0	70	0.87
14338323--14338360	18	2.0	20	85	10	53	31	0	0	68	0.90
14344087--14344265	3	59.7	3	100	0	358	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75