genome.fa.s11.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  61  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19601146--19601223	23	3.4	23	69	20	74	29	3	35	30	1.75
19604955--19605001	24	2.0	24	83	8	60	42	8	12	36	1.74
19614131--19614175	3	15.0	3	80	0	54	0	57	0	42	0.98
19614135--19614177	6	7.2	6	94	0	68	0	53	0	46	1.00
19614131--19614177	18	2.6	18	89	0	76	0	55	0	44	0.99
19620133--19620169	16	2.3	16	100	0	74	37	5	35	21	1.77
19620149--19620239	46	2.0	46	93	4	159	26	4	30	38	1.76
19620149--19620256	46	2.5	44	85	11	145	28	3	31	36	1.75
19625453--19625525	35	2.1	35	89	0	110	41	8	2	47	1.47
19630828--19630927	3	33.3	3	93	4	175	66	0	33	1	0.99
19634277--19634449	9	18.0	9	69	18	75	57	4	4	34	1.38
19635642--19635712	24	3.0	24	85	0	106	49	16	15	18	1.80
19638847--19638933	28	3.2	28	74	9	81	26	2	3	67	1.18
19638907--19638944	18	2.0	20	85	10	53	23	2	2	71	1.12
19641146--19641190	18	2.6	17	83	13	56	53	2	0	44	1.13
19641146--19641197	18	3.0	17	81	10	52	55	1	0	42	1.10
19644686--19644960	102	2.7	102	84	2	356	19	32	16	32	1.94
19645994--19646036	17	2.4	17	84	7	59	13	4	4	76	1.10
19646705--19646840	3	45.7	3	74	15	95	30	5	2	61	1.32
19646683--19646747	24	2.7	24	87	0	94	35	3	4	56	1.35
19646683--19646771	24	3.6	24	81	14	76	34	5	5	53	1.48
19652508--19652914	203	2.0	204	99	0	807	30	8	2	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19652879--19652994	41	3.1	35	68	20	90	32	0	4	62	1.21
19663375--19663408	17	1.9	17	88	5	50	38	14	0	47	1.45
19669402--19669475	38	1.9	38	94	0	130	31	27	16	25	1.96
19671323--19671369	20	2.3	20	96	0	85	51	6	14	27	1.67
19672358--19672398	18	2.3	18	82	0	55	80	2	9	7	0.99
19674223--19674256	4	8.2	4	93	6	59	50	0	0	50	1.00
19674355--19674392	16	2.2	18	86	9	53	28	0	7	63	1.23
19676356--19676404	22	2.2	23	82	10	57	71	4	2	22	1.13
19677920--19678078	44	3.7	41	73	9	122	27	20	23	28	1.99
19678116--19678945	50	16.7	50	67	3	312	25	20	20	32	1.97
19678094--19678953	100	8.6	100	81	4	812	25	20	21	32	1.98
19678094--19678935	397	2.1	399	86	1	1163	25	20	21	32	1.98
19680201--19680249	5	10.0	5	86	8	66	2	18	0	79	0.83
19683364--19683415	19	2.7	20	82	5	63	46	11	17	25	1.81
19687633--19687666	3	11.3	3	93	0	59	64	0	0	35	0.94
19688966--19689134	30	5.8	28	72	15	119	35	18	2	42	1.66
19688966--19689134	59	2.9	59	75	14	168	35	18	2	42	1.66
19689589--19689629	15	2.6	15	88	7	55	73	0	26	0	0.84
19689603--19689640	10	3.8	10	82	10	51	78	0	21	0	0.74
19689594--19689638	19	2.3	20	92	3	74	75	0	24	0	0.80
19689793--19689833	14	3.1	14	79	13	50	26	41	21	9	1.84
19689882--19689929	21	2.4	19	83	10	60	77	0	22	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19690041--19690088	3	16.0	3	87	8	71	68	0	31	0	0.90
19690042--19690101	12	4.8	12	82	13	59	75	0	25	0	0.81
19690237--19690275	9	4.3	9	87	9	53	79	0	20	0	0.73
19690232--19690278	15	3.2	15	82	14	62	78	0	21	0	0.75
19690403--19690479	35	2.2	35	79	9	84	22	6	7	63	1.44
19690482--19690515	10	3.5	10	84	8	52	29	2	0	67	1.05
19690421--19690498	34	2.3	32	85	14	95	23	6	7	62	1.45
19690742--19690781	18	2.2	18	86	0	53	35	7	10	47	1.65
19693628--19693679	25	2.1	25	100	0	104	42	15	19	23	1.89
19698226--19698268	11	3.7	11	85	11	52	81	9	9	0	0.88
19699110--19701122	79	25.7	76	78	9	1767	28	16	20	34	1.95
19699597--19699765	91	1.9	87	89	4	257	32	18	18	30	1.95
19699111--19701122	241	8.6	231	83	7	2053	28	16	20	34	1.95
19700223--19700467	91	2.9	88	81	13	273	30	17	20	31	1.95
19699110--19701102	626	3.2	627	87	5	2597	28	16	20	34	1.95
19700464--19700632	91	1.9	87	87	4	248	32	17	17	32	1.93
19700555--19701122	74	7.4	76	87	3	675	27	17	21	33	1.95
19701301--19701343	20	2.2	20	95	0	77	37	23	6	32	1.82
19701320--19701435	30	3.9	29	82	3	151	37	21	3	37	1.71
19701322--19701433	59	1.9	59	88	0	170	38	22	3	35	1.72
19701619--19701668	21	2.4	22	83	12	61	78	4	18	0	0.91
19702398--19702457	3	20.0	3	84	6	77	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19702399--19702457	18	3.4	18	90	9	97	74	0	25	0	0.82
19702764--19702825	32	1.9	33	93	3	108	19	9	8	62	1.50
19702822--19702855	10	3.5	10	84	8	52	29	2	0	67	1.05
19703083--19703121	17	2.3	17	90	0	60	38	5	10	46	1.60
19703140--19703198	19	3.1	18	76	13	55	35	15	6	42	1.73
19703356--19703733	18	20.8	19	70	18	163	31	12	10	44	1.77
19703432--19703497	17	3.7	18	76	8	62	34	9	15	40	1.78
19703518--19703713	17	11.3	16	72	13	122	28	12	10	48	1.74
19703517--19703712	52	3.8	52	81	6	202	28	12	10	48	1.74
19703691--19703746	21	2.8	20	86	5	76	41	8	8	41	1.68
19704435--19705499	44	24.6	43	68	13	425	26	20	20	31	1.98
19704573--19705285	129	5.5	129	89	2	997	26	21	21	31	1.98
19704573--19705288	257	2.8	257	88	2	992	26	21	21	31	1.98
19704871--19705499	213	2.9	211	83	5	585	27	20	21	31	1.98
19704568--19705370	257	3.1	257	84	4	955	26	21	21	31	1.98
19705271--19705507	129	1.8	129	91	0	393	28	18	21	31	1.97
19705944--19706138	108	1.8	107	85	3	275	45	9	17	27	1.79
19706461--19706506	17	2.6	18	93	6	76	4	17	0	78	0.91
19706461--19706507	6	7.8	6	81	13	53	4	17	0	78	0.90
19706942--19706989	21	2.3	21	89	3	71	10	4	8	77	1.12
19715982--19716007	2	13.0	2	100	0	52	50	0	0	50	1.00
19722926--19722992	27	2.4	27	78	9	73	52	2	0	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19738398--19738509	45	2.7	42	80	8	131	34	6	27	31	1.82
19738655--19738689	18	2.0	17	88	5	52	54	0	0	45	0.99
19749431--19749477	22	2.2	22	85	11	62	36	25	8	29	1.86
19754626--19754657	5	6.4	5	92	0	55	0	21	0	78	0.76
19755284--19755321	18	2.2	17	86	13	51	63	2	5	28	1.30
19758036--19758069	17	2.0	17	88	0	50	41	20	5	32	1.76
19761144--19761218	13	5.8	13	78	9	82	33	18	0	48	1.49
19761886--19761953	32	2.1	32	100	0	136	41	13	8	36	1.75
19766655--19766747	45	2.1	44	88	9	136	37	24	3	34	1.72
19766729--19766783	16	3.4	16	92	0	92	29	25	7	38	1.83
19767661--19767732	24	3.0	24	72	8	65	45	13	15	25	1.83
19770141--19770264	57	2.2	57	92	0	203	27	20	14	37	1.91
19776816--19776858	18	2.4	18	80	7	52	53	0	16	30	1.43
19777993--19778036	14	3.2	13	81	12	52	13	11	43	31	1.80
19781819--19781874	28	2.0	28	96	0	103	35	12	14	37	1.84
19785624--19785715	3	31.3	3	89	4	143	67	0	32	0	0.91
19785732--19785803	33	2.2	34	80	7	87	70	0	26	2	1.00
19785736--19785800	24	2.7	23	69	9	58	70	0	26	3	1.01
19785975--19786196	39	5.7	41	71	17	123	35	5	9	50	1.57
19785975--19786198	76	2.9	77	78	9	249	35	5	8	50	1.57
19786173--19786224	3	17.3	3	100	0	104	32	0	0	67	0.91
19788133--19789246	558	2.0	556	91	0	1816	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19792095--19792469	159	2.4	157	88	3	562	25	9	8	56	1.59
19792470--19792528	28	2.1	27	82	17	68	23	8	3	64	1.37
19792616--19792773	30	5.3	30	100	0	316	56	9	7	26	1.58
19792976--19793084	3	36.0	3	72	12	71	0	36	1	60	1.14
19793044--19793085	19	2.0	22	86	13	63	2	30	0	66	1.04
19801320--19801378	24	2.4	25	80	11	77	49	22	1	27	1.59
19801486--19801521	18	2.0	18	100	0	72	16	11	22	50	1.77
19803885--19803950	28	2.4	28	86	0	96	25	15	28	30	1.96
19807155--19807257	40	2.6	39	81	6	118	34	16	29	19	1.94
19807166--19807265	40	2.5	40	86	0	137	34	18	29	19	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75