genome.fa.s224.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  10  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851999--852045	25	1.9	24	82	4	58	44	12	6	36	1.68
852660--852732	36	2.0	36	94	0	128	36	13	8	41	1.75
853924--854476	153	3.8	144	79	7	490	41	14	13	29	1.84
860087--860137	11	4.6	11	78	7	50	1	3	7	86	0.77
860065--860137	32	2.2	33	85	7	96	1	6	8	83	0.86
860437--860535	30	3.3	30	69	10	76	31	19	17	32	1.94
860471--860788	143	2.2	144	77	6	331	35	15	15	33	1.89
865438--865633	102	2.0	97	90	7	306	39	15	19	26	1.91
866280--866327	25	2.0	25	87	4	71	45	8	6	39	1.59
866956--866986	16	1.9	16	93	0	53	38	6	0	54	1.26
869232--869458	107	2.1	108	81	4	260	52	17	14	14	1.74
869232--869475	36	6.8	36	75	9	192	52	18	14	14	1.75
869425--869522	47	2.1	47	90	0	151	55	22	11	11	1.67
869393--869558	83	2.0	83	83	2	208	54	19	12	12	1.69
870583--870800	121	1.8	120	84	3	303	18	16	10	54	1.70
870583--870922	132	2.7	124	82	8	352	18	16	11	53	1.72
884704--884762	11	5.5	10	80	11	55	79	1	15	3	0.94
884705--884763	25	2.3	25	82	8	66	79	1	15	3	0.94
886148--886713	144	3.9	143	75	6	493	33	14	13	39	1.85
893233--893324	9	10.2	9	75	6	53	77	0	16	6	0.97
894200--894326	63	2.0	63	90	3	202	40	18	9	32	1.82
894673--894793	42	2.8	42	85	5	145	38	16	12	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
895029--895069	22	2.0	21	86	13	59	34	12	12	41	1.80
895329--895361	16	2.1	16	100	0	66	42	9	18	30	1.81
895371--895599	67	3.4	67	77	4	230	35	17	17	30	1.92
895860--895912	18	2.9	19	86	8	74	24	20	9	45	1.81
896450--896693	35	7.0	35	78	1	204	18	18	14	49	1.79
896435--896693	70	3.7	70	76	8	249	17	17	13	50	1.78
896453--896687	105	2.2	105	82	1	292	17	18	13	50	1.78
896608--896781	88	2.0	88	82	2	215	18	15	10	55	1.69
896706--896760	18	3.1	18	75	15	69	23	16	9	50	1.73
896707--897043	35	9.5	35	71	11	186	19	17	11	51	1.76
896696--897033	71	4.8	71	79	4	319	19	16	10	52	1.73
896693--897033	142	2.4	141	80	4	398	19	16	11	52	1.73
896981--897089	55	2.0	55	87	0	155	17	21	13	47	1.82
897068--899389	35	66.3	35	69	11	673	19	18	12	50	1.77
897052--899371	70	33.1	70	72	9	832	19	17	12	50	1.77
897052--899382	105	22.2	105	71	10	850	19	17	12	50	1.77
897330--898427	386	2.8	384	78	6	970	19	17	12	50	1.78
899471--899511	21	2.0	21	90	0	64	85	12	2	0	0.70
899994--900476	145	3.4	144	77	6	444	33	13	11	40	1.81
902304--902343	3	13.3	3	89	0	53	57	0	7	35	1.27
905700--905742	18	2.5	17	84	3	50	41	30	9	18	1.82
905745--905814	6	10.4	7	71	20	51	42	41	0	15	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905766--905821	13	4.2	13	71	13	51	44	37	0	17	1.49
905767--905816	27	1.9	25	92	8	82	42	42	0	16	1.47
905853--905916	12	5.2	12	75	14	58	46	32	0	20	1.51
905875--905995	7	18.0	6	73	14	71	45	32	0	22	1.53
905852--905995	14	10.9	13	70	18	75	46	31	0	21	1.52
905875--905993	34	3.5	34	75	19	99	46	31	0	22	1.52
905865--905995	41	3.3	40	75	15	110	45	32	0	22	1.52
906858--906933	35	2.2	35	86	9	102	19	7	17	55	1.66
906974--907094	35	3.5	35	72	13	113	22	19	9	49	1.75
907221--907312	35	2.6	36	77	5	107	15	23	13	47	1.80
913394--914644	357	3.5	357	87	2	1703	35	12	15	36	1.86
916188--916223	6	6.0	6	86	0	54	16	16	33	33	1.92
924498--924554	3	19.0	3	92	0	96	64	3	0	31	1.10
925035--925104	31	2.2	33	84	5	90	48	22	5	22	1.72
925081--925141	19	3.2	20	84	9	65	47	19	6	26	1.74
926742--926780	19	2.1	19	95	0	69	43	5	7	43	1.55
936063--936100	3	12.7	3	100	0	76	65	0	0	34	0.93
936099--936123	3	8.3	3	100	0	50	32	0	0	68	0.90
936385--936418	14	2.4	14	90	9	52	23	2	0	73	0.97
938015--938060	24	1.9	25	82	8	60	26	21	17	34	1.95
941859--941889	2	15.5	2	100	0	62	48	0	0	51	1.00
944472--944508	16	2.3	16	90	0	56	54	5	5	35	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944479--944513	16	2.2	16	89	0	52	57	5	5	31	1.46
946079--946115	15	2.5	15	95	0	65	13	8	13	64	1.48
946400--946536	55	2.5	53	86	6	186	43	15	13	28	1.84
946569--946800	56	4.2	56	72	6	206	44	15	15	25	1.85
970577--970814	120	2.0	120	90	4	374	26	6	13	54	1.63
974000--974049	24	2.1	23	82	10	57	72	8	4	16	1.24
978027--978167	70	2.0	70	98	0	273	34	14	12	39	1.83
979934--979975	21	2.0	22	85	4	59	35	33	4	26	1.77
981683--981711	15	1.9	15	100	0	58	58	6	6	27	1.50
984993--985052	11	5.3	11	88	11	86	71	10	8	10	1.31
984993--985052	23	2.6	22	89	10	86	71	10	8	10	1.31
992848--992895	24	2.0	24	84	8	62	72	4	2	20	1.11
992887--992934	21	2.4	19	83	13	53	70	4	4	20	1.21
993964--994078	48	2.4	48	79	0	113	42	15	13	28	1.84
999701--999739	20	1.9	21	89	5	62	58	5	5	30	1.41
999702--999751	22	2.4	19	81	15	55	56	4	8	32	1.47
1008178--1008220	21	2.0	21	82	8	52	39	2	16	41	1.61
1008308--1008513	80	2.6	80	86	1	261	38	16	13	31	1.87
1009092--1009918	36	23.4	36	70	12	241	17	17	14	51	1.77
1009161--1010353	71	16.8	71	69	10	366	17	18	13	50	1.78
1009197--1009456	138	1.9	136	80	4	297	17	16	13	52	1.74
1009092--1010455	107	12.8	106	71	9	459	17	17	14	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009986--1010052	34	2.1	33	83	8	84	11	22	13	52	1.73
1010144--1010301	35	4.5	35	72	9	113	19	17	10	52	1.73
1010212--1010380	36	4.8	36	69	10	96	18	17	12	51	1.76
1010432--1010483	27	2.0	26	92	3	86	17	23	11	48	1.79
1010556--1010731	35	5.0	35	79	4	156	16	17	14	51	1.76
1010569--1010860	35	8.2	35	72	7	140	15	17	14	51	1.76
1010564--1010903	107	3.2	103	76	8	288	16	18	13	51	1.76
1011012--1011067	24	2.5	21	76	18	67	82	12	1	3	0.88
1011402--1011442	20	2.0	21	85	4	57	48	12	12	26	1.75
1012264--1012317	25	2.1	26	82	3	65	64	1	24	9	1.32
1017067--1017114	24	2.0	24	91	0	78	20	54	0	25	1.45
1026770--1026839	29	2.4	29	74	9	70	24	10	12	52	1.69
1029455--1029488	2	17.0	2	93	0	59	50	2	0	47	1.16
1039341--1039710	190	2.0	189	89	0	569	51	13	11	23	1.73
1040521--1040597	25	3.1	25	90	0	109	19	14	31	35	1.92
1044180--1044218	20	2.1	18	86	13	53	56	10	15	17	1.66
1052169--1052251	42	2.0	42	90	0	130	42	16	9	31	1.81
1053377--1053416	20	2.0	20	100	0	80	40	10	10	40	1.72
1053420--1053472	26	2.0	26	96	0	97	26	3	24	45	1.70
1057946--1058000	20	2.7	20	91	5	83	41	5	10	41	1.63
1060597--1060636	17	2.3	18	86	4	55	30	15	10	45	1.78
1062090--1062139	21	2.4	20	83	6	64	54	8	6	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1062802--1062851	19	2.7	19	84	3	66	42	12	20	26	1.86
1077231--1077307	40	1.9	40	92	5	129	25	12	19	41	1.87
1079611--1079679	36	1.9	36	85	11	97	30	13	7	49	1.68
1084077--1084110	15	2.2	16	89	5	52	88	0	8	2	0.62
1085873--1085905	17	1.9	17	88	11	50	45	3	0	51	1.16
1089319--1089355	18	2.1	18	94	0	65	48	0	0	51	1.00
1089503--1089550	7	6.6	7	80	15	53	14	0	2	83	0.74
1089505--1089550	17	2.8	16	83	9	56	15	0	2	82	0.76
1089551--1089825	49	5.8	47	77	13	244	35	21	15	27	1.93
1089551--1089774	49	4.6	49	83	6	265	34	22	15	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64