genome.fa.s224.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  60  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10021301--10021353	28	1.9	27	88	3	79	43	16	15	24	1.87
10033433--10033482	24	2.1	24	85	7	66	42	0	0	58	0.98
10039008--10039061	18	2.8	20	80	11	67	42	1	0	55	1.10
10039002--10039053	18	2.9	18	82	2	61	40	1	1	55	1.22
10041705--10041770	26	2.3	29	80	14	68	53	3	1	42	1.25
10042291--10042324	16	2.1	16	88	0	50	55	2	0	41	1.15
10042511--10042552	19	2.2	19	95	0	75	26	16	14	42	1.86
10042892--10042940	24	2.0	24	88	7	73	65	0	6	28	1.16
10042891--10042940	11	4.2	12	75	12	50	64	0	6	30	1.18
10043027--10043093	32	2.1	32	82	0	80	52	2	1	43	1.25
10044858--10044895	17	2.3	17	95	4	69	57	0	0	42	0.98
10046429--10046463	17	2.0	18	88	5	54	62	0	5	31	1.18
10046431--10046483	23	2.5	21	79	11	56	62	0	3	33	1.13
10053738--10053799	32	1.9	33	83	9	83	41	1	4	51	1.33
10058247--10058741	252	2.0	253	92	0	832	35	12	5	46	1.66
10065278--10065306	15	2.0	15	93	6	51	31	6	13	48	1.69
10066867--10066904	16	2.3	17	86	4	51	52	0	0	47	1.00
10068672--10068696	12	2.1	12	100	0	50	48	0	0	52	1.00
10071984--10072032	24	2.1	23	92	3	80	44	2	0	53	1.12
10072482--10072506	13	1.9	13	100	0	50	0	0	4	96	0.24
10072700--10072775	31	2.6	30	91	6	120	32	15	9	42	1.79
10082577--10082606	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10082606--10082630	2	12.5	2	100	0	50	48	0	0	52	1.00
10088150--10088207	26	2.2	25	77	14	64	50	1	1	46	1.22
10088186--10088224	19	2.0	21	90	10	64	43	0	2	53	1.14
10089133--10089187	8	7.0	8	80	14	53	52	0	0	47	1.00
10089137--10089185	14	3.3	14	77	11	53	53	0	0	46	1.00
10089240--10089278	12	3.2	12	82	7	51	56	0	0	43	0.99
10092458--10092514	19	3.0	19	82	5	62	45	1	1	50	1.22
10095556--10095591	16	2.2	16	90	9	56	33	0	16	50	1.46
10096274--10096439	79	2.1	79	100	0	332	10	19	19	50	1.77
10102185--10102228	19	2.6	16	82	13	52	36	0	6	56	1.26
10106103--10106153	19	2.7	20	87	3	61	64	0	5	29	1.17
10106116--10106153	19	2.0	19	94	0	67	71	0	2	26	1.00
10109581--10109616	12	3.0	12	95	0	63	0	30	25	44	1.54
10111624--10111746	63	2.0	63	88	0	183	30	21	22	25	1.98
10111689--10112170	196	2.5	193	83	2	615	28	20	28	22	1.99
10111228--10112434	454	2.6	456	83	5	1392	28	20	28	22	1.99
10112102--10112236	66	2.0	66	85	0	180	28	20	30	21	1.98
10115094--10115150	21	2.7	21	76	12	64	31	12	0	56	1.36
10115567--10115593	6	4.5	6	100	0	54	51	14	18	14	1.76
10137431--10137466	3	12.0	3	100	0	72	66	0	0	33	0.92
10138451--10138510	27	2.2	28	84	3	77	48	0	10	41	1.37
10138462--10138502	21	2.0	21	85	9	57	48	0	7	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10138941--10139018	34	2.3	36	78	17	94	53	0	0	46	1.00
10138936--10139048	29	4.2	26	77	13	95	53	0	0	46	1.00
10138967--10139046	34	2.3	36	84	4	101	51	0	0	48	1.00
10139781--10139818	10	3.7	10	89	6	58	65	2	0	31	1.06
10141942--10141973	2	16.0	2	93	0	55	53	0	0	46	1.00
10144143--10144174	16	2.0	16	93	0	55	34	0	0	65	0.93
10145354--10145415	14	4.4	14	72	6	54	61	0	0	38	0.96
10146624--10146678	18	3.2	17	80	12	58	34	0	0	65	0.93
10146701--10146749	23	2.0	25	84	7	66	48	0	0	51	1.00
10152731--10152768	17	2.3	17	86	4	60	42	0	5	52	1.24
10166658--10166693	13	2.9	12	88	8	54	38	0	0	61	0.96
10166621--10166693	24	3.0	24	77	13	69	34	4	1	60	1.24
10168378--10168430	22	2.3	24	81	12	67	35	0	7	56	1.28
10168447--10168491	10	4.6	10	80	5	56	62	2	0	35	1.08
10168449--10168491	19	2.2	20	87	4	61	65	2	0	32	1.06
10169269--10169320	22	2.4	21	78	12	61	57	1	0	40	1.10
10171238--10171275	13	3.1	12	85	14	51	73	0	0	26	0.83
10171256--10171354	41	2.4	42	80	9	114	56	0	0	43	0.99
10172124--10172183	30	2.0	30	96	0	111	40	6	15	38	1.73
10177694--10177731	18	2.1	18	100	0	76	47	21	5	26	1.71
10194156--10194181	3	8.7	3	100	0	52	34	0	30	34	1.58
10194829--10194872	22	2.0	22	95	4	81	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10195656--10195713	21	2.8	21	82	15	59	48	1	0	50	1.11
10196371--10196416	22	2.1	21	84	4	56	52	2	2	43	1.25
10197498--10197533	13	2.8	13	95	0	63	33	13	19	33	1.91
10197725--10197776	14	3.6	14	75	15	52	65	0	0	34	0.93
10198165--10198210	22	2.1	21	84	11	58	36	0	2	60	1.09
10198177--10198217	20	2.0	21	85	4	57	43	0	4	51	1.23
10208079--10208121	10	3.7	12	87	9	54	48	0	0	51	1.00
10208105--10208161	24	2.4	24	77	16	64	54	3	0	42	1.17
10208172--10208243	30	2.5	28	81	18	78	34	1	0	63	1.03
10208219--10208246	8	3.5	8	100	0	56	35	0	0	64	0.94
10208502--10208535	2	17.0	2	100	0	68	0	50	0	50	1.00
10219944--10219976	17	1.9	17	93	0	57	69	3	3	24	1.16
10219939--10219990	22	2.4	22	81	15	63	69	1	1	26	1.10
10220417--10220476	32	1.9	32	83	6	79	68	5	8	18	1.34
10223794--10223830	19	2.0	19	89	5	58	16	0	5	78	0.93
10224392--10224422	12	2.6	12	94	0	53	64	3	0	32	1.09
10224905--10225228	89	3.7	87	77	5	296	50	14	10	24	1.75
10224899--10225223	43	7.4	43	77	5	247	50	14	10	24	1.74
10227262--10227287	13	2.0	13	100	0	52	15	0	7	76	0.99
10227423--10227537	56	2.1	56	81	3	133	27	7	7	56	1.55
10227995--10228058	25	2.5	24	78	16	67	43	9	4	42	1.57
10230531--10230564	3	11.0	3	93	6	59	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10230624--10230666	19	2.3	19	91	0	68	27	0	0	72	0.85
10230624--10230666	18	2.4	19	84	7	54	27	0	0	72	0.85
10231755--10231798	2	22.0	2	90	0	70	50	0	0	50	1.00
10232283--10232333	26	1.9	26	84	4	66	39	0	9	50	1.35
10233315--10233343	2	14.5	2	100	0	58	51	0	0	48	1.00
10235437--10235484	23	2.1	23	92	0	78	39	16	4	39	1.68
10237267--10237301	18	1.9	18	88	0	52	51	0	0	48	1.00
10237413--10237468	20	2.8	19	81	5	67	28	7	0	64	1.20
10237413--10237454	19	2.2	20	86	4	59	26	7	0	66	1.17
10238827--10238878	21	2.4	23	81	12	65	46	0	0	53	1.00
10238836--10238936	52	1.9	53	82	6	125	50	0	0	48	1.07
10238874--10239141	130	2.1	130	97	0	509	44	6	1	47	1.38
10240704--10240809	56	1.9	56	80	3	124	52	0	0	46	1.06
10240855--10240912	12	4.8	12	79	12	57	51	1	0	46	1.11
10240865--10240937	18	4.0	18	77	8	67	53	2	0	43	1.15
10241356--10241390	15	2.3	15	90	0	52	65	28	0	5	1.15
10251827--10251862	17	2.2	16	90	5	54	25	2	2	69	1.15
10251833--10251869	16	2.3	17	86	9	51	32	5	0	62	1.18
10255269--10255293	6	4.2	6	100	0	50	84	0	0	16	0.63
10255695--10255741	19	2.6	19	81	15	55	10	4	2	82	0.88
10264094--10264119	2	13.0	2	100	0	52	50	0	0	50	1.00
10264340--10264370	15	2.1	15	93	0	53	64	12	6	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10277972--10278007	17	2.1	17	90	10	56	44	0	0	55	0.99
10278537--10278601	30	2.2	29	86	2	85	44	3	0	52	1.16
10279274--10279311	6	6.5	6	87	6	51	52	5	0	42	1.24
10282581--10282625	15	3.1	14	87	6	54	62	20	0	17	1.33
10282709--10282738	11	2.7	11	94	0	51	63	10	10	16	1.51
10287320--10287357	19	2.1	19	90	5	60	52	0	0	47	1.00
10290668--10290706	20	2.0	20	85	10	53	46	0	2	51	1.14
10294847--10294923	33	2.3	33	78	12	86	53	0	3	42	1.19
10295777--10295816	12	3.4	12	82	6	55	10	5	55	30	1.54
10300373--10300416	3	14.7	3	95	0	79	31	0	36	31	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64