genome.fa.s224.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  13  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1494184--1494226	21	2.1	20	86	4	59	2	0	13	83	0.74
1494190--1494221	15	2.1	15	94	0	55	0	0	15	84	0.63
1494198--1494236	20	2.0	20	85	10	53	0	2	12	84	0.72
1494190--1494249	15	4.3	14	77	14	52	1	3	11	83	0.84
1494332--1494553	84	2.6	84	82	2	250	41	16	12	29	1.85
1494601--1494662	22	2.8	22	75	0	70	35	17	20	25	1.95
1494650--1494976	105	3.1	106	85	6	429	33	12	17	35	1.88
1494861--1495252	126	3.1	124	81	5	459	33	12	17	36	1.87
1495192--1495233	22	1.9	22	85	9	59	23	2	33	40	1.68
1496780--1496820	17	2.3	18	87	4	57	70	0	4	24	1.06
1497092--1497132	19	2.1	20	86	4	57	9	2	14	73	1.19
1497421--1497479	22	2.7	22	86	0	64	33	15	23	27	1.95
1497490--1497801	105	3.0	105	83	8	395	35	12	16	35	1.87
1497762--1497813	22	2.4	22	72	18	54	28	13	25	32	1.93
1497656--1498035	125	3.0	124	82	5	419	32	13	18	35	1.90
1497892--1497941	22	2.3	22	90	10	77	26	12	26	36	1.91
1497914--1498155	104	2.3	104	81	6	294	34	14	16	34	1.89
1499986--1500143	88	1.8	84	82	8	201	17	17	8	56	1.65
1510651--1510693	23	1.9	22	85	4	59	25	23	20	30	1.99
1511015--1511376	33	11.0	34	71	10	198	31	17	19	32	1.95
1511039--1511355	33	9.7	32	73	9	201	31	16	18	33	1.94
1511072--1511151	32	2.6	30	77	13	90	35	18	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511015--1511353	66	5.1	66	74	8	280	31	16	18	33	1.94
1513525--1513562	12	2.9	13	80	11	51	73	7	0	18	1.06
1524153--1524177	2	12.5	2	100	0	50	48	0	0	52	1.00
1524538--1524587	27	1.9	26	84	8	66	22	18	0	60	1.37
1526361--1526602	116	2.1	116	95	1	432	41	10	7	40	1.69
1526419--1526602	57	3.2	56	66	14	149	40	11	7	40	1.68
1535036--1535064	14	2.0	15	93	6	51	34	0	0	65	0.93
1536834--1536876	18	2.3	18	85	14	61	18	0	2	79	0.85
1542023--1542202	39	4.6	39	66	13	127	23	34	23	18	1.96
1541959--1542282	117	2.8	117	93	0	549	23	33	24	18	1.97
1542176--1542361	80	2.3	79	93	0	309	23	33	24	18	1.97
1542059--1542504	198	2.3	199	94	2	785	22	34	24	18	1.96
1542256--1542479	118	1.9	118	94	1	396	23	34	24	18	1.96
1542479--1542529	25	2.0	25	100	0	102	15	45	23	15	1.85
1546266--1546312	25	2.0	22	88	12	67	63	0	17	19	1.30
1552424--1552451	14	2.0	14	100	0	56	57	0	0	42	0.99
1552422--1552456	14	2.6	13	86	8	52	60	2	0	37	1.12
1552512--1552561	19	2.5	20	81	15	59	30	0	0	70	0.88
1554425--1554459	18	2.0	18	88	5	54	42	37	5	14	1.69
1555657--1555699	10	4.6	9	80	8	50	81	0	0	18	0.69
1555991--1556027	17	2.2	17	86	13	51	64	5	5	24	1.36
1557636--1557699	4	16.0	4	80	6	67	28	3	3	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557652--1557708	8	7.3	7	81	15	51	28	1	3	66	1.18
1565977--1566236	131	2.0	131	93	1	450	40	5	10	43	1.63
1573659--1573715	28	2.0	28	86	6	80	73	0	17	8	1.07
1579869--1579911	20	2.1	21	95	4	79	30	25	9	34	1.87
1584519--1584556	5	8.0	5	82	11	53	78	2	0	18	0.86
1584519--1584556	9	4.0	10	83	13	53	78	2	0	18	0.86
1584518--1584556	14	2.8	14	88	11	62	79	2	0	17	0.84
1584988--1585031	22	2.0	22	81	0	52	29	36	4	29	1.77
1585387--1585426	3	13.7	3	94	5	73	70	0	0	30	0.88
1585493--1585521	3	9.7	3	100	0	58	34	0	31	34	1.58
1585603--1585665	26	2.5	24	80	7	72	30	23	25	20	1.99
1585615--1585663	26	1.9	26	87	4	73	26	24	28	20	1.99
1587063--1587166	53	2.0	53	94	0	181	38	5	17	38	1.74
1588518--1588542	13	1.9	13	100	0	50	64	0	16	20	1.30
1588755--1588806	21	2.5	21	80	0	59	51	15	3	28	1.60
1589793--1589962	17	9.8	17	68	22	79	35	15	15	33	1.89
1589884--1589986	35	3.0	35	84	1	136	31	17	18	33	1.94
1589892--1589989	17	5.7	17	73	5	72	30	16	19	33	1.94
1589995--1590091	17	5.8	17	73	7	72	35	13	15	36	1.87
1590057--1590108	17	3.1	17	83	8	70	36	17	13	32	1.89
1589994--1590160	34	4.9	34	71	10	108	36	11	16	34	1.86
1589995--1590121	67	1.9	67	83	3	166	35	13	16	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590487--1590571	22	3.8	22	79	13	93	48	14	3	34	1.61
1590486--1590555	22	3.0	23	85	6	97	47	15	1	35	1.55
1590615--1590705	45	2.0	45	87	2	130	46	15	6	31	1.71
1597001--1597081	19	4.2	19	69	1	54	22	11	23	43	1.85
1598539--1598601	31	2.0	31	90	0	99	44	11	1	42	1.49
1599661--1599788	35	3.7	35	79	2	150	16	10	14	59	1.61
1600233--1600257	11	2.3	11	100	0	50	0	0	8	92	0.40
1600588--1600654	8	8.1	8	78	14	57	1	1	16	80	0.86
1600588--1600654	22	3.1	22	77	12	75	1	1	16	80	0.86
1600713--1600872	35	4.6	34	73	6	115	55	13	13	17	1.69
1600707--1600814	35	3.1	34	81	6	119	54	15	12	16	1.71
1600786--1600915	69	1.9	69	85	0	179	53	16	15	15	1.74
1601152--1601222	35	2.0	35	86	10	101	28	16	18	36	1.93
1601161--1601317	33	4.7	33	77	10	117	30	15	15	38	1.89
1601156--1601375	99	2.2	98	79	15	238	31	15	15	37	1.88
1601418--1601581	32	5.1	32	79	10	181	32	15	19	32	1.93
1601418--1601589	66	2.7	65	78	7	190	32	14	20	32	1.93
1601726--1602008	33	8.6	33	74	15	160	30	18	18	32	1.95
1601833--1602018	64	2.9	63	71	14	155	30	19	18	31	1.96
1603170--1603230	10	6.0	10	76	3	59	3	16	1	78	0.96
1604763--1605009	33	7.5	34	76	12	149	31	19	16	31	1.94
1606694--1606750	6	8.4	7	76	17	50	1	14	0	84	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1606700--1606747	8	5.6	8	79	13	51	2	14	0	83	0.74
1606694--1606750	14	4.2	14	82	6	73	1	14	0	84	0.71
1607587--1607635	23	2.1	23	88	0	71	2	16	2	79	0.92
1611275--1611328	22	2.7	20	78	15	58	70	5	1	22	1.18
1613893--1614058	35	4.7	35	80	1	179	8	15	19	56	1.65
1613892--1614058	70	2.4	71	83	2	210	8	15	19	56	1.65
1615622--1615673	22	2.4	22	87	6	70	53	1	9	34	1.45
1617529--1617612	21	4.0	21	79	1	69	64	4	13	17	1.45
1617558--1617610	7	7.6	7	87	8	81	60	3	11	24	1.47
1619420--1619459	21	2.0	21	85	14	57	22	2	5	70	1.19
1620121--1620168	20	2.4	20	82	0	60	45	8	2	43	1.45
1621188--1621252	21	3.1	20	84	6	76	50	3	24	21	1.63
1621649--1621876	43	5.2	43	76	4	206	41	17	11	29	1.85
1621644--1621880	86	2.7	86	82	5	271	42	16	11	28	1.84
1635704--1635885	77	2.3	78	87	4	262	56	4	25	13	1.57
1635829--1635885	15	3.7	14	76	19	60	61	0	29	8	1.26
1635833--1635881	17	3.0	17	79	5	57	63	0	28	8	1.23
1643303--1643353	23	2.3	21	75	18	50	27	17	3	50	1.63
1647102--1647186	33	2.5	35	79	12	97	63	0	21	15	1.30
1650061--1650133	29	2.4	29	84	4	92	34	13	5	46	1.67
1654953--1655029	41	1.9	41	83	2	102	41	25	7	24	1.82
1658623--1658660	19	2.0	19	89	0	58	15	28	21	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661173--1661217	21	2.1	21	87	0	63	44	4	15	35	1.67
1661209--1661295	43	2.0	43	82	6	104	41	9	5	43	1.60
1661540--1661620	38	2.1	38	84	4	101	40	13	8	37	1.75
1668429--1668461	16	2.1	16	88	11	50	15	24	12	48	1.78
1670408--1670513	53	2.0	53	100	0	212	39	9	15	35	1.79
1671611--1671669	15	3.8	15	75	18	50	84	6	5	3	0.85
1675424--1675459	18	2.0	18	88	0	54	0	8	5	86	0.72
1678426--1678462	16	2.4	16	86	8	51	67	10	10	10	1.42
1695903--1695934	14	2.1	16	88	11	50	40	25	9	25	1.85
1698827--1698864	16	2.4	16	91	4	60	26	0	0	73	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64