genome.fa.s224.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  5  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329907--329955	12	4.3	12	77	15	50	46	0	0	53	1.00
329902--329957	21	2.7	21	88	5	78	48	0	0	51	1.00
330897--330947	26	2.0	24	88	7	75	45	0	3	50	1.20
331142--331204	18	3.6	17	78	16	60	47	1	0	50	1.10
331138--331204	11	5.7	12	72	8	57	46	1	0	52	1.09
331166--331218	23	2.3	22	84	12	63	50	1	0	47	1.12
331669--331715	21	2.4	19	86	10	60	48	0	0	51	1.00
331689--331725	13	2.6	14	87	12	58	54	0	2	43	1.14
331813--331845	17	1.9	17	88	11	50	39	0	0	60	0.97
335503--335674	58	2.9	57	83	10	193	33	12	7	47	1.69
335754--335800	22	2.1	22	92	0	76	80	2	0	17	0.80
335751--335801	13	3.7	13	80	12	57	80	1	0	17	0.81
336244--336289	22	2.0	23	83	4	58	58	19	0	21	1.39
336537--336589	20	2.6	20	74	14	54	62	1	3	32	1.24
336529--336688	51	3.4	49	79	13	151	59	1	4	35	1.25
336633--336696	20	3.4	20	77	20	75	64	0	0	35	0.94
336529--336722	16	11.6	16	70	20	78	61	1	4	32	1.24
336671--336730	5	12.0	5	86	10	63	73	1	1	23	1.01
340761--340828	21	3.3	21	73	19	79	13	26	33	26	1.93
340765--340829	20	3.2	20	72	20	71	12	26	33	27	1.92
340734--340830	41	2.4	41	91	0	149	12	23	32	30	1.92
341810--341877	34	2.0	32	83	13	82	48	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341838--341923	21	3.8	24	74	20	85	43	0	1	55	1.07
342384--342462	24	3.3	24	73	21	69	51	1	0	46	1.08
342675--342738	32	2.1	29	82	11	74	42	4	0	53	1.22
342791--342849	14	3.7	16	75	20	61	40	0	0	59	0.97
342805--342938	69	1.9	70	81	14	163	46	1	0	51	1.15
342903--342941	13	2.7	15	80	15	55	43	0	0	56	0.99
343070--343116	16	3.1	14	80	19	51	55	2	0	42	1.12
343231--343280	21	2.4	21	80	6	57	56	0	0	44	0.99
343672--343703	17	1.9	16	93	6	55	34	0	6	59	1.23
344431--344481	21	2.3	22	83	6	59	58	0	0	41	0.98
344522--344548	10	2.7	10	100	0	54	48	0	0	51	1.00
344843--344881	20	2.0	20	84	0	51	46	2	5	46	1.38
345148--345196	21	2.3	22	82	10	66	40	2	0	57	1.10
345317--345365	19	2.8	17	87	9	71	55	0	2	42	1.11
345574--345621	21	2.4	21	82	6	64	45	0	0	54	0.99
345585--345628	21	2.0	23	86	8	65	45	0	2	52	1.13
345651--345729	31	2.5	33	78	15	87	50	0	3	45	1.19
346699--346786	10	8.2	10	70	19	54	48	2	0	48	1.13
346750--346793	22	2.0	23	86	13	65	50	0	0	50	1.00
347520--347588	31	2.2	32	84	7	88	44	0	2	52	1.16
347665--347710	21	2.0	21	84	12	56	54	0	0	45	0.99
348275--348320	14	3.4	14	76	11	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348473--348514	22	1.9	22	85	0	57	57	2	2	38	1.25
350341--350419	8	10.1	8	71	23	53	49	0	1	49	1.09
350364--350403	17	2.4	17	83	4	55	45	0	2	52	1.14
350327--350419	21	4.6	20	72	12	73	49	1	1	48	1.15
350579--350613	17	1.9	18	88	11	54	42	0	5	51	1.25
351004--351094	38	2.4	39	85	10	127	53	0	2	43	1.12
351320--351382	28	2.2	29	80	11	76	55	1	1	41	1.19
351697--351742	16	2.9	16	83	3	67	43	4	0	52	1.21
351816--351858	22	2.0	22	86	9	61	53	6	0	39	1.28
352262--352302	15	2.6	16	81	18	50	56	2	2	39	1.26
352308--352363	25	2.3	25	81	9	62	51	1	1	44	1.22
352330--352427	9	9.7	10	69	28	50	48	0	1	50	1.07
352723--352762	13	3.2	13	82	7	55	65	0	0	35	0.93
352724--352762	12	3.2	12	85	3	51	64	0	0	35	0.94
352740--352859	7	15.8	8	68	26	59	50	1	0	47	1.17
352748--352859	29	3.7	31	75	18	103	49	1	0	48	1.18
352748--352843	33	3.1	32	79	13	94	50	2	1	46	1.20
352804--352875	13	5.2	13	70	18	56	51	0	1	47	1.09
353185--353232	14	3.3	14	77	8	51	33	2	6	58	1.35
353671--353721	19	2.6	19	81	9	59	41	0	1	56	1.10
353825--353864	19	2.0	21	90	9	66	47	0	5	47	1.24
353867--353911	21	2.2	20	88	8	63	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354274--354332	23	2.5	24	81	15	70	54	0	0	45	0.99
354285--354338	11	4.7	11	84	8	56	53	0	0	46	1.00
354278--354378	12	8.8	12	75	10	61	48	0	0	49	1.14
354510--354560	26	2.0	26	88	3	77	52	0	0	47	1.00
354709--354755	11	4.3	11	79	15	53	38	0	2	59	1.09
355209--357439	181	12.4	181	73	10	1140	42	9	7	39	1.67
357533--359355	361	5.1	355	75	8	1373	41	10	8	40	1.69
359079--359114	16	2.2	17	90	5	56	61	0	0	38	0.96
357474--359355	181	10.5	180	74	7	1118	41	10	8	40	1.69
359358--359449	46	2.0	44	82	12	107	51	2	3	43	1.30
360455--361897	181	8.0	181	75	7	1019	41	8	9	41	1.67
360472--361835	362	3.8	359	78	6	1257	41	8	9	41	1.66
361922--362606	180	3.8	178	78	5	596	42	8	8	41	1.65
362590--362622	18	1.9	17	88	11	50	48	3	6	42	1.43
363234--363283	19	2.5	20	81	12	59	44	2	0	54	1.11
363449--363499	24	2.1	25	85	7	70	43	5	0	50	1.26
363585--363652	27	2.5	28	81	15	81	50	2	0	47	1.16
363909--363961	20	2.5	22	90	9	83	47	5	3	43	1.45
364624--364675	21	2.4	23	81	12	65	46	1	0	51	1.12
365550--365618	24	2.8	26	81	14	69	47	1	0	50	1.09
365565--365671	32	3.2	33	77	14	94	49	0	0	49	1.07
365578--365631	23	2.3	23	78	6	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365649--365713	27	2.3	30	75	17	77	44	1	3	50	1.26
365803--365847	15	2.9	17	84	12	53	55	0	0	44	0.99
366159--366190	16	1.9	17	93	6	57	50	3	0	46	1.17
366422--366459	19	2.0	19	89	0	58	57	0	0	42	0.98
366735--367346	182	3.4	180	79	7	634	44	8	7	39	1.63
367611--368544	181	5.2	179	77	9	776	42	9	7	39	1.66
367594--368520	362	2.6	361	81	5	985	42	9	7	39	1.66
368836--368875	16	2.3	19	87	12	59	45	2	0	52	1.14
368833--368880	22	2.2	22	88	7	71	45	2	0	52	1.12
368929--369568	181	3.6	181	72	11	505	40	7	9	42	1.66
368954--369667	179	4.0	179	72	10	431	40	7	9	42	1.67
372387--372468	43	1.9	43	85	9	114	36	6	2	54	1.38
372707--372750	25	1.9	23	82	17	56	54	0	2	43	1.12
372702--372761	16	3.6	16	74	12	50	55	0	1	43	1.10
372886--372942	21	2.6	23	78	13	75	50	5	0	43	1.24
373067--373115	26	1.9	25	91	4	80	44	4	0	51	1.20
373045--373115	28	2.5	29	84	4	83	46	4	0	49	1.21
373247--373335	41	2.2	40	80	9	101	51	2	2	43	1.26
373794--373877	36	2.3	36	82	8	100	44	1	3	51	1.26
373909--373940	16	1.9	17	93	6	57	50	0	3	46	1.17
374000--374040	19	2.2	18	86	4	55	58	4	0	36	1.20
374072--374105	17	1.9	18	88	5	52	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374072--374117	21	2.0	21	84	12	56	60	0	0	39	0.97
374125--374157	13	2.4	14	90	10	50	51	0	6	42	1.26
374353--374386	17	2.0	17	94	0	59	44	0	0	55	0.99
374828--374895	35	1.9	35	85	5	93	45	0	5	48	1.26
375254--375316	30	2.1	30	82	5	74	46	3	0	50	1.17
375274--375326	21	2.5	21	77	17	56	43	0	0	56	0.99
375707--375763	19	3.2	18	78	11	55	42	3	0	54	1.17
375694--375746	17	2.8	20	75	16	58	45	1	0	52	1.11
376167--376220	25	2.2	25	86	6	74	35	0	3	61	1.14
376167--376220	13	4.3	12	86	9	72	35	0	3	61	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64