genome.fa.s224.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  36  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5550647--5551743	125	8.6	127	75	8	683	39	11	12	36	1.79
5551437--5551629	62	3.1	60	72	13	167	40	6	11	41	1.66
5556429--5556466	13	2.9	13	88	0	58	23	7	7	60	1.51
5557661--5558372	161	4.4	159	77	6	630	33	9	13	43	1.77
5557697--5558297	321	1.9	322	80	3	719	33	9	13	43	1.77
5563286--5563322	8	4.6	8	87	12	58	37	0	0	62	0.96
5563273--5563322	8	5.9	9	82	15	54	36	0	0	64	0.94
5563273--5563323	24	2.2	24	89	10	79	35	0	0	64	0.94
5563311--5563352	21	2.0	22	95	4	77	52	0	0	47	1.00
5568548--5568618	30	2.4	30	83	4	83	52	4	0	43	1.20
5570079--5570117	19	2.0	20	95	5	71	48	25	0	25	1.51
5570111--5570149	18	2.2	18	90	0	60	38	20	2	38	1.66
5578735--5578990	129	2.0	129	89	1	388	32	8	10	48	1.67
5580590--5580673	44	1.9	44	87	0	123	35	5	11	46	1.65
5585249--5585287	10	3.8	10	82	3	51	66	0	30	2	1.05
5585249--5585286	15	2.4	16	82	4	51	68	0	28	2	1.03
5587241--5587293	23	2.3	23	93	6	90	45	0	0	54	0.99
5587262--5587300	16	2.4	16	82	0	51	46	0	0	53	1.00
5594490--5594547	18	3.6	18	76	21	58	46	0	3	50	1.18
5597297--5597341	10	4.4	10	83	5	54	53	2	0	44	1.13
5597630--5597680	20	2.5	20	84	6	68	52	3	0	43	1.19
5597630--5597697	20	3.4	18	80	13	64	51	4	1	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5597630--5597697	19	3.4	19	81	6	73	51	4	1	42	1.31
5597747--5597794	18	2.8	16	82	14	60	29	2	6	62	1.31
5597825--5597860	11	3.3	11	96	0	63	69	0	0	30	0.89
5597820--5597860	11	3.5	12	87	12	59	65	0	0	34	0.93
5597910--5597957	15	3.1	15	81	6	60	22	2	6	68	1.23
5598095--5598227	10	13.3	9	70	23	72	42	3	5	48	1.43
5600498--5600537	20	2.0	20	85	9	55	57	5	0	37	1.21
5601844--5601882	9	4.3	9	96	0	60	15	0	28	56	1.40
5601877--5601914	12	3.2	12	85	7	51	15	0	15	68	1.22
5605538--5605568	3	10.3	3	100	0	62	64	0	0	35	0.94
5607442--5607525	29	2.8	29	79	13	91	19	1	9	70	1.21
5609847--5609895	3	16.3	3	86	0	71	61	2	2	34	1.19
5616632--5616658	11	2.5	11	100	0	54	85	0	7	7	0.75
5616632--5616698	10	6.7	10	70	17	50	79	1	7	11	1.00
5617664--5617755	36	2.6	36	77	8	98	19	18	11	50	1.78
5617823--5617920	37	2.7	35	78	9	117	26	20	4	48	1.67
5622169--5622246	40	2.0	40	92	0	129	53	15	7	23	1.67
5624405--5624451	13	3.6	13	85	0	58	82	0	17	0	0.66
5624405--5624448	22	2.0	21	91	4	70	84	0	15	0	0.63
5624411--5624451	6	7.0	6	83	10	50	82	0	17	0	0.66
5624819--5625071	126	2.0	126	98	0	488	38	11	9	40	1.75
5630499--5630540	21	2.0	21	90	0	66	35	7	19	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5639949--5639998	21	2.4	21	100	0	100	14	18	16	52	1.76
5649868--5649917	20	2.5	20	96	0	91	42	24	8	26	1.82
5651275--5651308	17	1.9	18	88	5	52	52	2	0	44	1.16
5651240--5651355	61	1.9	61	85	0	160	50	4	9	35	1.54
5651259--5651531	59	4.4	62	76	12	244	47	5	11	36	1.62
5651251--5651480	128	1.8	127	86	5	340	47	4	11	36	1.61
5651518--5651550	16	2.1	16	100	0	66	33	12	6	48	1.65
5655424--5655470	13	3.5	13	88	5	58	76	0	14	8	1.01
5655424--5655471	14	3.4	14	85	5	62	77	0	14	8	0.99
5655424--5655474	16	3.4	15	81	13	61	76	0	15	7	1.00
5655433--5655504	17	4.4	17	79	8	78	77	0	19	2	0.88
5655427--5655504	30	2.5	31	83	8	95	75	0	19	5	0.98
5655433--5655504	33	2.3	32	85	7	94	77	0	19	2	0.88
5655460--5655531	33	2.1	35	82	10	87	69	0	26	4	1.06
5656579--5656991	46	9.0	46	88	2	515	40	10	12	36	1.76
5657014--5657065	20	2.6	20	90	0	77	42	13	13	30	1.83
5656971--5657163	78	2.4	79	92	2	325	38	12	16	32	1.86
5657092--5657144	21	2.6	20	82	5	61	39	9	13	37	1.77
5657209--5657447	114	2.1	114	92	0	397	33	13	16	36	1.87
5657755--5657859	45	2.4	45	85	3	133	28	12	12	46	1.78
5658040--5658092	12	4.7	11	82	11	63	18	3	1	75	1.05
5658050--5658092	6	7.3	6	84	5	61	18	2	2	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5658040--5658092	23	2.3	23	93	3	90	18	3	1	75	1.05
5658040--5658106	23	3.0	23	84	6	66	17	5	4	71	1.23
5659682--5659987	60	5.1	57	73	13	211	50	5	9	35	1.58
5659680--5659987	125	2.5	119	79	12	322	50	5	9	35	1.58
5668119--5668161	12	3.6	12	80	0	50	67	20	2	9	1.30
5668149--5668195	17	2.5	20	80	20	73	55	29	0	14	1.40
5668154--5668196	17	2.5	17	100	0	86	53	30	0	16	1.43
5675303--5675337	18	1.9	18	88	0	52	40	8	2	48	1.49
5680763--5680808	22	2.1	22	87	0	65	73	10	2	13	1.17
5686309--5686380	26	2.6	28	77	18	80	51	2	2	43	1.30
5686349--5686394	20	2.3	20	85	10	67	52	2	2	43	1.25
5686529--5686565	17	2.1	19	90	10	60	16	13	0	70	1.17
5687654--5687689	2	18.0	2	88	0	54	2	0	44	52	1.15
5691156--5691225	30	2.3	32	80	7	83	55	1	0	42	1.08
5692671--5692705	14	2.6	14	91	8	56	74	5	0	20	1.02
5699425--5699477	20	2.7	20	100	0	106	49	0	0	50	1.00
5699990--5700091	52	1.9	53	90	5	163	62	1	4	30	1.27
5702202--5702260	11	5.2	11	78	8	55	45	0	1	52	1.10
5702372--5702437	21	3.1	22	72	25	61	66	1	0	31	1.01
5702342--5702441	34	3.1	32	75	13	87	64	1	0	35	1.01
5702388--5702448	23	2.7	23	80	9	56	70	1	0	27	0.97
5702448--5702508	26	2.2	30	85	11	85	50	8	0	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5703931--5704006	29	2.5	30	85	4	100	51	2	1	44	1.23
5704120--5704181	29	2.1	30	84	6	81	48	6	0	45	1.28
5704120--5704195	31	2.5	29	82	6	80	47	7	0	44	1.32
5705754--5705792	17	2.3	16	86	8	51	12	5	7	74	1.20
5714383--5714421	2	19.5	2	100	0	78	48	0	0	51	1.00
5717317--5717362	2	23.0	2	86	0	65	52	4	0	43	1.21
5717322--5717362	16	2.6	16	100	0	82	51	4	0	43	1.23
5717780--5717844	29	2.3	29	81	7	71	58	3	0	38	1.14
5726681--5726720	21	2.0	20	85	5	53	47	0	5	47	1.24
5727071--5727108	2	19.0	2	94	0	67	50	2	0	47	1.15
5733326--5733357	9	3.4	9	95	4	55	9	0	0	90	0.45
5733325--5733357	10	3.4	10	91	8	59	9	0	0	90	0.44
5733326--5733365	19	2.1	19	85	0	53	12	5	0	82	0.82
5733491--5733577	25	3.4	25	67	9	68	63	11	1	24	1.35
5737623--5737659	11	3.5	11	82	17	51	83	0	13	2	0.74
5737622--5737677	29	2.0	27	89	6	85	80	1	16	1	0.88
5747198--5747290	48	1.9	48	91	4	152	51	4	1	43	1.28
5747820--5747865	22	2.1	22	100	0	92	30	17	19	32	1.95
5750503--5750547	17	2.8	16	83	9	56	13	4	6	75	1.15
5750532--5750737	110	1.9	110	92	0	349	46	2	5	45	1.39
5753082--5753137	25	2.2	25	78	15	62	58	0	5	35	1.21
5755090--5755147	16	3.6	16	74	9	55	43	13	8	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5757232--5757257	2	13.0	2	100	0	52	50	0	0	50	1.00
5757257--5757294	2	19.0	2	91	0	58	44	2	52	0	1.14
5762398--5762495	48	2.0	48	94	0	169	50	5	6	38	1.50
5764880--5764919	21	2.0	19	85	9	53	52	5	5	37	1.45
5767666--5767703	13	3.0	13	80	3	51	52	0	2	44	1.14
5768092--5768139	24	2.0	25	87	4	71	31	6	8	54	1.55
5770742--5770808	28	2.4	28	72	7	64	43	2	0	53	1.16
5770914--5770998	33	2.7	31	73	12	75	51	4	3	40	1.40
5771543--5771572	14	2.1	14	100	0	60	46	0	0	53	1.00
5772387--5772455	27	2.7	23	80	13	57	36	1	1	60	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64