genome.fa.s224.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  56  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8986288--8986325	16	2.4	16	79	16	51	84	7	2	5	0.86
8986336--8986390	23	2.4	23	82	14	62	76	5	1	16	1.06
8986333--8986389	28	2.0	28	83	6	71	77	5	1	15	1.03
8987164--8987206	22	2.0	22	81	9	52	74	2	18	4	1.10
8987333--8987366	17	2.1	17	88	5	52	32	20	26	20	1.97
8987409--8987466	3	19.3	3	100	0	116	67	0	0	32	0.91
8987200--8987649	246	1.8	244	92	0	765	33	18	18	29	1.95
8987959--8988444	117	4.2	117	89	0	686	37	11	24	25	1.90
8987857--8988444	234	2.5	231	84	4	741	36	12	25	25	1.91
8987864--8988475	117	5.2	117	83	3	572	37	12	24	25	1.91
8987858--8988517	234	2.8	234	81	4	647	37	13	24	25	1.91
8999429--8999473	5	9.4	5	77	18	51	75	4	0	20	0.97
8999387--8999488	18	6.2	17	68	20	58	76	2	5	14	1.09
8999430--8999490	28	2.1	27	82	8	68	80	3	3	13	0.96
8999457--8999497	18	2.3	18	86	0	55	85	0	7	7	0.75
8999858--8999889	11	2.9	11	90	0	55	71	12	0	15	1.14
9002250--9002295	12	3.8	12	85	2	56	36	0	4	58	1.18
9002421--9002491	32	2.3	30	85	4	88	50	4	0	45	1.21
9004177--9004239	15	4.3	15	65	15	51	49	0	1	49	1.10
9004193--9004248	28	2.0	28	85	3	76	44	1	3	50	1.29
9004393--9004444	24	2.2	24	85	0	68	38	7	0	53	1.30
9011322--9011400	29	2.7	29	84	2	86	56	2	5	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9012507--9012539	2	16.5	2	100	0	66	48	0	0	51	1.00
9012972--9013008	17	2.1	18	90	5	58	70	0	2	27	1.01
9023311--9023345	2	17.5	2	87	0	52	54	0	0	45	0.99
9038350--9038398	13	3.5	13	77	22	55	42	0	2	55	1.11
9039875--9039981	54	2.0	54	92	0	178	35	14	20	29	1.92
9040357--9040411	18	3.0	18	74	12	58	50	0	0	49	1.00
9041047--9041077	8	3.9	8	100	0	62	35	12	25	25	1.92
9041301--9041354	25	2.2	25	86	6	74	29	5	7	57	1.49
9045210--9045241	2	16.0	2	100	0	64	50	0	0	50	1.00
9045702--9045766	20	3.4	19	71	23	55	33	0	0	66	0.92
9045718--9045773	12	4.5	12	75	16	51	33	0	0	66	0.92
9057803--9057849	22	2.2	21	84	3	58	21	4	6	68	1.30
9062117--9062154	3	12.7	3	83	10	51	34	31	31	2	1.72
9066100--9066164	28	2.3	27	79	7	67	56	0	1	41	1.08
9066989--9067046	30	1.9	30	92	0	98	58	1	3	36	1.25
9075929--9075967	2	20.0	2	89	5	53	46	0	53	0	1.00
9080954--9080992	14	2.7	14	88	4	51	33	0	0	66	0.92
9084641--9084679	21	1.9	21	94	5	71	71	0	0	28	0.86
9098093--9098146	27	2.0	27	100	0	108	40	0	40	18	1.51
9104267--9104332	31	2.2	30	86	2	87	53	1	3	42	1.25
9112924--9112998	29	2.6	28	85	8	89	42	4	0	53	1.19
9119103--9119146	13	3.5	13	75	6	54	56	9	18	15	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9119097--9119147	25	2.0	25	96	0	93	52	7	17	21	1.69
9120436--9120475	19	2.2	17	91	8	62	75	5	0	20	0.99
9123056--9123086	2	16.0	2	93	6	55	48	0	0	51	1.00
9123301--9123350	22	2.3	22	79	6	57	28	16	6	50	1.68
9126174--9126207	2	17.0	2	87	0	50	47	2	0	50	1.16
9126576--9126620	22	2.0	22	95	0	81	26	15	4	53	1.61
9127193--9127218	2	13.0	2	100	0	52	50	0	0	50	1.00
9128709--9128751	13	3.3	13	76	0	50	18	4	2	74	1.10
9131365--9131407	15	2.8	15	82	13	52	55	0	4	39	1.20
9131436--9131527	27	3.2	27	64	24	71	44	5	13	36	1.66
9131333--9131599	59	4.6	58	88	3	342	47	4	9	38	1.57
9131387--9131600	59	3.7	59	93	1	344	46	5	10	37	1.61
9131333--9131603	58	4.6	59	86	3	318	46	5	9	39	1.58
9131333--9131600	117	2.3	117	85	5	346	47	4	9	38	1.57
9135230--9135292	31	2.0	31	93	0	108	34	12	15	36	1.86
9139403--9139445	17	2.5	17	84	3	59	37	9	20	32	1.85
9139541--9139565	12	2.1	12	100	0	50	60	8	8	24	1.52
9139962--9140004	12	3.8	12	78	9	54	62	0	0	37	0.95
9139962--9140008	16	3.1	16	78	9	53	63	0	0	36	0.94
9140339--9140364	2	13.0	2	100	0	52	50	0	0	50	1.00
9143089--9143146	27	2.2	26	81	12	64	55	0	0	44	0.99
9144833--9144885	20	2.8	20	83	10	69	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9157261--9157303	9	4.7	9	80	13	52	32	0	2	65	1.06
9157791--9157841	17	3.3	15	84	15	61	54	0	0	45	0.99
9157801--9157842	21	2.0	22	85	4	59	57	0	0	42	0.99
9157791--9157864	33	2.2	33	80	4	78	55	1	0	43	1.08
9158129--9158153	2	12.5	2	100	0	50	52	0	0	48	1.00
9173263--9173323	24	2.6	23	76	19	63	36	8	0	55	1.30
9173307--9173343	18	2.1	18	89	0	56	29	13	0	56	1.37
9180218--9180283	28	2.4	27	78	12	73	53	4	1	40	1.31
9181075--9181114	12	3.6	12	77	16	50	30	0	0	70	0.88
9182069--9182093	1	25.0	1	100	0	50	100	0	0	0	0.00
9192862--9192933	30	2.4	30	83	4	83	44	0	0	55	0.99
9192869--9192918	16	3.0	16	85	5	55	38	0	0	62	0.96
9192870--9192921	14	3.6	14	75	10	50	42	0	0	57	0.98
9192906--9192955	20	2.5	20	93	6	84	52	0	0	48	1.00
9193458--9193548	25	3.6	25	78	0	110	38	8	31	20	1.84
9193864--9193968	52	2.0	52	81	7	124	46	8	17	27	1.77
9194205--9194270	6	10.7	6	72	18	55	34	0	0	65	0.93
9194199--9194269	12	5.7	12	85	14	83	33	0	0	66	0.92
9194206--9194271	22	3.0	22	77	4	71	36	0	0	63	0.95
9194229--9194267	16	2.4	16	82	0	51	35	0	0	64	0.94
9197612--9197643	2	16.0	2	100	0	64	50	0	0	50	1.00
9197774--9197803	7	4.3	7	91	0	51	53	0	3	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9198359--9198428	23	3.0	23	74	12	70	55	4	1	38	1.28
9199355--9199426	20	3.8	19	74	16	69	51	1	0	47	1.09
9205119--9205144	2	13.0	2	100	0	52	50	0	0	50	1.00
9219164--9219212	15	3.6	14	74	23	50	44	12	2	40	1.53
9219164--9219223	26	2.3	26	88	0	93	46	10	3	40	1.54
9223940--9224002	2	31.5	2	86	0	90	46	6	0	47	1.28
9223941--9224002	22	2.8	22	97	0	115	46	6	0	46	1.28
9227694--9227740	19	2.5	19	96	0	85	27	31	0	40	1.57
9230394--9230442	24	2.0	24	84	4	62	46	0	4	48	1.20
9231667--9231755	43	2.1	43	91	4	144	22	6	11	59	1.55
9236030--9236096	13	5.6	11	76	15	53	61	0	2	35	1.12
9236030--9236105	24	3.1	24	84	7	82	61	0	3	34	1.14
9236058--9236132	24	3.0	24	83	11	91	61	0	2	36	1.10
9236060--9236153	45	2.0	50	81	12	117	59	0	2	38	1.09
9236400--9236506	41	2.7	40	72	16	96	42	0	2	55	1.14
9240175--9240202	2	14.0	2	100	0	56	50	0	0	50	1.00
9243681--9243708	1	28.0	1	100	0	56	0	0	0	100	0.00
9248992--9249030	6	6.5	6	87	0	60	0	15	35	48	1.45
9260100--9260132	16	2.1	16	100	0	66	51	12	18	18	1.76
9260671--9260703	14	2.4	14	100	0	66	12	0	6	81	0.85
9261207--9261292	39	2.2	39	78	15	88	52	2	5	39	1.38
9272783--9272818	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9273173--9273225	11	4.9	10	76	17	52	56	0	5	37	1.23
9274367--9274468	53	1.9	53	100	0	204	8	22	22	46	1.79
9282405--9282430	13	2.0	13	100	0	52	30	0	0	69	0.89
9284702--9285027	119	2.8	119	82	3	372	16	15	11	57	1.65
9286399--9286457	30	2.0	30	83	6	75	30	16	16	35	1.92
9291058--9291259	103	1.9	104	85	6	275	35	12	5	45	1.67
9294514--9294574	25	2.4	25	100	0	122	29	19	11	39	1.87
9296246--9296407	60	2.7	60	90	0	252	20	42	14	22	1.88
9297906--9297934	6	4.8	6	100	0	58	34	17	13	34	1.89
9299748--9299772	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64