genome.fa.s224.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  57  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9306473--9306597	62	2.0	62	93	0	214	25	20	20	32	1.97
9308356--9308396	15	2.6	16	84	7	57	63	0	2	34	1.08
9308360--9308459	50	2.0	50	92	0	164	50	0	2	48	1.12
9308823--9308857	16	2.1	17	89	5	54	68	0	0	31	0.90
9317360--9317394	17	1.9	18	88	11	54	34	0	5	60	1.21
9318868--9318922	26	2.2	26	83	9	69	52	0	5	41	1.24
9320843--9320879	19	1.9	19	88	0	56	64	0	0	35	0.94
9321029--9321060	16	2.0	16	93	0	55	18	12	34	34	1.89
9327502--9327843	138	2.5	138	88	2	494	33	19	11	35	1.88
9327690--9328009	164	1.9	165	91	1	516	35	20	10	34	1.86
9327854--9328145	138	2.1	136	88	3	426	34	21	10	33	1.87
9327553--9328188	302	2.1	302	93	1	1078	35	20	10	33	1.86
9328116--9328259	28	5.1	28	73	15	116	40	27	4	28	1.75
9328103--9328274	86	2.0	86	96	0	317	40	25	4	29	1.75
9328229--9328568	138	2.5	138	83	3	418	33	19	10	36	1.86
9329981--9330024	5	8.6	5	85	14	63	77	0	0	22	0.77
9329981--9330023	17	2.8	16	89	10	63	76	0	0	23	0.78
9330401--9330444	19	2.2	20	88	4	63	56	0	0	43	0.99
9331325--9331390	31	2.1	32	82	2	80	53	1	1	43	1.19
9335095--9335129	2	17.5	2	100	0	70	48	0	0	51	1.00
9336558--9336590	15	2.2	15	100	0	66	24	15	30	30	1.95
9337505--9337553	15	3.3	15	85	5	64	63	4	0	32	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9343848--9343872	2	12.5	2	100	0	50	52	0	48	0	1.00
9346556--9346649	33	2.9	32	81	10	95	51	3	1	44	1.24
9346512--9346609	37	2.7	36	70	14	85	54	1	0	44	1.07
9346568--9346662	33	2.6	36	77	17	97	51	3	1	44	1.24
9352158--9352192	17	2.1	16	89	5	52	31	0	0	68	0.90
9353824--9353883	15	3.9	15	75	12	68	36	5	8	50	1.55
9354987--9355016	2	15.0	2	100	0	60	0	50	0	50	1.00
9358452--9358578	18	7.4	18	70	15	74	47	3	3	45	1.37
9358452--9358578	34	3.8	33	79	6	130	47	3	3	45	1.37
9358606--9358703	34	2.9	33	84	4	124	43	4	5	46	1.44
9366397--9366479	41	2.0	41	97	0	157	44	12	13	30	1.80
9369294--9369337	21	2.2	20	83	4	52	43	2	2	52	1.26
9371163--9371197	15	2.2	16	90	5	54	51	2	0	45	1.16
9371228--9371276	22	2.2	22	81	0	62	46	6	0	46	1.27
9372757--9372795	21	1.9	20	84	5	51	58	0	5	35	1.20
9373312--9373430	62	1.9	62	86	5	168	52	14	6	26	1.66
9374588--9374642	22	2.4	24	82	11	71	61	0	0	38	0.96
9378685--9378924	119	2.1	117	92	3	394	42	1	5	50	1.35
9378891--9378933	14	3.0	15	83	10	54	48	2	0	48	1.14
9378882--9378966	43	2.0	43	81	9	102	44	3	1	50	1.26
9379804--9379835	13	2.5	13	94	0	55	46	0	9	43	1.35
9384561--9384585	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9384072--9387159	518	6.1	509	85	6	3642	30	18	13	38	1.89
9389409--9389458	26	2.0	25	88	4	73	22	16	26	36	1.94
9390983--9391021	15	2.6	15	87	0	51	38	0	0	61	0.96
9391088--9391128	18	2.2	19	91	4	66	68	2	0	29	1.03
9397130--9397187	15	3.9	15	75	20	68	37	5	8	48	1.56
9397371--9397418	24	2.0	24	84	8	62	45	6	6	41	1.54
9401751--9401877	18	7.4	18	71	15	74	48	3	3	45	1.34
9401751--9401877	34	3.8	33	81	6	139	48	3	3	45	1.34
9401905--9402002	34	2.9	34	83	4	92	43	5	5	45	1.48
9412595--9412638	21	2.2	20	83	4	52	43	2	2	52	1.26
9416633--9416753	63	1.9	63	91	0	197	52	14	6	26	1.65
9421835--9421909	31	2.4	31	84	10	91	38	6	5	49	1.52
9421926--9422161	118	2.0	120	93	4	406	41	1	5	52	1.34
9422131--9422173	14	3.0	15	83	10	54	48	2	0	48	1.14
9422122--9422206	43	2.0	43	81	9	102	45	2	1	50	1.22
9422138--9422215	29	2.8	28	76	11	79	47	2	1	48	1.23
9423499--9423524	13	2.0	13	100	0	52	53	0	0	46	1.00
9427286--9430365	512	6.1	505	85	7	3508	30	18	13	38	1.89
9432988--9433027	11	3.6	11	83	12	55	37	0	0	62	0.95
9433247--9433286	18	2.2	19	86	4	55	52	0	0	47	1.00
9433627--9433680	28	2.0	27	85	3	72	33	14	9	42	1.78
9433705--9433743	15	2.6	15	87	0	51	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9433810--9433850	18	2.2	19	91	4	66	68	2	0	29	1.03
9436970--9437038	25	2.8	26	70	16	65	23	0	5	71	1.08
9437845--9437878	17	2.0	17	88	0	50	35	0	0	64	0.94
9447729--9447776	15	3.3	14	82	8	51	58	4	8	29	1.46
9447729--9447776	14	3.3	15	85	8	55	58	4	8	29	1.46
9448153--9448184	14	2.3	14	94	0	55	65	0	3	31	1.08
9448148--9448190	13	3.2	13	83	6	50	51	0	2	46	1.13
9448284--9448353	26	2.7	25	86	6	104	51	0	1	47	1.09
9448283--9448356	9	8.6	9	72	19	68	51	0	1	47	1.09
9448284--9448356	25	2.9	26	91	4	114	50	0	1	47	1.09
9448309--9448394	35	2.4	35	81	9	86	53	0	1	45	1.07
9448320--9448446	67	1.9	66	81	14	152	51	1	1	45	1.20
9448324--9448445	34	3.7	32	69	15	79	51	1	1	45	1.20
9448441--9448594	18	9.0	18	70	14	62	46	0	1	52	1.08
9448459--9448598	31	4.3	33	70	18	80	45	0	1	52	1.09
9448440--9448569	13	9.9	13	70	24	80	43	0	1	55	1.09
9448480--9448572	22	4.1	22	74	16	84	40	0	1	58	1.05
9448428--9448556	44	3.1	44	74	19	125	41	0	1	57	1.08
9448612--9448645	15	2.3	15	90	10	52	38	2	0	58	1.13
9449634--9449701	20	3.3	21	76	15	61	29	1	2	66	1.15
9454004--9454045	21	2.0	21	100	0	84	23	19	14	42	1.87
9457326--9457398	33	2.2	32	88	7	110	36	0	12	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9457518--9457566	26	1.9	25	91	4	80	53	0	0	46	1.00
9457520--9457577	26	2.4	25	85	8	75	53	1	0	44	1.10
9457558--9457599	21	2.0	22	85	4	59	71	2	2	23	1.10
9457796--9457853	26	2.4	25	83	13	68	53	3	0	43	1.17
9457834--9457875	21	2.0	22	85	4	59	71	2	2	23	1.10
9457366--9458165	276	2.9	277	97	0	1505	44	3	5	45	1.44
9458070--9458119	27	1.9	27	88	8	77	52	0	2	46	1.12
9459220--9459253	14	2.3	15	90	5	52	32	29	23	14	1.94
9471563--9471605	22	2.0	22	90	0	68	67	4	0	27	1.10
9471678--9471719	20	2.2	19	83	8	50	19	23	0	57	1.41
9480483--9480523	18	2.2	19	91	4	66	34	0	0	65	0.93
9484766--9484795	6	5.0	6	95	0	51	0	53	0	46	1.00
9485233--9485262	3	10.0	3	92	0	51	36	0	30	33	1.58
9485781--9485868	29	3.0	30	85	11	103	44	12	0	43	1.42
9485794--9485871	29	2.6	31	86	10	108	47	12	0	39	1.42
9485872--9485936	28	2.3	29	82	12	82	67	4	0	27	1.10
9486571--9486612	22	1.9	22	85	0	57	59	0	2	38	1.10
9486641--9486687	17	2.9	16	78	12	51	44	0	0	55	0.99
9488456--9488492	19	1.9	19	94	0	65	40	2	0	56	1.13
9488459--9488497	9	4.2	9	80	6	51	35	2	0	61	1.10
9488488--9488527	15	2.6	16	84	7	57	45	0	0	55	0.99
9488581--9488635	28	2.0	28	82	7	67	41	5	0	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9488612--9488657	17	2.7	17	80	12	51	50	2	4	43	1.34
9488949--9489004	26	2.3	25	76	11	62	66	0	0	33	0.92
9488959--9489026	27	2.5	28	74	11	70	64	0	0	35	0.94
9488952--9489021	11	6.4	11	75	6	54	65	0	0	34	0.93
9492162--9492187	2	13.0	2	100	0	52	50	0	0	50	1.00
9495891--9495916	2	13.0	2	100	0	52	50	0	0	50	1.00
9499501--9499546	21	2.1	22	88	4	67	41	0	0	58	0.98
9500013--9500062	21	2.4	22	80	16	61	66	0	0	34	0.92
9500012--9500057	20	2.3	20	85	7	58	67	0	0	32	0.91
9509693--9509726	16	2.1	16	94	0	59	29	5	5	58	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64