genome.fa.s224.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  6  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376289--376341	22	2.4	22	81	6	54	56	0	0	43	0.99
378306--378342	18	2.0	19	94	5	67	62	0	0	37	0.96
378536--378588	16	3.2	16	76	15	54	56	3	0	39	1.17
378541--378600	21	2.8	20	78	11	66	56	5	0	38	1.21
379905--380411	176	2.8	181	77	6	419	39	11	8	41	1.70
380543--381197	181	3.6	180	80	4	737	41	10	7	40	1.67
381052--381529	261	1.8	261	82	4	580	41	8	6	43	1.60
381675--383934	181	12.6	181	77	7	1800	40	10	8	40	1.70
381689--383728	538	3.8	534	78	7	1646	40	9	8	40	1.70
381675--383934	357	6.3	354	75	9	1623	40	10	8	40	1.70
381689--383933	537	4.2	527	77	8	1749	40	10	8	40	1.70
384036--384502	181	2.6	181	80	5	514	42	7	7	42	1.61
384173--384812	324	2.0	324	82	4	783	42	8	8	40	1.67
385268--385500	120	1.9	120	85	5	319	35	11	7	45	1.69
385104--385657	301	1.8	300	81	2	682	38	10	8	41	1.71
386037--386116	11	6.8	12	68	22	53	51	0	0	48	1.00
387874--388270	181	2.2	181	79	6	419	44	7	8	40	1.61
387968--388344	181	2.1	181	82	3	445	44	6	8	41	1.60
388446--388869	182	2.4	182	78	6	400	38	6	9	44	1.63
388446--388902	183	2.5	182	78	5	448	38	7	9	43	1.66
389264--389326	31	2.0	31	96	0	117	41	7	6	44	1.59
389280--389322	21	2.0	21	82	8	52	41	6	6	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389798--390058	133	2.0	133	83	4	339	37	11	7	43	1.69
389940--391711	181	9.9	180	74	8	976	41	9	8	40	1.69
389944--391739	357	5.0	360	74	10	1001	41	9	8	40	1.69
389937--391438	538	2.8	541	80	5	1427	40	10	8	40	1.70
389943--391525	181	8.8	181	75	6	1137	41	9	8	40	1.68
389916--391706	718	2.5	717	76	9	1538	41	9	8	40	1.68
391362--391687	166	2.0	168	81	2	388	39	9	7	42	1.67
391606--391860	136	1.9	137	84	4	345	43	10	8	36	1.70
391741--395102	539	6.2	532	76	7	2163	41	9	8	40	1.68
391742--394071	720	3.2	715	74	9	1596	41	10	8	40	1.69
391741--398735	361	19.5	353	72	10	3242	41	9	8	39	1.68
391741--395095	181	18.6	178	72	8	1508	41	9	8	40	1.68
394796--394835	21	1.9	21	85	10	55	37	5	7	50	1.53
394679--395659	512	1.9	516	80	5	1128	43	8	8	39	1.66
395628--395660	18	1.9	17	88	11	50	36	9	6	48	1.60
395195--418506	181	130.5	177	69	12	6213	41	10	8	39	1.70
398904--399098	96	2.0	96	88	0	291	47	4	9	37	1.57
399148--399386	122	2.0	121	82	9	299	42	7	8	40	1.65
399922--399982	19	3.4	19	75	13	65	36	11	4	47	1.61
400289--400321	18	1.9	17	88	11	50	39	12	6	42	1.67
399270--400563	357	3.6	354	77	7	1145	40	11	8	40	1.70
400448--400683	120	2.0	119	83	2	294	33	12	9	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401065--401106	22	1.9	22	90	0	66	64	2	0	33	1.07
400137--401098	477	2.0	476	78	5	976	40	10	8	40	1.69
401617--402621	528	1.9	527	80	6	1194	40	10	8	40	1.69
400579--423205	362	62.9	357	70	12	8372	41	10	8	40	1.69
403840--404166	166	2.0	166	84	3	435	42	8	7	41	1.63
404047--418506	181	80.5	181	72	10	7324	41	10	8	39	1.70
406471--407746	178	7.1	179	77	10	1060	40	9	9	41	1.69
410794--410827	17	2.0	17	100	0	68	52	11	11	23	1.70
408489--423205	361	40.8	358	72	10	7470	41	9	8	40	1.68
413868--414198	169	2.0	169	79	4	364	43	10	7	38	1.68
414670--414988	170	1.9	171	82	2	408	42	9	10	38	1.70
417293--417620	173	1.9	169	81	4	390	42	10	8	39	1.70
418887--423205	182	24.1	180	73	8	2541	41	9	8	40	1.69
420020--423191	180	17.6	179	74	9	1476	41	9	8	40	1.68
422717--422749	18	1.9	17	88	11	50	33	6	12	48	1.65
423258--425334	181	11.6	178	71	10	904	42	9	8	40	1.66
424471--425334	180	4.8	176	76	8	629	42	8	7	41	1.65
424559--425266	361	2.0	360	80	7	821	41	8	7	42	1.63
425696--427246	179	8.7	177	74	10	948	41	9	8	40	1.69
425798--430761	356	13.9	354	72	11	1538	41	9	8	40	1.68
425698--431101	181	30.2	181	75	9	3492	41	9	8	40	1.68
426855--426899	24	1.9	23	86	4	63	31	8	8	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426705--427035	171	1.9	171	87	4	481	41	8	8	42	1.64
425659--431101	544	10.1	531	74	10	2673	41	9	8	40	1.68
429547--431101	180	8.6	178	73	9	770	42	9	7	40	1.66
431135--431903	181	4.3	179	77	4	685	42	8	8	40	1.66
431148--431924	360	2.2	358	77	6	775	42	8	8	40	1.65
432153--445880	181	76.3	178	72	10	5925	40	8	9	41	1.67
432037--445869	361	38.5	360	72	10	6346	40	8	9	41	1.67
434076--434108	18	1.9	17	88	11	50	48	3	6	42	1.43
436390--436422	18	1.9	17	88	11	50	48	3	6	42	1.43
440702--441710	355	2.8	354	79	7	1037	41	7	8	42	1.64
441605--441821	111	2.0	111	85	1	292	37	6	8	47	1.59
441711--443989	711	3.2	711	76	8	1629	40	8	9	41	1.68
442993--443291	164	1.8	164	85	2	422	44	6	10	38	1.64
443504--443584	41	2.0	41	87	0	117	43	8	1	46	1.42
443802--445431	715	2.3	713	78	7	1559	40	7	9	41	1.66
441796--445277	895	3.9	899	77	8	2318	40	8	9	41	1.67
445290--445596	165	1.8	166	83	8	408	39	5	11	42	1.65
445989--446663	180	3.8	180	78	6	629	39	9	9	41	1.70
446894--446941	17	2.8	17	78	12	53	41	10	4	43	1.58
446212--447689	509	2.8	509	77	9	1209	39	10	8	40	1.70
446024--447350	688	1.9	689	81	6	1603	40	10	8	41	1.69
446669--448181	181	8.5	181	76	7	1219	41	10	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448209--448276	36	1.9	36	82	14	88	47	4	7	41	1.51
448418--448450	18	1.9	17	88	11	50	48	3	6	42	1.43
448224--451609	181	18.9	179	75	7	2228	39	8	9	42	1.68
449519--449964	180	2.5	180	79	4	454	41	8	7	42	1.63
448224--450964	712	3.8	712	75	8	1582	39	8	9	42	1.68
450365--451575	361	3.4	354	77	7	1088	39	9	10	41	1.71
448232--451603	532	6.3	537	74	9	1615	39	8	9	42	1.68
451607--454396	181	15.6	181	75	7	1841	40	10	8	40	1.70
451785--454373	537	4.8	533	76	9	1679	40	10	8	40	1.70
451607--457549	718	8.2	711	71	11	2210	41	10	8	40	1.69
451607--457549	356	16.4	356	71	12	2581	41	10	8	40	1.69
454602--454662	31	1.9	31	87	9	88	47	11	1	39	1.50
454401--455462	181	5.9	179	75	8	759	42	10	8	38	1.68
453798--454968	614	1.9	601	80	6	1331	42	9	7	40	1.66
455383--455695	156	2.0	157	83	4	391	41	9	9	39	1.70
455538--457549	181	11.2	179	76	7	1441	41	9	8	41	1.67
457564--462004	181	24.6	178	70	11	1932	41	10	8	40	1.69
457593--459710	538	3.9	528	77	8	1542	41	9	8	40	1.69
458915--459604	180	3.8	180	75	8	462	40	10	8	40	1.70
459688--459736	23	2.1	23	96	0	89	26	16	10	46	1.78
460381--460444	31	2.1	31	100	0	128	40	12	12	34	1.81
460596--462024	180	8.0	181	74	9	693	42	10	7	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461292--462002	177	4.0	180	74	10	465	41	9	8	41	1.66
461938--462111	87	2.0	87	87	0	249	48	6	5	39	1.54
462036--462444	184	2.2	183	75	10	393	41	8	7	42	1.63
463028--468557	181	31.1	180	74	8	3058	40	8	9	41	1.68
465442--465748	165	1.8	167	80	5	370	40	7	10	41	1.68
465825--468561	179	15.4	181	75	8	2030	40	8	9	41	1.68
468807--469654	181	4.9	169	75	9	462	42	9	7	40	1.65
469147--469874	181	4.1	180	77	6	636	43	10	7	38	1.68
469857--469899	18	2.4	18	100	0	86	48	18	6	25	1.73
470468--472201	180	9.7	179	74	8	1025	42	10	8	39	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64