genome.fa.s224.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  26  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3912293--3912471	58	3.1	58	89	0	268	29	16	15	38	1.90
3925683--3925755	22	3.4	22	78	10	71	34	6	5	53	1.51
3926099--3926132	17	2.0	17	88	11	52	55	0	0	44	0.99
3926127--3926219	22	4.3	22	78	5	82	36	4	5	53	1.43
3926086--3926200	11	10.5	11	71	2	61	42	3	3	50	1.36
3928948--3928992	19	2.3	20	92	3	74	35	0	2	62	1.08
3939800--3939872	31	2.4	31	92	0	119	28	17	24	28	1.98
3942688--3942843	52	3.0	52	87	2	208	25	26	9	38	1.87
3942868--3942909	11	3.8	11	87	0	57	47	30	2	19	1.62
3942868--3942910	22	2.0	22	90	0	68	46	30	2	20	1.63
3947928--3947986	25	2.3	26	77	8	68	44	0	1	54	1.10
3947977--3948036	23	2.4	25	78	10	61	40	1	3	55	1.27
3948265--3948345	40	2.0	42	80	11	96	41	0	3	54	1.18
3948309--3948357	18	2.7	19	78	9	57	38	0	4	57	1.18
3948455--3948512	22	2.4	26	75	18	63	53	6	1	37	1.38
3948484--3948531	15	3.2	14	85	11	60	45	4	2	47	1.33
3948507--3948577	25	2.8	23	78	16	61	56	0	1	42	1.08
3948538--3948577	17	2.4	18	80	16	50	62	0	0	37	0.95
3948508--3948577	26	2.7	27	78	12	76	57	0	1	41	1.08
3952385--3952542	64	2.5	64	91	3	246	43	10	13	32	1.79
3954115--3954143	2	14.5	2	100	0	58	51	0	0	48	1.00
3962320--3962385	31	2.1	31	83	10	82	46	19	13	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3963590--3963788	22	8.9	22	80	8	213	39	15	7	37	1.75
3963702--3963788	43	2.0	43	88	0	129	40	17	6	35	1.76
3964203--3964338	71	1.9	71	81	3	166	31	21	8	38	1.84
3964953--3965033	37	2.2	37	82	10	94	6	13	1	79	0.99
3964962--3965031	27	2.6	27	78	8	63	7	11	1	80	0.97
3969498--3969527	8	3.8	8	95	0	51	10	6	0	83	0.81
3978974--3979024	20	2.6	20	87	3	68	37	1	3	56	1.29
3979410--3979460	20	2.6	19	85	11	68	27	1	3	66	1.20
3982189--3982231	19	2.3	19	88	8	61	58	2	4	34	1.32
3982323--3982379	27	2.2	25	79	14	62	35	14	5	45	1.67
3982495--3982530	17	2.1	18	89	5	56	33	2	0	63	1.08
3982990--3983065	21	3.6	21	70	19	59	51	2	5	40	1.38
3983549--3983588	20	2.0	20	85	9	55	45	12	10	32	1.75
3990237--3990276	10	4.0	10	93	0	62	55	10	12	22	1.67
3996542--3996742	93	2.1	94	76	9	214	37	7	7	46	1.63
3996812--3996852	20	2.0	20	85	4	55	68	7	4	19	1.32
3997338--3997362	2	12.5	2	100	0	50	52	0	0	48	1.00
3999454--3999514	19	3.3	19	74	4	52	50	14	6	27	1.68
3999724--3999772	23	2.1	23	84	0	62	51	10	8	30	1.65
3999703--3999782	22	3.6	22	76	3	79	47	10	8	33	1.68
3999679--3999879	90	2.2	90	80	3	226	44	12	9	33	1.74
3999687--3999879	45	4.3	45	75	7	158	44	11	9	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3999859--3999935	26	3.0	25	77	5	82	49	10	7	32	1.66
3999884--4000081	46	4.3	46	78	11	176	44	9	9	36	1.69
3999859--4000016	22	6.7	24	69	14	80	46	8	8	36	1.66
3999747--4000016	22	11.7	23	64	14	76	45	9	10	35	1.71
4000095--4000143	24	2.0	24	88	0	71	42	4	6	46	1.47
4000566--4000708	39	3.6	39	83	4	153	34	18	9	37	1.84
4002100--4002133	11	2.9	11	91	8	50	11	11	0	76	1.02
4002100--4002134	18	1.9	18	88	0	52	11	14	0	74	1.08
4007090--4007142	13	4.2	13	82	4	72	20	0	39	39	1.53
4007090--4007142	19	2.8	19	85	0	70	20	0	39	39	1.53
4007092--4007142	6	8.2	6	85	8	57	19	0	39	41	1.52
4010615--4010660	18	2.6	18	85	0	56	8	4	30	56	1.49
4017918--4017991	26	2.9	25	78	9	78	77	1	9	12	1.07
4019808--4019856	18	2.8	17	74	17	55	36	6	16	40	1.73
4019801--4020057	17	14.9	17	69	9	119	36	11	14	38	1.81
4020181--4020310	34	3.8	34	74	5	120	34	18	10	36	1.84
4020232--4020277	17	2.7	18	76	6	51	41	15	10	32	1.82
4020835--4020887	24	2.2	24	86	3	70	66	16	1	15	1.35
4021108--4021153	18	2.6	18	82	6	58	8	4	30	56	1.49
4021895--4021931	14	2.5	15	86	8	58	35	5	8	51	1.55
4023292--4023493	105	1.9	104	94	1	359	37	8	13	40	1.75
4026002--4026175	7	25.0	7	68	14	76	15	1	35	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4026008--4026071	20	3.3	18	76	12	56	14	1	34	50	1.52
4026027--4026173	59	2.6	54	77	17	140	15	1	34	48	1.54
4027107--4027142	12	3.2	12	77	22	51	66	0	8	25	1.19
4035373--4035403	15	2.1	15	93	0	53	61	3	0	35	1.12
4035695--4035806	16	7.2	16	67	19	60	19	3	3	73	1.13
4035717--4035838	6	23.2	5	73	17	56	18	8	1	71	1.19
4035755--4035805	15	3.6	14	84	10	59	21	3	0	74	0.98
4035717--4035807	19	5.2	18	70	18	59	19	4	2	73	1.11
4036818--4036948	58	2.2	60	80	8	144	37	5	9	48	1.58
4038364--4038392	12	2.5	12	94	5	51	51	3	0	44	1.18
4040890--4040952	19	3.6	18	78	16	60	58	12	3	25	1.49
4040890--4040967	18	4.4	17	82	9	77	57	11	3	26	1.51
4041016--4041053	7	5.4	7	87	9	51	78	0	0	21	0.74
4041020--4041091	12	5.6	12	78	8	54	76	2	4	16	1.06
4042109--4042159	12	4.4	12	76	16	54	72	9	0	17	1.11
4042126--4042159	6	5.8	6	93	3	52	70	8	0	20	1.13
4044319--4044347	8	3.6	8	100	0	58	65	0	0	34	0.93
4044866--4044949	12	6.6	12	77	6	69	19	3	22	54	1.59
4044849--4044921	24	3.0	24	80	4	83	17	6	23	52	1.69
4044847--4044929	24	3.3	25	77	5	78	19	6	22	51	1.68
4044887--4044949	14	4.7	14	84	5	78	20	0	22	57	1.41
4044907--4045102	103	1.9	103	86	2	277	29	6	16	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4045013--4045052	14	2.9	14	88	0	53	22	0	22	55	1.44
4045157--4045210	28	1.9	28	85	7	74	31	1	0	66	1.02
4045172--4045210	14	2.8	13	88	11	60	25	2	0	71	0.98
4045168--4045210	7	6.1	7	80	20	54	27	2	0	69	1.00
4045436--4045494	15	3.9	15	86	0	73	57	10	0	32	1.32
4045444--4045620	3	59.0	3	75	4	133	55	2	5	36	1.36
4050538--4050697	30	5.1	30	67	14	115	45	8	11	35	1.70
4050505--4050697	64	3.0	64	97	0	368	46	7	11	34	1.69
4058925--4058992	32	2.1	32	86	5	93	13	16	30	39	1.86
4059019--4059142	14	8.4	14	71	19	76	22	4	0	73	1.00
4059097--4059139	6	7.2	6	89	10	70	16	0	0	83	0.64
4059067--4059139	20	3.8	20	83	5	73	21	4	0	73	0.99
4059100--4059138	11	3.4	11	92	7	60	15	0	0	84	0.62
4059094--4059142	19	2.5	20	87	9	75	18	0	0	81	0.69
4059449--4059485	11	3.4	11	84	0	56	2	0	13	83	0.74
4059696--4059781	35	2.5	35	79	7	102	53	17	15	13	1.73
4062343--4062512	84	2.0	84	100	0	340	38	17	11	32	1.86
4063551--4063870	157	2.0	157	90	1	498	43	14	9	33	1.77
4070382--4071128	170	4.4	169	85	3	959	37	15	11	35	1.83
4070256--4071119	334	2.5	339	81	5	971	37	15	10	35	1.83
4071319--4071437	62	1.9	64	81	10	147	34	14	7	43	1.73
4072335--4072578	80	3.1	80	86	5	332	23	8	25	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4082263--4082442	94	1.9	95	88	3	274	40	14	3	42	1.62
4082648--4082689	16	2.5	17	77	14	52	40	40	0	19	1.51
4086779--4086825	24	2.0	24	84	16	62	55	0	2	42	1.12
4090106--4090162	30	1.9	30	85	0	78	49	15	1	33	1.55
4090260--4090320	32	1.9	32	89	0	95	39	8	18	34	1.80
4090591--4090618	14	2.0	14	100	0	56	42	0	7	50	1.30
4090803--4091063	18	14.6	18	72	19	192	55	1	1	42	1.14
4090808--4090992	11	16.9	11	70	23	90	56	0	1	42	1.10
4090826--4091064	29	8.9	28	68	23	133	55	1	1	42	1.16
4090803--4091022	70	3.0	70	78	13	248	56	0	0	41	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64