genome.fa.s224.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  33  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5154037--5154087	18	2.8	19	85	8	79	33	0	3	62	1.13
5153999--5154218	20	11.2	20	73	9	143	37	1	5	55	1.34
5154144--5154219	39	1.9	39	89	5	118	36	2	3	56	1.32
5155622--5155651	2	15.0	2	92	0	51	50	0	3	46	1.18
5155836--5155888	16	3.4	16	73	5	63	54	0	3	41	1.18
5155824--5155897	31	2.4	31	100	0	148	54	0	2	43	1.14
5159921--5159950	14	2.1	14	93	0	51	53	3	0	43	1.17
5163433--5163750	158	2.0	158	100	0	636	36	24	11	27	1.90
5163966--5164027	29	2.1	29	96	0	115	38	6	8	46	1.59
5169706--5169740	3	11.7	3	93	0	61	31	2	0	65	1.07
5169745--5169796	12	4.3	12	90	4	70	1	17	0	80	0.80
5169758--5169792	4	8.8	4	100	0	70	0	22	0	77	0.78
5169915--5169959	23	2.0	23	81	0	54	44	11	13	31	1.78
5170033--5170064	16	2.0	16	93	0	55	68	9	3	18	1.30
5170776--5170812	19	2.0	19	89	5	58	21	0	0	78	0.75
5170779--5170815	17	2.1	17	90	5	56	21	0	0	78	0.75
5170934--5171281	192	1.8	192	83	8	474	42	6	14	36	1.72
5172074--5172113	21	2.0	21	85	5	55	77	2	7	12	1.07
5182265--5182289	11	2.3	11	100	0	50	92	0	8	0	0.40
5183108--5183426	53	6.4	50	77	11	287	26	10	20	42	1.83
5183101--5183327	102	2.2	101	82	6	289	28	9	20	41	1.83
5183101--5183442	49	6.9	49	76	10	212	27	10	20	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5183420--5183467	25	1.9	25	86	0	69	25	18	22	33	1.97
5183441--5183750	48	6.5	48	82	4	367	27	10	20	40	1.86
5183320--5183562	120	2.0	121	84	4	312	26	11	21	39	1.88
5183211--5183693	265	1.8	267	84	4	668	27	10	20	41	1.85
5183946--5183999	9	6.2	8	81	10	54	12	5	0	81	0.85
5183947--5183997	26	2.0	26	84	7	68	13	5	0	80	0.89
5183946--5184000	18	3.1	17	86	5	65	12	5	0	81	0.84
5183952--5184001	18	2.9	17	85	8	66	10	6	0	84	0.79
5183956--5184009	18	3.1	18	84	7	58	9	11	0	79	0.93
5184134--5184175	22	1.9	22	85	0	57	38	14	16	30	1.89
5185974--5186023	18	2.8	18	81	9	57	48	0	2	50	1.12
5186718--5186830	27	4.0	28	80	15	117	53	0	0	44	1.12
5186736--5186830	30	3.3	27	84	13	120	55	1	1	42	1.13
5186800--5186840	19	2.1	20	86	13	59	68	2	0	29	1.03
5186799--5186885	25	3.4	25	68	17	63	62	4	1	32	1.23
5189150--5189186	11	3.2	12	85	14	51	37	0	0	62	0.96
5190879--5190921	17	2.7	15	76	16	50	74	0	4	20	1.00
5192348--5192400	26	2.0	26	85	0	70	26	1	5	66	1.25
5192875--5192905	16	1.9	16	93	0	53	22	6	3	67	1.28
5202590--5202645	20	2.8	20	81	5	69	80	3	10	5	1.00
5203726--5203776	5	10.0	5	81	12	50	82	11	3	1	0.89
5203729--5203803	36	2.1	36	85	5	98	82	9	5	2	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5203729--5203796	21	3.1	22	76	12	59	82	10	4	2	0.92
5203999--5204077	31	2.6	31	80	9	83	44	8	18	27	1.80
5205489--5205771	142	2.0	142	97	0	532	39	12	15	32	1.85
5207904--5207933	8	3.9	8	91	8	53	90	0	10	0	0.47
5207905--5207933	15	1.9	15	100	0	58	89	0	10	0	0.48
5208713--5209662	48	19.7	48	85	6	1139	29	11	24	34	1.91
5208713--5209662	96	9.8	97	88	3	1307	29	11	24	34	1.91
5209829--5209879	5	10.0	5	81	12	50	82	11	3	1	0.89
5209837--5209900	8	8.0	8	71	13	51	82	7	6	3	0.92
5209842--5209894	23	2.3	23	83	6	63	83	7	5	3	0.92
5210098--5210167	33	2.2	31	82	10	79	44	11	17	27	1.82
5211367--5211424	16	3.6	16	79	9	64	46	27	6	18	1.75
5211553--5211835	142	2.0	142	96	0	523	38	12	15	32	1.85
5212509--5212580	35	2.1	35	81	5	83	22	19	11	47	1.80
5212761--5212993	102	2.3	102	87	1	326	24	19	9	47	1.78
5212967--5213038	34	2.1	34	82	5	83	16	19	12	51	1.76
5212865--5213117	136	1.9	136	82	1	319	21	18	11	48	1.79
5213157--5213231	34	2.2	34	82	0	96	20	16	10	53	1.72
5213202--5213283	35	2.4	34	79	4	92	21	21	4	51	1.67
5213339--5213491	35	4.5	35	71	11	93	21	18	9	50	1.75
5213329--5213560	34	6.8	34	67	11	118	21	18	10	49	1.78
5214989--5215023	17	2.2	16	90	10	54	11	11	0	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5215539--5215563	13	1.9	13	100	0	50	56	24	4	16	1.57
5215569--5215607	13	2.9	13	88	3	51	51	25	2	20	1.60
5217371--5217411	20	2.0	20	95	0	73	34	12	9	43	1.75
5217564--5217622	29	2.1	29	93	3	102	54	8	5	32	1.53
5220072--5220138	30	2.3	29	80	10	73	40	4	1	53	1.30
5222138--5222194	5	11.4	5	88	9	55	0	5	15	78	0.91
5222163--5222198	3	13.0	3	83	16	51	0	0	27	72	0.85
5228416--5228488	28	2.7	27	77	8	76	47	1	0	50	1.09
5228523--5228609	28	3.0	29	76	8	88	48	8	0	43	1.32
5229666--5229699	16	2.1	16	100	0	68	29	17	41	11	1.85
5235107--5235147	20	2.1	20	86	4	57	43	0	0	56	0.99
5235995--5236073	40	2.0	40	97	0	149	31	29	11	27	1.91
5237802--5237846	18	2.5	18	88	0	72	40	0	0	60	0.97
5243576--5243617	16	2.6	16	82	10	50	16	21	21	40	1.91
5243636--5243664	3	9.7	3	100	0	58	31	0	0	68	0.89
5244520--5244567	8	5.6	8	76	13	51	10	0	6	83	0.81
5244531--5244567	14	2.8	13	84	8	56	10	0	8	81	0.89
5244519--5244603	13	6.6	12	70	15	55	10	2	7	80	1.00
5255393--5255417	13	1.9	13	100	0	50	72	0	20	8	1.10
5255768--5256228	236	2.0	235	85	2	638	18	20	16	44	1.86
5255767--5256249	118	4.1	118	78	2	434	18	21	16	43	1.87
5257402--5257442	19	2.1	20	86	13	59	14	4	2	78	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5258160--5258227	29	2.4	29	82	7	77	50	7	0	42	1.30
5262142--5262185	18	2.5	17	82	13	54	13	2	9	75	1.14
5273642--5274058	40	10.4	38	73	11	262	26	11	18	43	1.84
5273648--5274027	80	4.7	79	83	6	433	26	12	18	42	1.85
5274249--5274284	12	2.9	12	87	4	54	38	0	2	58	1.13
5275095--5275168	10	6.8	11	75	17	57	17	1	8	72	1.15
5275382--5275424	16	2.6	17	75	10	54	76	0	4	18	0.95
5280123--5280154	15	2.1	16	94	5	57	50	6	15	28	1.68
5290223--5290261	18	2.2	18	90	0	60	43	41	7	7	1.62
5292162--5292261	50	2.0	50	98	0	191	39	16	17	28	1.90
5308039--5308101	26	2.4	26	97	0	117	19	19	30	31	1.96
5308310--5308377	28	2.4	28	77	0	82	36	20	20	22	1.95
5308797--5308936	35	4.0	35	74	7	122	42	12	27	17	1.85
5308828--5309119	71	4.1	70	77	3	260	45	12	24	17	1.83
5308811--5309115	36	8.6	36	68	5	129	44	13	24	17	1.84
5309237--5309317	34	2.3	35	83	6	103	46	11	19	22	1.81
5309362--5309436	34	2.2	33	81	9	80	53	8	21	17	1.69
5312281--5312351	3	25.0	3	76	11	60	23	1	1	73	1.00
5312273--5312356	27	3.2	25	78	15	66	22	1	1	75	0.95
5312289--5312356	18	3.8	18	80	16	88	20	1	0	77	0.84
5313104--5313147	13	3.4	13	83	0	61	27	0	2	70	0.99
5313208--5313261	26	2.1	26	83	13	67	40	1	9	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5322204--5322267	33	1.9	33	83	0	83	67	4	4	23	1.29
5323954--5323985	15	2.1	15	94	0	55	21	0	21	56	1.43
5323959--5323993	15	2.3	15	95	0	61	20	0	25	54	1.45
5323968--5324015	22	2.2	22	96	0	87	14	0	31	54	1.41
5325314--5325412	52	1.9	52	85	0	135	20	14	33	32	1.92
5325314--5325426	52	2.2	52	82	3	129	18	14	35	31	1.91
5325994--5326060	20	3.2	20	74	18	57	55	0	1	43	1.09
5326005--5326061	20	2.7	21	81	13	64	59	0	0	40	0.97
5326005--5326062	19	2.8	20	77	20	57	60	0	0	39	0.97
5329537--5329619	43	1.9	44	90	2	132	53	13	7	26	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64