genome.fa.s224.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  34  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5329686--5329953	3	94.0	3	79	12	190	33	2	5	57	1.37
5329731--5329888	26	5.8	26	77	8	97	34	3	4	56	1.37
5335622--5335931	156	2.0	155	86	4	428	43	12	22	20	1.86
5337958--5338006	20	2.5	20	96	0	89	20	16	20	42	1.89
5342350--5342530	3	61.0	3	70	14	99	32	3	5	58	1.39
5343371--5343443	13	5.8	12	75	12	58	19	2	2	75	1.05
5343371--5343422	27	1.9	27	88	0	77	17	1	3	76	1.02
5343367--5343406	19	2.1	19	86	9	55	20	0	2	77	0.88
5344673--5345175	58	8.6	58	79	11	483	37	15	6	40	1.73
5345202--5345284	27	2.9	28	79	16	75	77	2	7	13	1.08
5345233--5345284	8	6.1	8	79	20	61	82	1	3	11	0.88
5345203--5345288	11	7.7	11	72	17	54	77	2	5	13	1.04
5345321--5345358	4	9.5	4	94	0	67	76	2	0	21	0.91
5345616--5345645	15	1.9	16	93	6	53	0	43	0	56	0.99
5345866--5345907	13	3.2	13	82	0	57	61	14	2	21	1.43
5346209--5346269	22	3.0	21	81	15	74	68	4	3	22	1.23
5346232--5346271	11	3.5	12	75	25	50	62	5	5	27	1.37
5346177--5346260	32	2.7	31	78	15	84	70	2	2	25	1.11
5346186--5346271	22	4.1	20	81	15	68	67	3	3	25	1.22
5346392--5346426	3	12.3	3	88	11	56	71	0	0	28	0.86
5346374--5346426	9	6.2	8	81	16	54	71	0	1	26	0.96
5346625--5346961	83	4.1	83	87	1	426	37	21	16	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5346625--5346961	41	8.1	41	87	1	422	37	21	16	25	1.93
5347963--5348031	23	3.1	21	84	15	86	10	7	0	82	0.84
5358368--5358760	58	6.7	59	80	8	430	35	14	6	42	1.72
5358368--5358750	117	3.3	115	87	6	540	36	14	7	41	1.73
5358778--5358873	5	18.6	5	70	22	58	79	2	5	13	1.00
5358778--5358867	13	7.1	12	74	19	76	80	2	4	13	0.97
5358778--5358866	18	4.7	18	69	20	56	79	2	4	13	0.97
5358814--5358856	22	2.0	22	81	9	52	83	2	4	9	0.87
5358802--5358874	34	2.2	33	85	5	92	78	1	8	12	1.03
5359789--5359833	12	3.9	12	80	11	58	68	6	0	24	1.13
5359872--5360003	3	42.3	3	73	13	56	65	1	4	28	1.21
5360193--5360390	44	4.5	43	74	8	184	47	16	9	26	1.77
5360193--5360390	88	2.2	88	78	1	218	47	16	9	26	1.77
5361240--5361288	22	2.2	22	96	0	89	34	22	12	30	1.91
5361237--5361363	22	5.8	22	72	9	73	33	17	17	31	1.93
5361329--5361452	65	1.9	65	83	9	164	29	11	22	37	1.89
5361284--5361534	22	11.5	22	68	3	85	31	13	20	33	1.92
5362980--5363027	22	2.2	23	85	11	73	4	14	0	81	0.84
5362986--5363027	22	1.9	22	95	0	75	2	11	0	85	0.68
5362986--5363026	10	4.0	10	85	14	57	2	9	0	87	0.62
5368015--5368053	21	1.9	20	84	5	51	20	7	5	66	1.36
5369010--5369055	24	2.0	23	82	4	56	43	26	8	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5372158--5372745	158	3.7	159	79	7	419	34	6	19	39	1.77
5372355--5372767	158	2.6	158	82	4	449	33	5	20	40	1.76
5373242--5373287	21	2.2	21	88	0	65	28	0	17	54	1.43
5381257--5381328	35	2.0	36	86	7	103	23	6	6	62	1.45
5381765--5381823	26	2.3	25	79	2	64	64	5	1	28	1.24
5381862--5381915	24	2.3	23	84	12	65	64	0	5	29	1.16
5381883--5381918	18	2.0	18	94	0	63	63	0	2	33	1.08
5382302--5382339	17	2.2	17	90	0	58	36	0	2	60	1.11
5382376--5382438	18	3.7	17	70	16	58	30	0	7	61	1.24
5382455--5382495	18	2.3	18	86	0	64	29	0	0	70	0.87
5382491--5382531	20	2.0	20	85	0	55	31	0	4	63	1.15
5382469--5382529	31	1.9	33	87	9	92	34	0	3	62	1.12
5382957--5383011	26	2.3	25	84	12	71	38	0	0	61	0.96
5382997--5383048	13	4.2	13	80	7	56	32	0	0	67	0.91
5383517--5383559	10	4.3	10	86	13	54	30	0	0	69	0.88
5384292--5384320	2	14.5	2	100	0	58	48	0	0	51	1.00
5385031--5385069	19	2.0	19	85	5	51	7	10	5	76	1.13
5385065--5385106	21	2.0	22	85	4	59	50	2	0	47	1.14
5385155--5385191	12	3.2	12	88	3	58	0	16	0	83	0.64
5385439--5385484	21	2.2	20	84	3	56	43	2	2	52	1.25
5387006--5387410	225	1.8	225	85	4	575	46	3	11	38	1.59
5388127--5388153	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5389887--5389956	29	2.4	30	79	11	83	11	11	1	75	1.11
5390222--5390266	17	2.6	17	86	13	58	15	0	4	80	0.87
5391433--5391479	20	2.3	20	75	10	51	36	4	2	57	1.30
5393387--5393523	67	2.0	67	87	0	193	51	10	13	24	1.72
5393857--5393902	16	2.8	16	83	3	56	76	0	17	6	1.00
5395255--5395353	37	2.6	38	84	6	130	43	14	14	28	1.84
5395267--5395407	37	3.7	36	75	9	129	41	11	14	33	1.81
5395298--5395471	77	2.3	77	78	10	180	39	9	16	34	1.81
5395816--5395996	24	8.0	23	74	11	124	33	6	15	44	1.73
5395645--5396004	21	16.2	21	67	15	97	34	6	14	44	1.71
5395611--5396026	45	9.4	46	72	11	237	35	6	13	44	1.70
5395644--5395978	87	3.7	90	76	10	219	35	6	13	44	1.70
5396029--5396085	27	2.1	27	87	6	80	38	5	14	42	1.68
5395644--5396095	136	3.4	137	76	9	303	35	6	13	44	1.70
5396222--5396316	18	5.3	18	76	20	67	28	9	12	49	1.72
5396287--5396325	18	2.2	18	90	0	60	28	15	7	48	1.72
5401565--5401613	16	2.9	18	79	14	59	55	12	6	26	1.60
5401712--5401757	18	2.6	18	96	0	83	52	13	4	30	1.59
5401788--5401828	3	14.0	3	94	5	75	65	0	0	34	0.93
5401727--5401920	94	2.0	96	88	3	284	57	6	4	31	1.43
5401883--5401948	3	22.7	3	86	6	73	60	1	0	37	1.06
5401884--5401943	23	2.8	21	87	7	68	58	1	0	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5401883--5401947	26	2.5	27	85	7	89	60	1	0	38	1.07
5401961--5401999	14	2.8	13	85	11	51	76	5	2	15	1.06
5401966--5402012	14	3.4	15	83	13	57	80	6	0	12	0.88
5402895--5402945	21	2.4	22	83	3	59	66	3	3	25	1.26
5403497--5403533	18	2.1	18	89	0	56	32	18	16	32	1.93
5403615--5403714	52	1.9	52	87	4	148	47	10	9	34	1.69
5403680--5403760	41	2.0	41	82	4	101	48	13	8	29	1.72
5403723--5403768	17	2.7	17	79	0	56	45	17	8	28	1.78
5403863--5403931	29	2.3	29	85	7	86	40	15	11	31	1.84
5403998--5404064	22	3.0	23	72	14	68	49	10	10	29	1.70
5405155--5405194	17	2.2	19	86	8	57	7	10	0	82	0.84
5409971--5410018	18	2.5	20	83	10	64	50	8	4	37	1.52
5410585--5410609	11	2.3	11	100	0	50	36	40	8	16	1.77
5411254--5411288	16	2.3	15	90	5	52	68	2	0	28	1.04
5420955--5420979	2	12.5	2	100	0	50	52	48	0	0	1.00
5424843--5424875	15	2.1	16	88	5	50	33	9	6	51	1.58
5431598--5432009	50	8.3	50	70	11	238	44	14	9	31	1.77
5431640--5431816	98	1.8	98	82	4	232	44	16	9	30	1.78
5431997--5432101	49	2.2	49	81	13	128	44	12	8	34	1.73
5432772--5432819	24	2.1	22	88	7	69	50	25	8	16	1.73
5439440--5439475	19	1.9	19	88	5	56	25	2	0	72	0.98
5440357--5440386	14	2.1	14	93	0	51	3	0	13	83	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5441760--5441792	9	3.8	9	84	8	50	78	3	0	18	0.87
5442366--5442401	16	2.3	16	90	4	56	63	5	30	0	1.17
5444147--5444346	64	3.2	63	72	9	183	38	11	14	36	1.82
5444433--5444504	36	2.1	36	89	5	112	33	12	20	33	1.90
5447752--5447810	30	2.0	29	87	9	84	49	25	3	22	1.65
5449037--5449071	18	1.9	18	88	0	52	45	0	5	48	1.26
5450559--5450601	21	2.0	21	86	8	61	48	0	18	32	1.48
5451397--5451455	31	1.9	31	89	0	91	49	13	10	27	1.74
5452231--5452259	2	14.5	2	100	0	58	51	0	0	48	1.00
5457767--5457886	31	3.8	31	77	11	127	38	5	5	51	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64