genome.fa.s224.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  47  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7412506--7412577	27	2.5	28	82	8	83	50	0	0	50	1.00
7413385--7413435	24	2.1	24	82	10	59	31	1	3	62	1.24
7413429--7413495	18	3.5	18	70	21	55	43	7	2	46	1.47
7413432--7413555	40	3.1	40	73	8	117	39	8	5	45	1.59
7413326--7413649	154	2.1	150	81	7	361	37	7	6	48	1.59
7413585--7413663	41	2.0	40	82	9	99	35	10	5	49	1.59
7413631--7413682	25	2.2	24	82	6	61	36	5	7	50	1.55
7413858--7413913	27	2.0	27	82	10	67	48	1	0	50	1.11
7418614--7418645	2	16.0	2	93	0	55	0	46	0	53	1.00
7420130--7420154	3	8.3	3	100	0	50	32	0	0	68	0.90
7422139--7422185	25	2.0	23	83	8	58	63	0	0	36	0.94
7424068--7424126	30	2.0	30	89	0	91	47	11	10	30	1.73
7424636--7424674	20	2.0	19	85	5	51	38	10	10	41	1.73
7426437--7426477	20	2.2	18	86	8	55	4	9	0	85	0.73
7427419--7427457	18	2.0	21	85	14	57	35	0	2	61	1.10
7429543--7429572	15	2.1	14	93	6	51	73	10	0	16	1.09
7432493--7432536	19	2.3	19	84	7	54	72	6	20	0	1.07
7433756--7433853	34	2.9	35	80	6	103	35	11	12	40	1.78
7433794--7433862	34	2.0	34	88	0	102	37	14	13	34	1.85
7434205--7434478	140	2.0	141	85	3	374	24	9	20	45	1.80
7434379--7434694	99	3.2	98	76	9	309	23	11	22	42	1.86
7434622--7434736	42	2.7	42	83	2	133	22	12	22	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7434538--7434835	141	2.1	141	87	0	425	23	12	23	41	1.87
7434478--7435421	240	3.9	238	74	10	821	23	13	22	40	1.89
7434680--7435027	99	3.5	98	83	5	432	22	12	23	40	1.89
7434221--7435173	339	2.8	339	87	1	1320	23	12	21	42	1.87
7434874--7435288	141	2.9	140	85	1	526	23	13	22	40	1.90
7435102--7435216	42	2.7	43	83	2	153	25	12	20	42	1.86
7435144--7435412	99	2.7	99	83	5	330	23	13	22	40	1.89
7435568--7436081	48	10.7	48	80	8	462	28	11	19	40	1.86
7435616--7436081	97	4.8	97	79	7	470	28	11	19	40	1.87
7435826--7436122	144	2.1	144	83	3	373	28	11	20	39	1.87
7436237--7436263	10	2.7	10	100	0	54	0	7	0	92	0.38
7439194--7439248	9	5.9	9	80	16	58	3	45	0	50	1.19
7439199--7439245	15	3.2	15	84	3	69	2	46	0	51	1.13
7450800--7450829	2	15.0	2	92	0	51	53	0	46	0	1.00
7451311--7451363	25	2.1	25	83	13	65	60	7	11	20	1.55
7452686--7452733	24	2.0	25	84	12	64	64	6	18	10	1.45
7454778--7454811	14	2.4	14	100	0	68	44	0	0	55	0.99
7454907--7455194	59	4.9	58	72	12	162	34	11	5	48	1.64
7455198--7455236	16	2.3	17	86	8	53	35	7	0	56	1.28
7455934--7455966	15	2.1	16	88	5	50	75	6	6	12	1.16
7455949--7456000	21	2.4	21	84	9	61	69	1	7	21	1.24
7457526--7457612	33	2.6	33	98	0	165	31	14	28	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7458550--7458581	2	16.0	2	100	0	64	50	0	0	50	1.00
7461193--7461255	27	2.4	27	83	2	83	38	1	57	3	1.24
7468534--7468587	27	2.1	27	82	6	67	29	3	3	62	1.29
7468542--7468612	30	2.5	27	86	6	88	36	5	2	54	1.38
7474694--7474726	1	33.0	1	93	0	57	96	0	3	0	0.20
7476109--7476147	20	1.9	21	89	5	62	25	2	2	69	1.14
7477809--7477834	13	2.0	13	100	0	52	46	0	0	53	1.00
7482076--7482145	34	2.1	34	83	5	88	42	1	0	55	1.08
7482111--7482169	25	2.3	26	72	13	61	45	1	0	52	1.10
7483619--7483660	17	2.4	18	84	11	61	30	0	0	69	0.89
7485922--7485956	2	17.5	2	93	0	61	51	0	2	45	1.16
7488640--7488765	65	1.9	65	88	0	189	35	13	15	34	1.87
7489049--7489116	36	1.9	36	90	3	111	33	13	14	38	1.85
7493945--7493983	13	3.2	12	86	13	53	89	2	7	0	0.56
7494439--7494479	21	1.9	22	85	5	57	70	0	14	14	1.16
7494472--7494527	25	2.3	25	81	9	71	75	0	14	10	1.06
7494450--7494527	25	3.2	24	75	15	70	74	0	14	11	1.08
7496211--7496302	37	2.6	36	88	8	127	32	10	9	46	1.72
7496303--7496421	41	2.9	41	78	2	141	27	18	14	39	1.89
7496304--7496453	41	3.7	41	78	0	138	28	17	14	40	1.88
7497636--7497787	21	6.9	21	70	17	103	32	3	9	53	1.50
7497636--7497774	47	3.0	47	85	5	167	33	2	9	54	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7497756--7497818	32	2.0	32	96	0	117	30	6	7	55	1.54
7497822--7497885	31	2.1	31	93	0	110	28	6	12	53	1.62
7497713--7498157	115	3.8	118	75	17	356	29	5	10	54	1.57
7497895--7497933	20	2.0	20	84	0	51	30	7	10	51	1.64
7497903--7498124	56	3.8	56	85	6	241	28	5	10	54	1.57
7497959--7498030	12	6.3	12	67	12	53	29	5	11	54	1.58
7498019--7498175	32	4.8	32	80	6	156	29	6	11	52	1.62
7498103--7498147	21	2.2	20	92	4	72	28	4	8	57	1.48
7498268--7498330	19	3.0	22	84	11	78	30	4	12	52	1.60
7498375--7498434	20	3.1	19	68	17	52	43	5	8	43	1.56
7499075--7499210	43	3.2	43	75	7	134	27	18	16	37	1.92
7499384--7499488	46	2.3	45	91	1	165	33	12	7	46	1.70
7499534--7499576	11	3.8	11	79	14	52	79	13	4	2	1.00
7514831--7514889	31	1.9	31	89	0	91	42	15	13	28	1.85
7518716--7518812	44	2.2	44	87	7	135	42	4	2	51	1.32
7518730--7518813	44	1.9	44	97	0	159	38	4	2	54	1.34
7519840--7519880	21	2.0	21	85	0	55	39	2	41	17	1.62
7527954--7527992	20	2.0	21	85	10	55	66	2	15	15	1.36
7532457--7532500	10	4.5	10	81	16	56	29	0	2	68	1.02
7536690--7536728	2	19.5	2	100	0	78	48	0	0	51	1.00
7539440--7539508	25	2.8	24	78	8	66	27	4	1	66	1.19
7540605--7541051	56	8.1	55	75	11	348	47	5	10	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7545969--7546021	23	2.3	23	90	0	79	56	3	5	33	1.41
7549449--7549503	21	2.7	21	77	2	58	36	0	9	54	1.32
7560293--7560334	21	2.0	22	85	4	59	11	14	0	73	1.09
7561694--7561766	28	2.6	28	73	14	71	42	0	2	54	1.14
7562054--7562082	2	14.5	2	100	0	58	51	0	0	48	1.00
7562278--7562383	30	3.5	30	80	3	115	42	9	0	47	1.42
7568511--7568603	42	2.2	43	84	9	120	44	4	4	47	1.42
7572910--7572963	26	2.2	25	84	12	69	55	0	5	38	1.23
7573088--7573123	16	2.2	17	90	5	56	41	2	0	55	1.14
7579477--7579529	26	2.0	26	96	0	97	28	18	20	32	1.97
7583678--7583736	28	2.1	27	84	9	75	1	55	0	42	1.09
7583872--7583943	35	2.1	35	91	0	117	29	18	12	40	1.87
7588544--7588578	17	2.1	17	89	10	54	80	0	8	11	0.92
7598493--7598527	13	2.6	13	86	4	52	37	8	2	51	1.47
7598518--7598554	19	1.9	19	100	0	74	32	10	16	40	1.83
7600376--7600426	26	1.9	27	88	4	77	62	9	1	25	1.36
7600412--7600456	17	2.6	17	89	3	63	64	0	6	28	1.19
7600368--7600433	26	2.4	27	80	14	73	60	7	3	28	1.39
7600472--7600509	17	2.2	18	85	4	51	63	7	2	26	1.35
7600497--7600556	9	6.9	9	73	7	52	55	0	6	38	1.27
7600497--7600545	17	2.9	17	82	11	64	59	0	4	36	1.17
7600489--7600556	16	4.0	16	81	11	66	55	1	5	36	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7600500--7600563	16	3.6	18	79	12	62	54	0	7	37	1.29
7600905--7600978	17	4.4	18	65	22	52	33	1	1	63	1.11
7602111--7602160	20	2.5	20	83	6	66	76	8	0	16	1.02
7612279--7612323	17	2.6	17	89	3	63	64	0	6	28	1.19
7612242--7612293	26	2.0	26	88	0	77	63	7	1	26	1.32
7612340--7612381	19	2.2	19	87	8	59	64	4	2	28	1.26
7612338--7612380	17	2.4	18	76	7	52	60	4	2	32	1.30
7612338--7612421	9	9.2	9	72	2	60	53	3	5	36	1.43
7612553--7612593	19	2.2	19	86	0	55	34	7	2	56	1.40
7614800--7614867	19	3.5	17	75	20	55	16	1	5	76	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64