genome.fa.s224.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  53  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8378870--8379148	155	1.8	152	85	6	375	46	8	5	39	1.56
8379891--8379947	15	3.6	16	75	9	55	50	3	0	45	1.18
8381191--8381724	200	2.7	195	84	7	723	40	6	5	47	1.54
8396169--8396229	27	2.3	27	91	0	95	57	4	8	29	1.49
8400897--8400935	2	19.5	2	100	0	78	48	0	0	51	1.00
8402647--8402713	7	9.6	7	78	12	57	14	2	4	77	1.05
8403172--8403222	26	1.9	27	92	4	86	49	0	1	49	1.12
8403344--8403382	20	2.0	20	89	0	60	38	2	2	56	1.27
8403324--8403427	44	2.3	46	80	11	126	43	0	2	52	1.22
8403384--8403430	21	2.2	22	81	11	62	42	0	4	53	1.20
8403787--8403826	20	2.1	18	90	9	62	55	0	0	45	0.99
8403722--8404056	167	2.0	163	79	11	360	47	3	6	41	1.48
8408234--8408271	19	2.0	20	84	5	51	39	0	2	57	1.12
8409619--8409705	21	4.2	21	72	7	61	36	6	10	45	1.65
8410084--8410219	22	6.2	22	74	9	89	35	12	8	43	1.74
8410158--8410254	22	4.5	21	87	3	106	31	7	10	50	1.64
8410178--8410263	44	2.0	44	84	9	113	34	5	9	50	1.59
8410299--8410394	22	4.4	22	79	9	97	38	11	6	43	1.66
8410691--8410775	22	3.9	22	80	4	82	38	9	5	45	1.61
8411184--8411280	43	2.2	44	83	5	117	42	8	7	42	1.62
8411077--8411280	22	9.4	21	72	11	76	40	8	8	43	1.65
8411199--8411281	22	3.8	22	78	7	80	43	6	7	43	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8411283--8411698	22	19.3	21	69	12	112	38	9	4	48	1.55
8411283--8411469	41	4.4	41	77	8	142	37	9	3	49	1.52
8411504--8411701	87	2.3	88	76	11	201	37	8	4	48	1.54
8411637--8411763	61	2.1	61	80	2	139	38	9	2	49	1.48
8411538--8412012	44	10.9	43	65	15	134	37	10	3	48	1.54
8411942--8412012	22	3.2	22	81	0	79	35	11	1	52	1.46
8415304--8415353	25	2.0	25	81	14	59	62	2	0	36	1.07
8415958--8416003	21	2.2	21	88	0	65	36	15	6	41	1.73
8415966--8416011	21	2.2	21	84	0	56	41	13	8	36	1.75
8416097--8416144	21	2.3	20	80	13	53	35	6	6	52	1.52
8416461--8416944	44	11.0	44	69	7	203	37	8	7	47	1.62
8416464--8416941	22	21.8	22	70	7	175	36	7	7	47	1.62
8416857--8416962	22	4.7	23	75	13	80	38	7	5	48	1.55
8417418--8417542	22	5.7	22	74	7	92	38	6	11	44	1.66
8417472--8417632	44	3.7	44	72	11	123	37	6	9	47	1.61
8417575--8417652	22	3.5	22	82	0	84	42	3	5	48	1.43
8417723--8417762	19	2.1	19	85	0	53	37	15	2	45	1.59
8417840--8418025	43	4.3	43	77	6	153	38	8	5	48	1.56
8417721--8418035	22	14.6	22	69	11	150	35	9	5	49	1.58
8418077--8418132	22	2.5	22	79	0	67	37	8	7	46	1.63
8418250--8418319	22	3.2	22	73	4	52	40	8	4	47	1.54
8418303--8418362	22	2.8	22	80	7	70	36	8	6	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8421791--8421831	21	1.9	22	90	5	66	46	0	2	51	1.14
8423817--8423842	2	13.0	2	100	0	52	50	0	0	50	1.00
8426881--8426912	2	16.0	2	93	0	55	46	0	3	50	1.17
8431229--8431272	22	2.0	22	95	0	79	47	13	6	31	1.69
8434900--8434953	25	2.2	24	80	3	63	44	14	22	18	1.86
8435017--8435087	37	1.9	37	100	0	142	53	2	16	26	1.57
8442533--8442573	7	6.0	7	88	5	66	0	14	0	85	0.60
8442533--8442573	20	2.0	20	90	4	64	0	14	0	85	0.60
8442534--8442568	17	1.9	19	88	11	56	0	14	0	85	0.59
8443946--8444131	92	2.0	92	95	0	336	22	12	12	52	1.73
8444359--8444497	67	2.1	67	90	0	215	42	11	15	30	1.83
8451548--8451606	26	2.2	27	82	8	68	49	0	1	49	1.11
8467575--8467618	17	2.8	15	76	10	52	77	9	0	13	0.99
8468468--8468494	9	3.0	9	100	0	54	11	0	0	88	0.50
8473036--8473142	41	2.6	41	83	4	126	49	6	8	35	1.59
8484948--8484986	6	6.5	6	96	0	60	69	10	15	5	1.34
8485730--8485767	20	2.0	20	89	5	60	34	0	5	60	1.19
8489442--8489472	3	10.3	3	92	0	53	29	0	38	32	1.57
8489823--8489869	18	2.6	18	86	0	67	38	23	8	29	1.84
8492284--8492323	12	3.4	12	93	3	64	72	0	0	27	0.85
8492283--8492323	18	2.3	19	80	16	52	70	0	0	29	0.87
8492822--8492874	21	2.5	21	85	11	65	77	3	11	7	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8492951--8492989	14	2.8	13	85	14	51	87	2	7	2	0.73
8493871--8493956	40	2.2	40	91	2	138	13	1	60	24	1.41
8494180--8494217	20	2.0	20	89	5	60	34	0	5	60	1.19
8494441--8494489	25	1.9	26	91	4	82	46	2	10	40	1.49
8497866--8497917	27	1.9	27	88	7	79	26	5	36	30	1.80
8498274--8498314	21	2.0	21	95	0	73	26	41	2	29	1.69
8498268--8498392	18	6.9	18	73	13	78	32	33	4	29	1.76
8511399--8511457	29	2.0	29	90	6	93	42	18	6	32	1.77
8517848--8518090	121	2.0	121	91	3	400	25	9	16	48	1.76
8533880--8534100	118	1.9	119	91	3	365	39	10	5	43	1.64
8533875--8534100	60	3.8	59	88	3	330	39	11	6	42	1.65
8534114--8534154	5	7.8	5	94	5	64	82	0	0	17	0.66
8534114--8534169	11	5.1	11	85	12	71	78	0	3	17	0.89
8534114--8534163	16	3.1	16	91	5	75	80	0	2	18	0.82
8534114--8534158	22	2.0	22	100	0	90	82	0	0	17	0.68
8535016--8535187	3	54.3	3	70	22	79	65	1	2	30	1.14
8535029--8535140	14	8.0	14	77	11	104	62	0	4	33	1.15
8535009--8535139	28	4.3	31	74	20	107	61	0	4	33	1.16
8535038--8535182	17	8.3	17	72	19	88	66	1	2	28	1.13
8535010--8535143	45	3.0	43	74	17	121	61	0	4	33	1.16
8535131--8535195	5	12.8	5	80	13	55	75	3	1	20	1.02
8542841--8542886	22	2.1	22	83	0	56	6	2	34	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8547780--8547814	16	2.2	16	90	10	54	68	0	0	31	0.90
8547787--8547854	24	2.8	24	78	12	77	64	1	1	32	1.11
8547792--8547869	24	3.3	22	75	19	61	65	1	1	32	1.09
8547837--8547886	21	2.4	22	83	6	59	62	0	0	38	0.96
8547920--8547948	11	2.5	12	94	5	51	62	0	0	37	0.96
8548315--8548373	24	2.4	25	80	11	68	30	1	1	66	1.12
8548317--8548385	23	3.0	22	80	14	68	31	1	1	65	1.11
8548331--8548385	23	2.4	23	82	14	69	34	0	0	65	0.93
8548400--8548471	28	2.5	28	78	15	85	47	1	0	51	1.09
8548843--8548900	21	2.6	23	83	5	84	34	3	0	62	1.12
8548837--8548910	21	3.4	21	72	9	67	31	4	1	63	1.21
8549618--8549655	20	2.0	20	89	5	60	68	2	5	23	1.23
8551437--8551488	18	2.8	17	75	13	50	53	0	0	46	1.00
8551912--8551958	25	1.9	25	86	4	69	57	2	0	40	1.11
8557162--8557196	18	1.9	18	88	0	52	80	0	5	14	0.89
8557929--8557973	21	2.2	21	88	4	65	22	2	4	71	1.15
8570576--8570618	18	2.5	16	79	17	50	62	4	16	16	1.48
8575886--8575924	2	19.5	2	100	0	78	51	0	0	48	1.00
8577650--8578225	72	8.0	73	78	4	409	39	11	5	42	1.65
8583437--8583598	45	3.7	44	77	7	166	38	9	14	37	1.79
8583752--8583819	35	1.9	35	82	5	84	29	13	14	42	1.84
8583917--8584026	17	6.5	17	72	10	55	36	8	11	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8583988--8584018	16	1.9	16	93	0	53	25	3	19	51	1.62
8585077--8585127	23	2.2	21	78	18	57	11	3	5	78	1.06
8585282--8585336	21	2.7	21	88	5	78	36	5	7	50	1.53
8585454--8585478	13	1.9	13	100	0	50	40	0	0	60	0.97
8588049--8588074	4	6.5	4	100	0	52	50	0	0	50	1.00
8588977--8589011	16	2.1	17	89	5	54	2	8	0	88	0.61
8588972--8589004	13	2.7	13	90	9	52	0	9	0	90	0.44
8589007--8589069	12	5.7	11	78	14	60	17	0	7	74	1.05
8588994--8589056	26	2.4	25	79	7	72	14	1	6	77	1.03
8588997--8589048	21	2.4	22	81	12	63	15	1	7	75	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64