genome.fa.s224.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  24  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3553944--3554236	133	2.2	133	81	3	324	39	17	20	23	1.92
3554074--3554399	110	2.9	110	80	4	352	40	17	20	22	1.92
3554117--3554455	110	3.1	110	80	3	308	39	17	20	22	1.92
3554572--3554687	41	2.8	41	79	7	137	32	14	19	32	1.92
3556383--3556415	16	2.1	16	94	0	57	0	0	9	90	0.44
3564036--3564070	13	2.7	13	86	0	52	0	8	8	82	0.83
3565624--3565657	2	17.0	2	100	0	68	50	0	0	50	1.00
3568548--3568600	12	4.7	12	77	9	58	69	1	0	28	0.99
3569013--3569038	10	2.6	10	100	0	52	46	0	0	53	1.00
3578380--3578412	17	1.9	18	88	11	52	42	6	12	39	1.67
3579216--3579531	51	6.2	50	78	10	286	29	12	21	37	1.90
3579218--3579528	104	3.0	102	83	6	344	27	12	21	37	1.90
3579269--3579517	50	4.7	53	81	5	213	27	14	21	36	1.92
3579777--3579829	19	2.7	19	86	11	72	0	15	0	84	0.61
3579780--3579829	17	3.1	16	86	13	68	0	16	0	84	0.63
3580784--3580837	24	2.2	24	84	12	67	25	0	1	72	0.95
3580783--3580844	21	3.0	21	74	6	63	29	0	1	69	0.98
3581295--3581343	19	2.5	20	78	15	59	71	2	0	26	0.97
3581845--3581871	11	2.5	11	100	0	54	18	0	0	81	0.69
3583618--3583650	14	2.5	13	90	9	50	72	0	0	27	0.85
3583619--3583673	15	3.8	15	81	13	55	72	3	1	21	1.09
3583734--3583823	28	3.2	28	70	14	69	58	5	2	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3584384--3584427	20	2.3	19	92	7	72	31	2	4	61	1.28
3584326--3584559	121	2.0	118	85	5	319	29	3	5	61	1.36
3597253--3597290	14	2.8	14	85	14	53	47	2	0	50	1.15
3597379--3597481	31	3.3	31	76	8	102	41	3	6	47	1.48
3597372--3597489	31	3.8	31	71	11	98	38	3	7	50	1.48
3597747--3597797	24	2.2	24	82	6	61	45	1	7	45	1.44
3597737--3597795	22	2.6	21	76	12	55	49	1	6	42	1.39
3597759--3597803	24	1.9	24	86	4	65	53	2	2	42	1.25
3597811--3597863	16	3.1	17	78	8	54	47	0	7	45	1.31
3600752--3601118	202	1.8	202	82	9	471	35	9	6	47	1.62
3601090--3601129	16	2.5	16	84	8	55	20	2	0	77	0.88
3602063--3602088	4	6.5	4	100	0	52	53	0	0	46	1.00
3611050--3611373	145	2.2	145	81	2	382	42	12	12	32	1.80
3612308--3612550	34	7.2	34	68	10	122	52	13	16	18	1.75
3612749--3612876	35	3.7	35	73	4	114	46	14	19	19	1.83
3612750--3612931	70	2.6	70	81	6	174	47	14	19	18	1.83
3612789--3612931	35	4.1	35	75	7	110	46	15	20	17	1.83
3613167--3613512	105	3.3	103	77	6	315	48	13	18	19	1.80
3613193--3613377	35	5.3	35	66	7	97	50	11	17	20	1.76
3613105--3613520	70	6.0	69	70	8	207	49	13	18	19	1.79
3616418--3616487	1	70.0	1	79	0	59	1	11	0	87	0.62
3616419--3616484	9	6.9	9	80	17	71	1	12	0	86	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3616418--3616487	19	3.4	21	75	18	83	1	11	0	87	0.62
3616418--3616482	24	2.7	24	85	9	87	1	12	0	86	0.65
3616522--3616703	85	2.1	86	90	1	285	25	18	12	43	1.85
3620449--3620510	29	2.1	29	93	3	106	61	3	4	30	1.33
3624339--3624881	145	3.7	145	79	4	506	42	11	13	31	1.81
3637083--3637111	13	2.1	14	93	6	51	58	0	0	41	0.98
3637089--3637154	24	2.6	25	81	13	66	63	1	1	33	1.13
3638730--3638775	17	2.6	17	89	6	65	50	0	2	47	1.13
3639339--3639367	2	14.5	2	100	0	58	51	48	0	0	1.00
3647102--3647170	31	2.3	31	87	2	95	53	1	4	40	1.30
3647112--3647178	15	4.5	15	76	9	57	53	2	4	38	1.36
3648075--3648102	14	2.0	14	100	0	56	35	28	7	28	1.84
3650065--3650126	26	2.3	26	83	10	72	53	12	3	30	1.55
3650281--3650313	16	2.1	16	94	0	57	54	12	9	24	1.66
3663346--3663426	41	2.0	42	87	2	119	49	6	11	33	1.63
3663618--3663679	33	2.0	31	84	9	81	45	8	19	27	1.78
3664095--3664145	21	2.5	20	81	9	57	41	1	19	37	1.63
3664453--3664504	24	2.1	25	82	10	63	46	1	3	48	1.31
3664962--3665011	21	2.2	24	82	10	61	34	0	26	40	1.56
3666138--3666177	20	2.0	20	85	0	53	40	15	12	32	1.84
3667858--3667902	21	2.1	21	87	0	63	24	35	22	17	1.95
3674813--3674882	24	2.9	25	77	8	65	55	21	2	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3675558--3675999	66	6.8	66	75	9	284	41	10	11	36	1.77
3675558--3675999	63	6.8	65	76	7	308	41	10	11	36	1.77
3675621--3676011	63	6.1	64	78	3	356	39	10	12	36	1.79
3675558--3675980	129	3.3	127	78	7	392	40	11	11	35	1.78
3676972--3677021	12	3.9	13	82	10	50	74	0	26	0	0.83
3676988--3677022	12	2.9	12	88	12	54	82	0	17	0	0.66
3678038--3678096	31	2.0	30	86	6	84	49	35	0	15	1.45
3679251--3679305	25	2.2	25	86	0	83	25	12	9	52	1.68
3680092--3680127	11	3.3	11	88	0	54	88	11	0	0	0.50
3680334--3680416	37	2.3	37	83	4	98	33	20	10	34	1.87
3683220--3683266	19	2.6	19	80	16	55	78	0	14	6	0.93
3685923--3686064	70	2.0	69	82	14	168	22	13	15	48	1.80
3685934--3686130	33	5.8	33	65	20	86	23	13	16	46	1.83
3686205--3686266	33	1.9	32	84	12	83	24	11	20	43	1.85
3690564--3690631	7	10.1	7	74	15	54	52	39	0	7	1.29
3690561--3690605	20	2.2	20	92	0	72	60	35	0	4	1.17
3690581--3690647	13	5.2	12	77	14	55	50	37	0	11	1.39
3690584--3690644	19	3.1	19	79	13	70	47	40	0	11	1.40
3690587--3690663	7	12.0	7	70	20	53	45	40	1	12	1.51
3690714--3690759	18	2.6	19	80	13	53	23	10	6	58	1.55
3690741--3690816	35	2.2	34	79	9	82	25	9	6	59	1.52
3691886--3691963	6	13.5	6	81	10	65	30	0	6	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3691886--3691928	11	3.8	11	81	3	50	37	0	2	60	1.10
3692796--3692854	17	3.4	17	77	15	59	27	8	13	50	1.70
3692870--3693160	20	14.0	20	76	12	239	31	5	11	51	1.60
3692870--3693160	41	7.0	41	81	6	311	31	5	11	51	1.60
3693209--3693257	14	3.6	14	76	13	57	26	6	10	57	1.55
3693241--3693284	19	2.3	19	84	4	52	31	4	9	54	1.52
3693386--3693435	20	2.5	20	84	12	75	24	6	14	56	1.60
3693456--3693497	8	5.1	8	88	5	66	35	0	9	54	1.33
3693463--3693566	3	35.7	3	77	12	110	37	0	2	59	1.12
3693572--3693634	26	2.4	25	84	10	74	34	4	14	46	1.66
3696770--3696796	12	2.2	12	100	0	54	70	0	22	7	1.12
3696836--3696906	26	2.7	26	91	0	115	16	8	33	40	1.79
3697152--3697453	101	3.0	101	82	5	353	43	9	9	38	1.70
3699463--3699508	24	2.0	22	87	8	65	73	2	4	19	1.10
3701064--3701110	18	2.7	18	83	3	51	55	14	6	23	1.63
3701227--3701292	17	3.7	16	77	20	60	40	9	16	33	1.80
3701258--3701319	18	3.4	18	69	8	54	38	8	17	35	1.80
3701396--3701476	33	2.4	34	87	2	110	48	11	16	24	1.78
3701394--3701506	34	3.4	34	85	1	129	44	11	16	27	1.82
3701429--3701519	34	2.7	34	86	1	112	41	10	16	30	1.83
3701490--3701537	17	2.9	17	81	3	53	39	12	14	33	1.84
3702749--3702773	10	2.5	10	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3707830--3707869	21	1.9	21	94	0	71	5	5	7	82	0.94
3708916--3708973	25	2.3	25	100	0	116	39	3	3	53	1.35
3711876--3712276	122	3.3	120	82	6	458	37	11	6	43	1.68
3711875--3712276	181	2.2	180	90	4	641	37	11	6	43	1.68
3712288--3712405	4	30.0	4	70	24	56	74	3	3	18	1.10
3712289--3712416	16	7.8	16	73	17	86	75	3	3	17	1.06
3712385--3712426	19	2.2	20	83	12	52	80	2	2	14	0.90
3712381--3712430	23	2.1	24	82	10	59	82	2	2	14	0.86
3712684--3712727	21	2.0	22	91	4	72	0	47	0	52	1.00
3713246--3713300	29	1.9	28	82	10	67	67	0	9	23	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64