genome.fa.s224.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  27  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4090808--4091022	23	8.8	23	73	15	123	55	0	0	42	1.12
4091093--4091190	17	5.7	15	71	20	52	44	2	1	52	1.19
4096107--4096351	129	1.9	126	95	2	445	15	15	12	56	1.67
4098451--4098494	21	2.0	21	91	4	70	20	4	0	75	0.98
4104691--4104870	94	1.9	95	87	1	263	41	13	3	41	1.61
4105076--4105117	16	2.5	17	77	14	52	40	40	0	19	1.51
4109205--4109251	24	2.0	24	84	16	62	55	0	2	42	1.12
4112691--4112751	32	1.9	32	89	0	95	39	8	18	34	1.80
4113022--4113049	14	2.0	14	100	0	56	42	0	7	50	1.30
4113240--4113514	67	4.0	68	77	13	256	57	0	0	41	1.09
4113235--4113513	121	2.3	122	79	16	308	57	0	0	41	1.09
4113479--4113528	23	2.2	23	82	7	57	64	0	2	34	1.05
4113558--4113640	16	5.1	15	71	21	60	45	1	1	51	1.16
4113518--4113658	34	4.2	33	71	16	103	45	1	1	51	1.18
4118561--4118811	130	2.0	127	95	2	448	14	16	12	56	1.68
4128912--4128968	28	2.0	28	100	0	114	35	14	12	38	1.83
4129678--4129727	21	2.4	21	80	6	57	64	0	30	6	1.18
4131921--4132169	128	1.9	130	92	1	421	31	6	10	52	1.60
4133883--4133923	15	2.7	16	77	11	50	39	2	0	58	1.11
4135382--4135425	23	1.9	23	82	17	56	40	9	2	47	1.48
4135465--4135506	22	1.9	22	85	0	57	50	4	2	42	1.36
4135771--4135810	21	1.9	21	85	10	55	22	5	22	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4136468--4136494	11	2.5	11	100	0	54	18	0	7	74	1.05
4139967--4140005	19	2.1	19	95	0	69	33	0	17	48	1.48
4140643--4140734	21	4.3	22	94	4	152	33	9	16	40	1.81
4140643--4140734	43	2.1	43	95	0	166	33	9	16	40	1.81
4141232--4141301	18	3.8	18	73	3	59	37	12	15	34	1.86
4141392--4141645	44	5.8	43	77	9	214	27	14	16	41	1.86
4141441--4141646	88	2.4	88	82	7	251	28	14	16	41	1.86
4142569--4142607	12	3.1	12	88	7	51	61	0	38	0	0.96
4142898--4142933	17	2.1	17	89	0	54	19	0	5	75	1.00
4149908--4149950	16	2.4	18	85	14	63	39	2	2	55	1.25
4150137--4150206	8	8.8	8	80	9	72	2	17	1	78	0.94
4150130--4150208	40	2.0	40	85	4	108	2	16	1	79	0.90
4150514--4150554	12	3.4	12	89	0	64	56	0	0	43	0.99
4150514--4150554	2	20.5	2	84	0	55	56	0	0	43	0.99
4152425--4153215	122	6.5	120	79	6	700	40	10	9	38	1.74
4152578--4153170	245	2.4	245	95	0	1044	39	8	10	40	1.71
4152425--4153222	367	2.2	368	80	6	895	40	10	9	38	1.73
4152563--4153215	122	5.3	120	79	7	706	40	9	10	39	1.71
4157124--4157253	53	2.5	53	81	0	152	38	9	10	41	1.72
4157361--4157402	22	1.9	22	95	0	75	64	2	2	30	1.19
4168528--4168565	18	2.1	19	90	5	60	13	5	5	76	1.13
4168529--4168589	18	3.5	17	80	14	54	16	4	6	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4169793--4169830	17	2.2	17	86	9	51	44	0	0	55	0.99
4170006--4170046	18	2.3	18	86	0	55	7	12	2	78	1.06
4171265--4171360	7	13.7	7	68	20	58	18	3	35	42	1.66
4171267--4171369	13	7.5	13	70	13	55	19	2	33	43	1.66
4171318--4171355	19	2.0	20	89	5	60	21	0	34	44	1.52
4171280--4171381	27	3.6	27	79	10	89	19	1	32	46	1.61
4171313--4171387	34	2.2	33	81	13	82	18	0	34	46	1.49
4171330--4171392	27	2.3	27	86	0	81	17	0	33	49	1.47
4173730--4173774	13	3.5	13	81	0	54	0	2	15	82	0.77
4173731--4173781	26	1.9	27	88	4	77	0	1	15	82	0.76
4174689--4174729	21	1.9	22	95	5	75	36	12	9	41	1.76
4180490--4180550	22	2.9	21	77	13	54	9	8	6	75	1.19
4181733--4181768	16	2.1	18	90	10	58	38	0	2	58	1.13
4181953--4182021	8	8.8	8	84	6	79	2	17	1	78	0.95
4184211--4184750	121	4.4	120	78	9	445	41	11	9	37	1.74
4184344--4184750	122	3.3	120	81	6	435	41	9	10	38	1.71
4187943--4187993	24	2.1	25	82	7	61	45	7	3	43	1.51
4188677--4188806	52	2.5	53	79	2	145	37	9	12	40	1.75
4188914--4188957	22	2.0	22	95	0	79	63	0	2	34	1.07
4198773--4198854	7	11.4	7	77	13	69	2	12	4	80	0.97
4198785--4198855	20	3.8	18	75	21	67	4	9	5	80	1.01
4199175--4199212	18	2.1	19	90	5	60	13	5	5	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4199176--4199236	18	3.5	17	80	14	54	16	4	6	72	1.24
4200622--4200653	17	1.9	16	100	0	55	3	12	3	81	0.93
4201882--4201979	7	14.0	7	70	19	53	20	2	34	42	1.64
4204065--4204114	13	3.8	12	84	12	55	0	4	14	82	0.82
4204064--4204115	14	3.7	14	80	12	54	0	3	13	82	0.80
4204066--4204115	25	1.9	27	88	8	77	0	4	14	82	0.82
4204066--4204108	13	3.4	13	87	3	61	0	4	13	81	0.84
4204169--4204512	49	7.1	48	74	13	167	44	14	13	27	1.82
4204157--4204512	97	3.7	94	74	11	267	44	14	12	27	1.82
4204388--4204510	46	2.6	47	80	5	140	45	16	10	27	1.80
4205013--4205056	21	2.1	21	100	0	88	40	13	9	36	1.76
4206981--4207043	26	2.4	26	76	10	65	11	15	0	73	1.10
4207012--4207057	15	2.8	16	78	21	51	13	10	0	76	1.03
4211833--4211869	13	2.8	13	95	0	65	64	0	0	35	0.94
4213472--4213673	31	6.5	30	78	8	172	27	19	17	35	1.94
4214672--4214928	42	6.2	42	74	8	186	39	11	18	30	1.86
4214695--4214908	83	2.6	83	79	6	209	38	11	19	30	1.87
4216057--4216100	7	6.3	7	79	10	54	0	15	2	81	0.78
4216057--4216100	15	3.1	14	81	9	54	0	15	2	81	0.78
4216059--4216102	22	2.0	22	86	4	61	0	15	2	81	0.78
4216441--4216484	19	2.3	20	77	14	58	4	18	0	77	0.94
4217727--4217763	12	3.2	12	92	3	58	8	13	2	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4217731--4217781	23	2.4	20	87	9	66	9	9	1	78	1.04
4217727--4217765	11	3.5	11	86	6	60	7	15	2	74	1.15
4220563--4220682	37	3.2	37	75	8	118	36	10	16	35	1.84
4220910--4220949	21	1.9	21	84	0	53	5	5	5	85	0.85
4220907--4220950	22	2.0	22	86	8	63	6	4	6	81	0.97
4221722--4221808	25	3.6	25	80	9	108	55	6	10	27	1.59
4221874--4221942	18	3.7	18	75	7	66	17	8	4	69	1.31
4221874--4221942	19	3.6	19	74	5	68	17	8	4	69	1.31
4223039--4223085	7	7.0	7	85	7	62	19	0	36	44	1.51
4223041--4223096	20	2.8	20	94	0	94	17	0	33	48	1.48
4224809--4224865	19	2.9	19	73	2	60	24	5	15	54	1.62
4225102--4225147	20	2.3	20	84	0	56	13	6	0	80	0.89
4226258--4226296	19	2.0	19	90	5	60	33	0	0	66	0.92
4234180--4234390	109	1.9	110	87	0	307	36	17	11	33	1.86
4234706--4234760	27	2.1	27	89	3	85	36	5	5	52	1.48
4240899--4240992	36	2.6	35	81	5	116	26	20	7	45	1.77
4241942--4241975	17	2.0	17	88	0	50	47	2	20	29	1.65
4247173--4247211	17	2.3	18	86	8	55	74	2	10	12	1.17
4248949--4248997	24	2.0	24	100	0	98	38	16	8	36	1.78
4257613--4257655	19	2.3	19	95	0	77	37	25	4	32	1.77
4259053--4259219	4	40.8	4	69	16	85	29	3	1	64	1.20
4259036--4259145	31	3.5	32	79	14	106	28	1	1	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4259103--4259189	32	2.9	29	81	6	95	31	4	2	62	1.28
4260198--4260343	71	2.0	72	90	1	231	43	6	15	34	1.72
4260271--4260529	59	4.4	58	83	4	317	41	5	13	39	1.68
4270949--4270987	9	4.8	8	90	9	53	84	0	5	10	0.76
4270957--4271003	14	3.2	15	82	14	62	87	2	4	6	0.74
4270932--4271000	21	3.0	23	78	12	63	78	2	8	10	1.07
4270949--4271000	9	5.7	9	86	11	52	84	1	5	7	0.84
4270958--4270988	16	1.9	16	93	0	53	87	0	3	9	0.66
4272002--4272290	42	6.8	43	85	4	358	24	15	20	38	1.92
4272002--4272290	82	3.4	85	80	8	329	24	15	20	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64