genome.fa.s224.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  7  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479648--479702	21	2.6	21	97	0	101	25	29	29	16	1.97
480741--482577	181	10.3	181	75	10	1039	41	10	8	39	1.69
480747--484185	362	9.5	359	71	12	1629	41	9	8	39	1.69
481818--484166	181	12.9	179	73	10	1247	41	10	8	39	1.69
481836--482568	180	4.1	179	80	4	579	40	10	8	40	1.69
482542--482596	16	3.2	16	71	14	56	38	12	3	45	1.60
482527--482603	35	2.2	35	97	0	145	37	12	5	44	1.66
482521--482582	19	3.4	19	71	13	67	33	11	9	45	1.73
482536--482611	35	2.2	35	92	0	125	38	13	5	43	1.66
483248--483708	167	2.7	166	78	10	426	40	8	8	41	1.68
482943--483919	530	1.8	529	80	5	1175	40	9	9	40	1.70
484254--485503	349	3.6	340	72	14	780	43	8	7	40	1.64
484202--493038	540	16.3	523	70	14	2091	42	9	8	39	1.68
484202--486176	178	11.1	179	75	12	1207	42	9	8	39	1.67
486365--486702	181	1.9	181	82	1	426	41	9	9	39	1.70
486883--493038	362	17.2	359	75	8	4540	42	10	8	39	1.68
486880--493038	180	34.5	181	75	8	3900	42	10	8	39	1.68
492006--492050	23	2.0	23	86	0	63	62	2	0	35	1.08
493326--494410	179	6.0	180	78	5	971	41	8	9	41	1.67
493869--493901	16	2.0	17	88	5	50	42	3	12	42	1.57
493387--494359	361	2.7	358	78	5	999	40	8	8	42	1.66
494128--494730	314	1.9	315	89	1	942	41	8	9	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495055--495148	49	1.9	49	93	0	161	48	8	11	30	1.69
495104--496120	181	5.7	180	75	8	826	39	9	11	39	1.73
495743--495779	17	2.1	18	85	14	51	37	2	10	48	1.52
496135--496721	181	3.3	178	78	7	620	38	8	9	43	1.68
496135--497020	181	5.0	175	73	12	619	39	7	9	43	1.66
497090--497263	87	2.0	87	90	2	278	41	4	6	47	1.47
496730--497591	448	1.9	450	78	4	938	41	6	8	42	1.62
497199--501217	361	11.2	359	75	8	2685	40	7	9	42	1.67
497481--501213	542	7.0	534	75	9	1743	40	7	9	42	1.67
497177--501217	180	22.6	181	74	7	2251	40	7	9	42	1.67
501531--501716	33	5.7	33	76	6	155	34	14	18	31	1.91
503024--504081	161	6.6	161	82	3	1083	42	14	10	32	1.80
503024--504079	321	3.3	319	81	4	1133	42	14	10	32	1.80
503024--504209	161	7.4	159	81	3	1036	42	14	10	32	1.80
509773--509805	17	1.9	17	88	11	50	36	0	33	30	1.58
510723--511119	178	2.2	179	77	11	400	38	10	9	42	1.71
510713--511614	176	5.1	175	74	11	674	38	8	10	42	1.69
511640--512119	181	2.7	175	72	8	398	41	10	8	38	1.71
512158--514674	181	14.0	179	74	9	1568	40	7	10	41	1.68
512978--514510	716	2.1	721	79	6	1624	40	7	10	41	1.68
514999--517262	180	12.4	179	71	11	542	41	8	8	41	1.66
515662--515741	39	2.1	39	97	0	151	43	6	12	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515670--515751	39	2.1	39	88	2	119	43	7	13	35	1.72
515705--517271	180	8.7	179	78	5	1313	41	8	8	41	1.66
515971--517260	540	2.4	535	81	5	1463	41	8	8	41	1.65
521245--521274	3	9.7	3	92	7	51	63	0	0	36	0.95
521241--521272	10	3.3	10	95	4	57	62	0	0	37	0.95
521937--521983	2	23.5	2	91	0	76	44	4	0	51	1.21
522018--522044	3	9.0	3	100	0	54	33	0	0	66	0.92
531657--531697	22	1.9	21	90	5	64	26	2	7	63	1.33
532921--532945	1	25.0	1	100	0	50	0	0	0	100	0.00
536306--536348	20	2.2	20	91	0	68	4	16	2	76	1.05
536272--536334	30	2.1	30	85	5	83	4	20	0	74	0.99
536864--536946	11	8.2	10	74	12	64	4	12	1	81	0.89
536864--536944	16	5.7	13	79	13	72	4	12	1	81	0.91
537579--537693	56	2.1	56	100	0	230	28	21	3	46	1.68
537680--537734	25	2.2	24	84	6	74	5	20	0	74	1.01
538782--538858	31	2.6	28	82	8	84	3	22	1	72	1.08
538777--538906	22	6.0	21	65	22	63	6	23	0	68	1.19
552182--552206	13	1.9	13	100	0	50	8	16	4	72	1.24
555413--555465	15	3.2	17	76	17	58	64	0	0	35	0.94
555541--555601	32	1.9	32	83	6	79	47	1	0	50	1.10
555609--555672	24	2.7	23	79	9	76	51	0	0	48	1.00
564813--565336	145	3.6	144	82	5	551	34	13	9	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565844--565896	25	2.1	25	82	6	63	52	11	30	5	1.60
570164--570225	31	2.0	31	96	0	115	67	8	6	17	1.37
570173--570225	18	3.2	17	75	25	60	67	9	5	16	1.37
576990--577048	20	3.0	20	94	0	100	18	30	28	22	1.97
577217--577245	3	9.7	3	100	0	58	31	0	0	68	0.89
577871--577917	19	2.5	19	82	0	58	29	29	19	21	1.97
578296--578754	160	2.9	161	93	4	754	28	14	17	39	1.89
584042--584071	15	2.1	14	93	6	51	50	6	36	6	1.55
588986--589065	9	9.2	8	78	17	72	71	0	17	11	1.14
588958--589060	10	11.6	9	77	17	74	74	0	11	12	1.12
588959--589053	17	5.4	17	76	13	77	73	1	11	13	1.15
588986--589065	17	4.6	16	74	21	63	71	0	17	11	1.14
590075--590732	42	16.0	39	90	7	895	22	16	21	39	1.92
590075--590732	83	8.0	79	91	7	910	22	16	21	39	1.92
590740--590877	33	4.2	32	84	9	181	88	7	0	4	0.63
590741--590876	41	3.2	42	89	6	204	88	7	0	4	0.63
590740--590864	1	125.0	1	80	0	133	89	7	0	3	0.57
590980--591038	20	3.0	20	94	0	100	18	30	28	22	1.97
591210--591235	3	8.7	3	100	0	52	30	0	0	69	0.89
592234--592277	15	2.9	15	86	0	52	9	0	4	86	0.70
592234--592260	1	27.0	1	100	0	54	0	0	0	100	0.00
592289--592760	155	3.0	156	91	4	766	29	14	17	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595652--595716	20	3.4	19	75	10	60	16	6	26	50	1.68
595653--595698	20	2.3	20	92	0	74	15	6	28	50	1.69
595649--595727	19	4.1	20	77	9	76	16	6	25	51	1.67
602033--602082	25	2.0	25	96	0	91	50	0	30	20	1.49
603534--603566	15	2.2	15	89	10	50	87	0	12	0	0.53
604835--604881	22	2.1	22	84	7	60	10	12	4	72	1.25
605023--605060	20	1.9	20	89	10	60	23	21	7	47	1.77
609149--609206	30	1.9	30	86	6	82	32	3	12	51	1.56
608715--609875	580	2.0	581	89	1	1763	27	8	14	49	1.72
613404--613435	16	2.0	16	93	0	55	21	6	9	62	1.47
621102--621191	45	2.0	45	88	0	135	25	18	14	41	1.89
626201--626251	9	4.9	10	81	13	59	60	0	1	37	1.08
626201--626238	19	2.0	19	90	10	60	63	0	2	34	1.09
632050--632074	12	2.1	12	100	0	50	16	16	8	60	1.58
634012--634278	140	1.9	141	83	3	351	23	17	16	43	1.87
638703--638849	64	2.3	63	80	5	161	42	8	4	44	1.55
639018--639105	13	6.6	13	69	10	52	75	5	2	17	1.11
639062--639095	10	3.5	10	88	8	52	76	2	0	20	0.92
639065--639110	19	2.4	18	89	7	65	76	6	0	17	1.00
641107--641153	3	15.7	3	86	8	69	29	2	0	68	1.02
642979--643032	26	2.1	25	83	10	65	27	1	12	57	1.46
644146--644201	18	2.9	19	86	7	78	10	1	44	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644203--644280	19	4.1	18	68	15	50	16	5	37	41	1.71
645682--646073	144	2.7	141	74	8	371	41	14	13	31	1.84
645896--646209	144	2.2	144	79	2	319	39	13	14	32	1.84
646340--646386	20	2.3	20	88	0	67	27	6	12	53	1.63
646341--646406	30	2.2	30	83	5	80	27	9	15	48	1.74
646734--646840	42	2.5	42	79	8	119	34	13	21	30	1.91
646767--647319	83	6.7	82	74	6	352	38	13	18	29	1.89
646767--647319	41	13.4	41	74	5	314	38	13	18	29	1.89
646936--647340	124	3.3	123	77	5	388	38	14	18	28	1.90
647567--647615	13	3.7	13	86	10	64	10	10	0	79	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64