genome.fa.s224.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  39  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6124418--6124448	15	2.1	15	100	0	62	12	0	6	80	0.89
6125503--6125527	11	2.3	11	100	0	50	84	0	0	16	0.63
6129964--6129991	10	2.8	10	100	0	56	89	0	10	0	0.49
6130727--6130822	48	2.0	49	80	13	110	37	7	25	30	1.83
6131214--6131251	20	1.9	20	88	0	58	34	7	23	34	1.84
6131926--6131969	20	2.2	20	92	8	72	13	0	9	77	0.99
6131931--6131968	7	5.4	7	90	9	60	13	0	10	76	1.02
6131931--6131983	28	1.9	27	92	3	88	11	0	9	79	0.94
6131926--6131983	20	2.9	19	82	14	64	12	0	8	79	0.94
6132991--6133024	9	3.9	9	84	7	52	76	0	2	20	0.92
6135886--6135958	25	2.9	25	75	0	65	42	31	8	17	1.79
6135950--6136198	80	3.1	78	83	5	320	43	25	8	22	1.80
6137523--6137845	165	2.0	166	80	5	377	38	10	13	37	1.80
6140101--6140161	9	6.4	9	76	14	52	59	6	0	34	1.24
6140100--6140262	10	16.6	9	68	21	55	61	6	1	31	1.28
6140162--6140224	32	2.0	32	84	6	83	60	7	0	31	1.26
6140172--6140269	43	2.4	42	81	5	119	62	6	2	29	1.31
6140158--6140262	10	10.2	10	68	13	70	63	5	1	28	1.27
6140337--6140526	9	19.7	9	72	17	125	62	4	2	30	1.27
6140354--6140525	10	17.6	10	70	18	96	63	4	1	30	1.23
6140384--6140525	19	7.3	19	71	12	101	64	3	1	30	1.19
6140356--6140525	38	4.4	39	75	10	134	63	4	1	30	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6140701--6140744	17	2.6	17	82	10	54	61	2	2	34	1.21
6141099--6141177	10	8.0	10	68	2	52	36	2	3	56	1.31
6141102--6141232	49	2.7	49	70	10	115	35	2	6	54	1.40
6141140--6141177	20	1.9	20	88	0	58	26	2	5	65	1.27
6141661--6141704	23	1.9	23	81	9	54	13	9	9	68	1.40
6142861--6142913	10	5.0	11	82	11	58	50	7	0	41	1.30
6142872--6142917	19	2.4	19	86	13	67	56	6	0	36	1.25
6142872--6142929	19	3.0	19	80	16	66	58	5	0	36	1.20
6142874--6142986	10	11.5	10	75	20	89	61	7	0	30	1.31
6142965--6143055	39	2.4	37	76	10	92	47	10	1	40	1.46
6143085--6143124	18	2.2	18	86	8	55	80	2	5	12	0.98
6143164--6143239	19	4.1	19	79	14	79	56	2	2	38	1.27
6143154--6143266	10	11.7	9	75	12	82	55	4	3	36	1.37
6143167--6143239	9	8.0	8	76	21	56	57	2	2	36	1.27
6143549--6143576	11	2.5	11	100	0	56	25	10	0	64	1.26
6143850--6143951	20	5.3	19	74	13	68	39	0	4	54	1.28
6143850--6143923	20	3.8	20	77	12	73	41	0	2	55	1.14
6143849--6143968	20	6.1	20	70	14	63	40	0	5	53	1.31
6147456--6147515	23	2.8	21	80	16	61	73	5	1	20	1.11
6147488--6147534	20	2.2	22	85	7	62	72	6	2	19	1.17
6147538--6147588	18	2.9	17	75	13	50	72	1	3	21	1.11
6147550--6147578	6	4.8	6	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6148354--6148453	3	33.3	3	75	7	69	57	6	5	32	1.45
6148789--6149047	55	4.7	54	77	5	189	44	13	18	23	1.85
6149833--6149871	18	2.2	18	86	9	53	10	10	0	79	0.94
6150174--6150224	18	3.1	15	83	16	57	0	13	1	84	0.71
6150174--6150219	9	5.3	9	76	7	51	0	13	2	84	0.71
6150164--6150224	12	5.2	11	75	18	52	1	14	1	81	0.84
6154863--6154956	19	4.9	18	77	14	82	74	5	4	15	1.16
6154905--6154954	13	3.8	13	79	7	57	80	0	6	14	0.90
6162255--6162312	31	2.0	30	83	10	75	44	10	12	32	1.75
6178350--6178380	10	3.2	10	90	9	55	77	0	0	22	0.77
6178354--6178378	9	2.8	9	100	0	50	84	0	0	16	0.63
6178491--6178584	47	2.0	47	84	12	122	32	11	4	51	1.58
6178703--6178747	3	15.0	3	88	9	65	68	0	2	28	1.01
6179492--6179534	3	14.3	3	80	9	52	67	2	0	30	1.03
6179537--6179575	20	2.0	20	89	0	60	58	0	2	38	1.12
6179526--6179583	24	2.4	25	81	16	68	60	0	3	36	1.14
6179829--6180083	44	5.9	44	80	6	288	43	20	13	23	1.87
6179829--6180084	132	2.0	129	86	6	356	42	19	13	23	1.87
6181057--6181134	11	6.8	12	77	16	62	8	14	0	76	1.00
6190737--6190826	43	2.1	43	87	4	128	35	10	3	51	1.52
6190855--6190889	5	6.8	5	93	6	61	82	0	0	17	0.66
6190853--6190890	11	3.5	11	92	7	69	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6190905--6190942	19	2.0	19	90	10	60	65	2	0	31	1.06
6194894--6194941	20	2.4	19	76	10	51	50	0	0	50	1.00
6194966--6195023	23	2.4	23	82	5	71	46	0	0	53	1.00
6194979--6195039	23	2.6	23	80	12	70	40	0	0	59	0.98
6194984--6195060	27	2.7	28	74	9	66	33	0	1	64	1.01
6204602--6204635	3	11.3	3	100	0	68	32	0	0	67	0.91
6206188--6206218	14	2.2	14	94	0	53	41	0	3	54	1.16
6206498--6206558	31	2.0	30	87	3	86	34	9	6	49	1.62
6206835--6206884	27	1.9	26	88	8	75	46	2	0	52	1.12
6207172--6207198	14	1.9	14	100	0	54	70	0	0	29	0.88
6207167--6207254	29	2.9	29	78	6	86	61	2	1	35	1.16
6207185--6207255	29	2.4	31	83	4	92	61	2	1	33	1.19
6207719--6207749	2	15.5	2	100	0	62	51	0	0	48	1.00
6208951--6209003	3	17.7	3	96	0	97	32	1	0	66	1.03
6210397--6210424	3	9.3	3	100	0	56	67	0	0	32	0.91
6210612--6210648	13	2.7	14	83	8	58	16	8	24	51	1.71
6214781--6214840	28	2.1	29	82	14	72	48	5	3	43	1.41
6216647--6216677	3	10.3	3	100	0	62	32	0	0	67	0.91
6217634--6217681	21	2.3	21	85	0	60	22	22	20	33	1.97
6217841--6217882	19	2.2	19	86	4	57	71	0	7	21	1.09
6218635--6218679	15	3.1	15	90	6	67	68	6	0	24	1.13
6219024--6219051	13	2.2	13	100	0	56	21	14	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6227070--6227164	44	2.2	44	84	0	118	29	10	16	43	1.82
6227185--6227270	36	2.4	36	82	0	100	27	10	12	48	1.74
6227853--6227885	12	2.6	13	85	4	50	69	3	9	18	1.28
6228782--6228997	114	1.9	110	87	5	317	49	4	7	38	1.52
6241481--6241524	16	2.8	16	93	3	72	54	2	0	43	1.12
6241641--6241704	29	2.2	28	78	15	69	48	3	0	48	1.17
6241820--6241907	36	2.4	37	81	11	92	55	2	2	39	1.25
6241938--6241981	18	2.4	18	88	0	61	65	2	0	31	1.05
6249586--6249621	2	18.0	2	88	11	56	47	2	0	50	1.15
6250626--6250697	35	2.1	35	86	5	101	44	13	2	38	1.59
6252654--6252929	142	1.9	142	95	0	498	31	11	11	45	1.76
6252684--6252973	142	2.0	142	82	2	341	33	13	14	39	1.84
6255147--6255216	35	2.0	35	94	0	122	5	37	5	51	1.50
6257050--6257088	17	2.3	17	83	12	53	74	5	2	17	1.12
6261414--6261515	49	2.1	49	94	0	177	20	21	5	51	1.68
6262324--6262359	16	2.2	16	90	0	54	63	5	2	27	1.30
6262506--6262553	17	2.8	16	78	12	51	66	4	0	29	1.10
6264375--6264409	11	3.2	11	87	0	52	62	0	2	34	1.10
6272541--6272602	25	2.5	25	84	5	81	43	4	1	50	1.33
6272509--6272643	60	2.3	59	86	6	177	42	3	3	50	1.38
6272539--6272664	60	2.1	59	81	10	141	43	3	3	49	1.37
6272851--6272898	14	3.5	14	78	16	55	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6275677--6275712	16	2.2	16	90	0	54	63	5	2	27	1.30
6286011--6286072	25	2.5	25	84	5	81	43	4	1	50	1.33
6285979--6286113	60	2.3	59	86	6	177	42	3	3	50	1.38
6286009--6286134	60	2.1	59	81	10	141	43	3	3	49	1.37
6289082--6289131	25	1.9	27	84	8	68	52	0	2	46	1.12
6289137--6289172	16	2.2	16	90	0	54	63	5	2	27	1.30
6289631--6289671	15	2.8	15	85	3	57	68	4	4	21	1.28
6290245--6290289	19	2.4	18	82	13	56	20	4	4	71	1.21
6298321--6298374	25	2.1	26	82	3	65	40	5	3	50	1.44
6298337--6298409	35	2.1	35	82	5	85	45	4	2	47	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64