genome.fa.s224.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  23  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3334132--3334206	12	6.0	12	77	16	73	85	2	10	1	0.76
3334132--3334206	30	2.6	29	76	21	84	85	2	10	1	0.76
3334133--3334201	36	1.9	35	85	2	93	85	2	10	1	0.76
3334132--3334206	31	2.6	29	78	17	84	85	2	10	1	0.76
3335918--3336228	120	2.6	120	78	6	333	19	22	12	45	1.84
3336554--3336597	3	14.7	3	100	0	88	34	0	0	65	0.93
3337247--3337298	26	2.0	26	82	14	63	48	13	21	17	1.81
3337431--3337491	22	2.8	22	78	16	72	18	1	6	73	1.12
3338693--3338840	58	2.5	58	81	6	156	20	4	20	54	1.60
3339755--3339793	19	2.0	20	85	14	55	41	7	12	38	1.72
3340363--3340401	18	2.2	18	85	0	51	41	5	17	35	1.72
3341654--3341695	17	2.5	17	88	0	57	28	0	21	50	1.49
3346724--3346750	12	2.2	12	100	0	54	51	7	0	40	1.30
3347958--3348008	22	2.3	22	100	0	102	39	11	5	43	1.66
3349472--3349517	18	2.6	18	83	13	67	71	2	0	26	0.97
3349664--3349702	2	20.5	2	89	10	64	48	0	0	51	1.00
3349971--3350017	24	2.0	24	82	0	58	53	4	2	40	1.32
3349991--3350111	57	2.2	56	81	11	149	47	0	1	49	1.17
3350627--3350676	16	3.2	15	85	2	55	60	6	0	34	1.21
3350634--3350689	16	3.6	15	85	7	60	57	8	0	33	1.30
3351521--3351581	30	2.1	27	83	16	79	47	1	0	50	1.10
3351524--3351589	29	2.2	29	87	12	91	45	3	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3354781--3354826	18	2.6	18	83	13	67	71	2	0	26	0.97
3355296--3355393	28	3.4	28	72	15	85	44	0	3	52	1.16
3355920--3355965	16	2.9	16	86	0	65	56	2	2	39	1.24
3355925--3355991	16	4.3	16	72	12	59	53	7	1	37	1.38
3356450--3356519	33	2.1	33	82	10	81	41	1	4	52	1.30
3356808--3356858	23	2.3	23	80	12	63	50	0	1	47	1.12
3356843--3356907	29	2.2	28	83	5	76	41	6	1	50	1.36
3358222--3358273	22	2.4	21	78	9	59	38	5	5	50	1.51
3360309--3360349	20	2.0	21	86	9	59	7	9	14	68	1.39
3367668--3367697	2	15.0	2	100	0	60	50	0	0	50	1.00
3368058--3368220	86	1.9	86	82	5	204	55	15	3	25	1.57
3368397--3368438	21	2.0	21	95	4	77	78	0	16	4	0.91
3371510--3371546	19	1.9	19	88	0	56	43	18	13	24	1.86
3371548--3371593	21	2.2	21	84	3	58	39	13	8	39	1.75
3374906--3374976	2	35.0	2	84	8	81	45	1	2	50	1.25
3375493--3376066	286	2.0	286	94	0	1006	45	8	8	37	1.65
3378312--3378430	53	2.2	54	83	8	145	19	1	32	46	1.60
3378440--3378477	17	2.2	17	90	0	58	18	0	34	47	1.49
3385061--3385116	21	2.6	22	77	8	62	42	3	3	50	1.37
3389415--3389471	21	2.5	23	78	18	57	31	3	5	59	1.36
3391827--3391874	22	2.2	22	96	0	87	20	37	10	31	1.87
3396300--3396333	18	1.9	17	88	5	50	11	17	17	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3399078--3399118	12	3.4	12	89	0	64	53	12	2	31	1.51
3400716--3400846	67	2.0	67	89	0	199	40	9	14	35	1.79
3401230--3401312	41	2.0	41	100	0	166	42	2	14	40	1.59
3409522--3409546	7	3.6	7	100	0	50	24	0	0	76	0.80
3418496--3418537	12	3.3	12	81	12	57	85	14	0	0	0.59
3418888--3418929	18	2.3	18	88	8	59	80	4	14	0	0.86
3420217--3420275	30	1.9	31	89	3	93	54	11	8	25	1.65
3420224--3420292	27	2.4	28	92	7	113	47	11	11	28	1.75
3420254--3420428	42	4.2	43	80	11	186	32	15	15	36	1.89
3421160--3421307	67	2.2	68	87	2	217	33	10	17	38	1.83
3421263--3421411	75	2.0	76	88	4	221	29	14	22	33	1.94
3421345--3421721	127	3.0	126	89	4	562	31	14	17	37	1.90
3421704--3421780	33	2.3	33	84	2	100	31	18	18	32	1.95
3421738--3421925	68	2.7	67	83	7	243	30	13	15	40	1.85
3439627--3439652	12	2.2	12	100	0	52	26	7	15	50	1.71
3443710--3443761	20	2.5	22	78	15	65	38	17	9	34	1.82
3443828--3443874	18	2.6	18	86	6	60	42	19	10	27	1.84
3443960--3444037	18	4.3	18	75	8	59	47	10	14	28	1.76
3443962--3444085	36	3.4	36	80	5	117	50	10	11	28	1.71
3444003--3444065	18	3.4	18	75	12	65	47	7	15	28	1.74
3444061--3444103	18	2.5	17	80	3	50	58	9	2	30	1.42
3444122--3444196	25	3.0	24	86	3	87	44	9	12	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3444579--3444679	18	5.8	17	87	6	125	41	7	10	39	1.69
3444579--3444679	35	2.9	35	82	12	127	41	7	10	39	1.69
3444697--3444844	18	8.7	18	68	9	71	35	13	14	36	1.86
3444743--3444825	32	2.6	32	84	0	103	32	13	16	37	1.88
3446593--3446667	7	11.0	7	76	11	59	10	8	1	80	0.98
3446604--3446669	13	5.0	13	75	17	64	12	6	1	80	0.96
3446611--3446667	20	2.8	21	82	15	59	10	7	1	80	0.96
3446593--3446669	27	2.9	27	77	13	86	11	7	1	79	1.00
3446604--3446669	6	10.2	6	79	12	60	12	6	1	80	0.96
3446630--3446684	13	4.1	13	81	6	65	18	7	0	74	1.04
3446630--3446684	27	2.0	27	85	0	74	18	7	0	74	1.04
3450758--3450946	94	2.0	97	86	5	267	38	11	10	39	1.76
3459666--3459699	17	1.9	18	94	5	61	35	0	2	61	1.11
3459764--3459847	33	2.5	34	81	11	93	40	0	0	59	0.97
3459785--3459831	21	2.2	22	92	3	78	34	0	0	65	0.93
3459774--3459833	16	3.7	16	78	12	61	35	0	0	65	0.93
3459821--3459871	20	2.7	19	85	8	77	50	0	0	49	1.00
3460516--3460546	2	15.5	2	100	0	62	51	0	0	48	1.00
3462532--3462570	2	19.5	2	100	0	78	51	0	0	48	1.00
3466396--3466448	12	4.3	12	75	11	54	54	18	7	18	1.67
3466388--3466447	25	2.4	25	86	10	79	55	20	6	18	1.65
3466425--3466526	39	2.6	39	78	7	102	50	19	6	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3484706--3484734	3	9.7	3	100	0	58	34	0	0	65	0.93
3490724--3490749	13	2.0	13	100	0	52	38	15	15	30	1.88
3495518--3495546	13	2.2	13	100	0	58	58	13	6	20	1.58
3497117--3497145	12	2.4	12	100	0	58	34	27	13	24	1.93
3499070--3499135	6	11.7	6	76	16	54	69	0	0	30	0.88
3499075--3499136	16	3.8	16	85	6	88	70	0	0	29	0.87
3499073--3499141	16	4.1	16	79	7	75	68	1	0	30	0.99
3499073--3499141	33	2.1	34	94	2	122	68	1	0	30	0.99
3503198--3503227	15	2.0	15	93	0	51	36	10	20	33	1.86
3511961--3512007	25	1.9	24	90	0	67	38	10	8	42	1.70
3511962--3512016	25	2.2	25	83	0	65	36	12	7	43	1.71
3521651--3521726	14	5.3	14	75	9	73	77	2	1	18	0.95
3521624--3521726	14	7.4	14	67	18	63	74	2	2	19	1.07
3521651--3521726	24	3.4	23	73	15	63	77	2	1	18	0.95
3522408--3522603	3	66.3	3	79	12	192	61	6	1	31	1.27
3539278--3539330	13	4.3	13	79	13	58	41	0	0	58	0.98
3539273--3539354	33	2.5	32	74	14	87	42	0	1	56	1.07
3539672--3539738	30	2.2	29	80	12	73	32	8	5	52	1.57
3540082--3540131	26	1.9	26	100	0	100	30	8	28	34	1.86
3547207--3547254	24	2.0	24	96	4	89	31	8	25	35	1.85
3551680--3551718	14	2.7	14	88	4	51	0	5	10	84	0.76
3551804--3551842	12	3.1	12	88	7	51	0	2	12	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3551924--3551948	6	4.2	6	100	0	50	20	32	32	16	1.94
3553371--3553570	110	1.8	110	84	4	278	41	16	18	24	1.89
3553371--3553773	198	2.0	197	84	5	521	41	16	18	22	1.90
3553480--3553658	88	2.0	88	89	2	270	41	15	19	23	1.90
3553565--3553883	109	2.9	109	85	3	408	39	18	20	22	1.93
3553549--3553883	110	3.0	109	83	2	429	39	17	20	22	1.93
3553660--3554080	197	2.1	197	81	4	467	40	17	19	21	1.91
3553768--3553970	88	2.3	88	82	3	232	42	16	18	22	1.89
3553371--3554103	307	2.4	307	84	2	936	40	17	19	22	1.91
3554064--3554106	22	1.9	23	95	4	79	32	18	23	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64