genome.fa.s224.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  58  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9512996--9513040	23	2.0	23	100	0	90	35	17	26	20	1.95
9516680--9516712	13	2.4	14	90	5	50	57	0	3	39	1.14
9516679--9516722	7	6.3	7	82	10	54	52	0	2	45	1.13
9517316--9517358	22	2.0	22	86	4	61	32	4	6	55	1.47
9517432--9517501	10	6.7	10	71	20	54	30	2	2	64	1.22
9517455--9517532	10	7.6	10	81	2	84	33	1	1	64	1.10
9518517--9518568	15	3.6	14	82	15	61	30	0	3	65	1.10
9518529--9518570	14	2.9	15	86	13	61	33	0	2	64	1.07
9518558--9518621	27	2.4	27	85	10	87	34	3	4	57	1.35
9518944--9518989	23	2.0	23	95	4	85	52	0	0	47	1.00
9520908--9520967	27	2.2	28	84	3	77	41	1	3	53	1.27
9524996--9525043	18	2.8	18	90	6	73	45	0	0	54	0.99
9528236--9528273	19	2.0	19	94	0	67	47	7	15	28	1.74
9530606--9530634	2	14.5	2	100	0	58	48	0	0	51	1.00
9531272--9531335	33	2.0	33	87	3	94	46	1	1	50	1.20
9531446--9531496	25	2.1	25	82	10	61	29	1	1	66	1.13
9531439--9531497	24	2.5	24	76	15	59	30	3	1	64	1.20
9532341--9532384	21	2.0	22	86	4	63	38	2	2	56	1.24
9532507--9532555	25	2.0	25	88	8	73	36	0	0	63	0.95
9532515--9532566	22	2.2	24	83	10	63	44	0	0	55	0.99
9538945--9538969	2	12.5	2	100	0	50	52	0	0	48	1.00
9542283--9542323	19	2.0	21	90	9	68	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9542280--9542375	49	1.9	50	87	10	144	53	1	0	45	1.07
9542262--9542342	16	5.0	16	69	26	55	48	0	0	51	1.00
9542298--9542362	28	2.3	26	82	15	69	49	1	0	49	1.10
9544910--9544954	13	3.7	12	80	14	56	66	0	2	31	1.04
9544908--9544960	24	2.1	26	89	6	83	67	0	1	30	1.01
9546298--9546359	27	2.3	26	83	8	72	54	8	3	33	1.46
9548434--9548472	20	1.9	21	89	5	62	53	0	0	46	1.00
9548448--9548499	15	3.4	15	76	5	59	51	1	1	44	1.23
9548446--9548503	31	1.9	30	89	3	89	51	1	1	44	1.21
9551141--9551197	21	2.8	21	76	12	64	68	0	19	12	1.20
9551765--9551814	19	2.5	21	78	9	61	28	4	0	68	1.08
9554094--9554141	17	2.8	17	82	14	62	66	0	0	33	0.92
9554094--9554159	21	3.4	19	80	12	64	63	0	0	36	0.95
9555176--9555215	20	2.0	20	85	0	53	47	0	0	52	1.00
9556292--9556350	28	2.0	28	83	6	73	38	0	0	61	0.96
9568243--9568299	19	2.8	20	77	17	64	47	1	5	45	1.35
9573130--9573190	21	2.9	19	71	21	50	47	1	3	47	1.28
9576127--9576165	16	2.4	16	91	0	60	28	0	5	66	1.12
9576118--9576168	27	1.9	26	88	11	77	27	0	3	68	1.07
9586237--9586275	18	2.0	20	85	9	55	46	5	5	43	1.48
9586502--9586549	14	3.2	15	82	8	53	62	8	0	29	1.24
9589308--9589360	28	1.9	27	88	3	79	49	13	7	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9591907--9591944	2	19.5	2	89	5	60	55	0	0	44	0.99
9594612--9594698	23	3.8	24	71	15	76	52	0	1	45	1.08
9594638--9594740	15	6.8	15	69	24	65	49	0	1	48	1.12
9594669--9594762	34	2.7	35	76	12	88	51	1	2	45	1.20
9594786--9595028	23	9.8	26	71	19	148	43	0	2	53	1.19
9594793--9595068	18	14.4	19	67	22	109	43	0	2	53	1.18
9594826--9595060	31	7.5	31	71	21	159	42	0	3	53	1.21
9594729--9595006	132	2.1	131	80	9	298	43	1	2	52	1.23
9594818--9594958	76	1.9	76	84	12	193	44	0	2	52	1.18
9595004--9595071	35	1.9	36	87	3	102	41	0	4	54	1.20
9594896--9595071	54	3.2	54	81	8	164	43	0	3	53	1.17
9596734--9596800	33	2.1	33	86	8	93	44	0	1	53	1.09
9596814--9596855	20	2.2	20	87	8	61	64	0	2	33	1.07
9597231--9597282	21	2.5	21	71	3	52	17	3	32	46	1.66
9597673--9597742	11	5.8	11	71	17	50	20	0	4	75	0.96
9597669--9597735	5	12.8	5	79	16	50	19	0	2	77	0.89
9597672--9597743	6	11.8	6	78	15	60	19	0	4	76	0.95
9597669--9597747	24	3.3	24	81	11	99	18	0	3	77	0.92
9597671--9597747	17	4.5	18	70	21	58	19	0	3	76	0.94
9597841--9597884	6	7.0	6	82	7	52	75	0	2	22	0.92
9597847--9597883	19	1.9	19	88	0	56	75	0	2	21	0.92
9597841--9597882	13	3.3	12	90	9	66	76	0	2	21	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9602083--9602108	11	2.4	11	100	0	52	7	7	0	84	0.77
9602543--9602669	54	2.4	54	77	9	143	22	14	14	48	1.80
9602742--9602906	55	3.0	53	78	7	161	19	18	15	46	1.85
9603017--9603270	123	2.1	123	81	3	287	20	17	14	46	1.83
9603052--9603311	123	2.1	123	83	2	317	20	18	15	45	1.85
9603667--9603871	68	3.0	68	81	0	221	35	18	10	36	1.85
9603842--9603921	34	2.4	34	78	4	90	33	20	12	33	1.90
9603791--9603948	85	1.9	85	85	2	219	33	20	9	36	1.85
9605129--9605205	7	11.4	7	79	10	81	23	1	3	71	1.10
9605135--9605205	27	2.7	27	81	14	85	25	0	4	70	1.05
9605127--9605205	34	2.4	33	87	6	106	22	1	3	72	1.08
9605129--9605205	20	3.8	20	80	11	86	23	1	3	71	1.10
9605163--9605211	20	2.5	20	86	3	73	24	0	4	71	1.03
9605307--9605358	23	2.2	23	80	12	61	73	3	0	23	1.00
9606487--9606562	40	1.9	40	100	0	152	43	23	11	21	1.85
9610932--9610991	29	2.0	30	81	9	70	60	0	5	35	1.19
9610945--9611012	37	1.9	34	82	8	82	58	0	2	38	1.13
9628537--9628566	13	2.3	13	94	0	51	10	0	3	86	0.67
9628543--9628609	34	2.0	34	93	0	116	26	4	4	64	1.32
9632148--9632187	19	2.0	20	86	13	57	27	7	2	62	1.35
9637529--9638647	566	2.0	564	82	5	1386	35	13	9	42	1.75
9643854--9643938	36	2.6	32	72	20	77	27	2	4	65	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9644044--9644093	24	2.1	24	88	0	73	50	2	0	48	1.12
9649684--9649717	3	11.3	3	100	0	68	64	0	0	35	0.94
9658756--9658820	29	2.2	30	80	5	78	56	1	0	41	1.08
9666060--9666092	14	2.3	15	85	15	52	72	3	0	24	0.98
9670022--9670046	2	12.5	2	100	0	50	0	0	48	52	1.00
9671241--9671277	2	18.5	2	100	0	74	51	0	0	48	1.00
9671630--9671660	2	15.5	2	100	0	62	48	0	0	51	1.00
9672877--9672947	24	3.0	24	79	8	65	57	0	2	39	1.13
9672906--9672956	25	2.1	25	85	7	70	58	0	0	41	0.98
9685502--9685564	29	2.3	28	79	15	69	50	0	6	42	1.27
9689007--9689031	1	25.0	1	100	0	50	0	0	0	100	0.00
9689544--9689574	15	2.1	15	100	0	62	61	0	19	19	1.35
9692486--9692524	17	2.2	18	90	4	62	23	7	5	64	1.40
9694586--9694620	15	2.2	16	90	5	54	0	5	2	91	0.50
9694586--9694620	18	2.0	18	94	5	63	0	5	2	91	0.50
9699621--9699661	19	2.2	18	91	4	64	70	4	0	24	1.06
9699811--9699846	19	1.9	18	88	5	54	33	2	0	63	1.08
9700752--9700776	6	4.2	6	100	0	50	16	32	32	20	1.94
9700336--9701277	476	2.0	471	88	3	1395	30	17	19	32	1.95
9702246--9702286	16	2.4	17	88	12	66	41	19	17	21	1.90
9705216--9705262	16	3.1	16	84	6	62	61	0	0	38	0.96
9707535--9707640	48	2.2	48	84	0	131	37	7	21	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9707569--9707666	12	7.9	12	68	6	52	37	8	21	32	1.83
9707554--9707636	36	2.3	36	77	4	96	39	8	24	27	1.84
9708661--9708686	11	2.4	11	100	0	52	26	19	15	38	1.91
9710332--9710421	42	2.1	42	83	4	110	22	26	6	44	1.77
9710351--9710439	42	2.1	42	82	0	106	24	25	6	42	1.79
9711703--9711864	42	3.9	42	76	9	136	48	14	9	27	1.74
9711695--9711876	42	4.3	41	73	8	134	50	16	9	24	1.74
9711884--9711965	42	2.0	41	85	2	110	53	15	9	20	1.70
9711878--9711997	41	2.9	42	78	3	109	55	15	9	20	1.68
9712248--9712290	22	2.0	22	100	0	86	23	13	30	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64