genome.fa.s224.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  30  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4672379--4672417	12	3.4	11	82	10	51	33	0	0	66	0.92
4672502--4672537	16	2.2	16	90	0	54	69	0	0	30	0.89
4675121--4675162	21	2.0	21	85	4	57	52	2	7	38	1.42
4675245--4675301	28	1.9	29	82	10	71	52	0	0	47	1.00
4676676--4676738	24	2.7	23	77	20	60	61	6	28	3	1.36
4678147--4678176	2	14.5	2	93	6	51	46	0	3	50	1.18
4683573--4683793	72	3.1	72	76	10	213	48	4	7	39	1.51
4683573--4683759	72	2.6	72	82	5	218	47	4	6	41	1.50
4683556--4683777	71	3.1	70	75	9	207	49	4	6	39	1.50
4683619--4683960	183	1.9	183	80	5	404	47	4	9	37	1.58
4685902--4685961	30	2.0	30	87	6	86	36	16	11	35	1.85
4686241--4686271	15	2.1	15	93	0	53	38	19	9	32	1.84
4686313--4686352	17	2.4	16	87	4	53	82	2	0	15	0.77
4693993--4694112	60	2.0	59	86	1	168	35	14	13	36	1.85
4700926--4701240	161	2.0	161	80	6	361	32	8	14	44	1.76
4702380--4702428	20	2.5	20	96	3	91	48	0	6	44	1.27
4707557--4707605	18	2.7	18	87	9	55	10	0	12	77	0.99
4707575--4707633	26	2.3	26	85	5	75	11	0	10	77	0.98
4707564--4707662	46	2.2	46	78	7	103	15	1	10	73	1.14
4707683--4707875	59	3.3	58	80	11	223	52	4	6	36	1.47
4707842--4707870	14	2.0	15	93	6	51	55	6	0	37	1.27
4707684--4707859	58	3.0	56	82	8	201	52	4	6	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4713096--4713141	23	2.0	23	91	0	74	28	4	17	50	1.65
4715171--4715419	79	3.1	79	86	2	320	35	12	18	33	1.89
4715700--4716029	130	2.5	128	81	8	364	23	13	19	44	1.85
4715829--4716044	86	2.5	86	85	4	285	23	13	19	43	1.87
4715783--4716044	44	6.0	44	79	8	259	23	12	20	43	1.86
4715694--4716039	42	8.1	42	76	11	247	24	13	19	42	1.87
4717047--4717273	62	3.8	58	79	11	230	49	3	11	34	1.57
4717046--4717272	59	3.8	59	81	12	250	50	3	11	34	1.56
4722693--4722796	52	2.0	52	86	3	147	25	27	8	37	1.86
4722824--4722864	11	3.7	11	96	0	73	46	26	0	26	1.53
4723092--4723164	26	2.8	25	79	6	83	21	39	9	28	1.85
4723092--4723198	25	4.2	26	74	15	73	20	36	10	32	1.86
4723699--4723802	52	2.0	52	88	3	156	25	26	8	38	1.85
4723830--4723870	11	3.7	11	96	0	73	46	26	0	26	1.53
4728333--4728388	18	3.2	18	70	12	53	64	0	0	35	0.94
4730491--4730566	24	3.2	24	85	5	91	55	10	1	32	1.42
4732940--4733043	50	2.1	50	90	3	165	37	16	9	36	1.81
4733864--4733961	6	16.3	6	82	0	97	66	7	3	23	1.31
4735059--4735124	34	1.9	34	96	0	123	25	21	16	36	1.94
4739631--4740102	237	2.0	239	94	0	831	27	9	12	50	1.71
4742895--4743069	88	2.0	88	93	2	298	37	8	8	45	1.66
4746711--4746745	12	2.6	14	82	17	56	34	25	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4747802--4747828	7	3.9	7	100	0	54	29	40	14	14	1.86
4748682--4748744	27	2.4	28	76	10	69	36	6	3	53	1.42
4749441--4749514	31	2.4	30	82	8	85	51	2	4	41	1.35
4749855--4749901	20	2.3	20	78	7	51	38	0	14	46	1.45
4749902--4749974	31	2.3	32	81	6	87	39	8	6	45	1.61
4750938--4750963	13	2.0	13	100	0	52	53	23	0	23	1.46
4757330--4757442	58	2.0	58	89	5	176	43	12	6	38	1.68
4757480--4757529	5	9.6	5	91	4	73	80	0	2	18	0.82
4757481--4757534	27	2.0	28	92	3	92	77	0	1	20	0.86
4757479--4757534	22	2.6	22	88	8	80	78	0	1	19	0.84
4757482--4757585	6	18.3	6	80	10	62	68	2	1	26	1.14
4757486--4757582	27	3.7	26	72	18	60	68	3	2	26	1.16
4757596--4757648	21	2.4	22	84	12	65	30	26	30	13	1.94
4757642--4757674	13	2.4	14	90	5	50	15	27	39	18	1.90
4758434--4758524	24	3.5	24	81	15	110	62	0	4	32	1.15
4758434--4758580	53	2.6	55	82	9	163	62	0	4	31	1.21
4758549--4758586	19	2.0	19	85	10	51	73	2	0	23	0.95
4760539--4760580	2	20.5	2	90	4	66	50	2	0	47	1.14
4761221--4761251	16	1.9	16	93	0	53	41	6	0	51	1.27
4768675--4768715	17	2.6	16	88	7	57	14	7	2	75	1.12
4768894--4768956	26	2.4	25	80	19	76	49	3	4	42	1.39
4768894--4768963	25	2.8	24	81	16	79	50	2	4	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4768929--4769013	16	5.6	14	77	14	73	52	1	2	43	1.21
4769391--4769463	29	2.6	28	82	6	78	46	1	2	49	1.24
4769391--4769447	29	2.0	29	89	0	87	47	1	3	47	1.29
4769955--4769983	14	2.1	14	100	0	58	51	0	0	48	1.00
4778301--4778383	42	2.0	42	87	0	121	37	9	9	43	1.70
4778343--4778588	65	3.8	65	78	2	219	33	10	17	39	1.83
4778407--4778609	65	3.1	65	80	4	196	32	10	16	40	1.83
4780984--4781008	13	1.9	13	100	0	50	40	12	0	48	1.40
4783574--4783608	18	1.9	18	88	0	52	8	22	8	60	1.54
4783731--4783764	16	2.0	18	88	11	54	20	11	11	55	1.67
4784291--4784325	3	11.7	3	93	0	61	34	2	0	62	1.10
4784290--4784328	12	3.2	12	92	0	69	33	7	0	58	1.26
4784324--4784349	3	8.7	3	100	0	52	34	30	0	34	1.58
4784846--4784906	31	1.9	32	86	3	88	29	6	18	45	1.74
4785414--4785450	17	2.2	18	85	9	51	56	16	0	27	1.40
4786121--4786201	37	2.2	37	82	8	103	19	12	7	60	1.55
4786122--4786243	37	3.0	39	77	15	99	18	12	8	61	1.54
4790605--4790986	119	3.2	118	81	3	426	17	23	16	42	1.88
4790605--4791029	119	3.6	118	79	6	410	17	23	16	42	1.89
4791323--4791353	8	3.9	8	91	0	53	19	16	0	64	1.29
4791821--4791908	31	2.8	31	87	1	122	30	9	17	43	1.80
4792156--4792188	5	6.8	5	86	6	50	15	0	3	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4792149--4792190	15	2.8	16	78	10	52	16	0	4	78	0.91
4796354--4796654	143	2.1	143	78	7	306	41	12	13	32	1.82
4802070--4802122	21	2.5	21	78	0	61	18	16	16	47	1.83
4806070--4806203	62	2.1	63	85	6	175	45	16	7	30	1.75
4807742--4807784	19	2.3	19	100	0	86	16	9	41	32	1.80
4808840--4808878	5	7.8	5	88	0	51	69	0	30	0	0.89
4810312--4810373	7	8.6	7	73	19	56	4	17	0	77	0.94
4810320--4810384	22	2.9	21	74	17	60	7	18	0	73	1.06
4811304--4811344	16	2.6	16	100	0	82	41	19	4	34	1.73
4812447--4812479	15	2.2	15	94	0	57	15	0	33	51	1.43
4812512--4812697	30	6.4	29	70	11	121	18	4	30	46	1.69
4812892--4812970	3	26.3	3	84	5	106	32	5	0	62	1.17
4813098--4813138	21	2.0	21	90	0	64	29	4	4	60	1.38
4814693--4814907	111	1.9	111	81	7	258	46	19	20	13	1.83
4814711--4815058	74	4.6	74	75	10	206	45	18	20	14	1.85
4814851--4814998	79	1.9	78	85	5	208	45	20	18	14	1.85
4814693--4815022	37	8.8	36	73	9	196	46	19	20	13	1.84
4816606--4816654	18	2.7	19	81	9	57	73	12	2	12	1.18
4816641--4816682	20	2.2	20	83	12	52	83	4	4	7	0.91
4817492--4817544	22	2.4	22	93	0	88	16	39	24	18	1.91
4817669--4817713	17	2.7	16	83	10	54	20	0	6	73	1.05
4818080--4818207	31	4.1	31	87	8	143	44	31	3	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4818085--4818230	47	3.1	45	78	10	125	45	31	2	19	1.65
4818093--4818230	16	8.8	16	80	4	138	45	31	2	19	1.65
4818085--4818232	31	4.8	31	85	7	142	45	32	2	19	1.65
4818135--4818247	15	7.4	15	78	6	111	46	32	0	19	1.56
4819771--4819956	33	5.7	33	80	5	189	33	15	19	31	1.93
4820001--4820026	9	2.9	9	100	0	52	69	0	19	11	1.18
4820061--4820100	20	2.1	20	90	9	66	47	15	5	32	1.66
4820129--4820175	22	2.1	23	88	4	69	23	25	19	31	1.98
4820129--4820188	23	2.7	23	82	7	70	23	23	21	31	1.98
4821151--4821230	33	2.4	33	82	2	88	7	17	2	72	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64