genome.fa.s224.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  63  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10905380--10905434	28	2.0	28	100	0	110	50	12	18	18	1.77
10911690--10911859	63	2.7	61	78	10	173	42	9	7	40	1.66
10922496--10922555	24	2.5	24	80	0	57	30	1	1	66	1.11
10922523--10922574	18	3.0	16	83	11	50	28	3	1	65	1.21
10922511--10922572	24	2.6	23	77	7	70	27	4	3	64	1.29
10931769--10931807	16	2.2	16	86	13	51	28	2	0	69	1.02
10936971--10937010	6	6.7	6	97	0	71	0	0	72	27	0.85
10947588--10947628	14	2.9	15	82	10	50	17	0	17	65	1.27
10956780--10956818	13	2.8	13	84	7	51	71	2	2	23	1.10
10957365--10957392	3	9.3	3	100	0	56	67	0	0	32	0.91
10957485--10957514	15	2.1	14	93	6	51	33	0	3	63	1.11
10957502--10957562	24	2.6	24	84	5	72	29	3	6	60	1.38
10957549--10957604	22	2.5	23	88	2	87	39	7	7	46	1.59
10958697--10958740	14	3.1	14	78	9	54	61	0	0	38	0.96
10960968--10960998	15	2.0	16	93	6	55	0	9	6	83	0.79
10962750--10962824	3	25.7	3	79	12	77	66	1	1	30	1.08
10962944--10963107	30	5.5	29	79	12	147	47	28	0	23	1.56
10962974--10963074	14	6.9	14	69	17	64	49	28	0	20	1.56
10963080--10963122	14	3.1	14	80	3	52	53	27	0	18	1.45
10963204--10963258	15	3.7	15	73	4	58	45	25	1	27	1.64
10963196--10963252	29	2.0	29	92	0	96	45	24	1	28	1.63
10966923--10966965	20	2.2	20	86	0	59	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10967312--10967361	18	2.8	19	85	11	70	74	0	0	26	0.83
10969529--10969574	21	2.2	21	84	0	56	67	2	0	30	1.03
10970126--10970182	26	2.2	26	78	9	64	5	8	15	70	1.31
10970475--10970508	6	5.5	6	86	6	50	79	0	0	20	0.73
10970475--10970508	13	2.8	12	86	4	50	79	0	0	20	0.73
10980675--10980741	24	2.7	24	83	4	71	40	8	2	47	1.50
10984167--10984192	3	8.7	3	100	0	52	34	0	0	65	0.93
10986725--10986755	2	16.0	2	93	6	55	48	0	0	51	1.00
10987053--10987106	27	2.0	27	86	13	76	44	0	0	55	0.99
10987433--10987491	27	2.2	26	79	5	64	28	10	0	61	1.29
10991985--10992019	2	17.5	2	100	0	70	0	48	0	51	1.00
11000671--11000716	22	2.1	22	84	8	58	54	19	0	26	1.44
11001497--11001540	3	14.7	3	100	0	88	65	0	0	34	0.93
11004120--11004149	2	15.0	2	92	0	51	50	3	0	46	1.18
11006376--11006420	2	22.5	2	100	0	90	0	48	0	51	1.00
11007119--11007143	2	12.5	2	100	0	50	48	0	0	52	1.00
11012980--11013019	19	2.1	19	90	9	64	62	0	0	37	0.95
11012987--11013061	24	3.1	24	75	9	71	65	1	1	32	1.09
11019007--11019037	12	2.6	12	94	0	53	0	19	0	80	0.71
11031366--11031415	26	1.9	26	91	0	82	40	20	18	22	1.92
11041883--11041913	2	15.5	2	93	0	53	45	0	3	51	1.17
11043035--11043101	33	2.1	30	83	8	80	14	37	11	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11043149--11043225	6	12.8	6	95	0	136	0	36	0	63	0.95
11045418--11045521	52	2.0	52	94	0	181	43	17	12	26	1.85
11056575--11056609	2	17.5	2	93	0	61	51	2	0	45	1.16
11057468--11057502	3	11.7	3	100	0	70	31	0	0	68	0.90
11057682--11057740	26	2.3	26	79	5	66	52	1	1	44	1.21
11060954--11061023	29	2.4	29	76	4	70	50	1	5	42	1.35
11061156--11061836	336	2.0	340	92	1	1136	36	13	25	24	1.92
11063639--11063687	13	3.8	13	78	7	55	22	0	0	77	0.77
11063827--11063861	18	1.9	18	88	0	52	40	5	0	54	1.24
11063853--11063915	22	2.7	23	81	16	60	52	0	0	47	1.00
11067825--11067937	33	3.4	33	88	0	163	15	13	46	25	1.82
11072988--11073213	80	2.8	80	78	4	251	44	23	7	24	1.80
11082891--11083233	135	2.6	134	78	4	361	40	19	11	27	1.87
11085622--11085646	2	12.5	2	100	0	50	52	0	0	48	1.00
11086800--11086828	11	2.5	12	88	11	51	6	0	6	86	0.72
11086823--11086948	3	41.3	3	70	23	54	32	0	5	61	1.19
11087933--11088010	5	16.4	5	79	19	87	15	3	0	80	0.85
11088038--11088433	58	6.8	58	85	8	499	45	7	12	34	1.69
11088170--11088433	111	2.3	114	87	6	385	44	7	13	34	1.71
11088184--11088433	55	4.4	56	85	6	337	44	7	13	34	1.72
11093670--11093747	11	7.6	10	74	11	52	38	3	3	53	1.37
11093670--11093747	5	15.2	5	75	14	52	38	3	3	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11093687--11093818	18	7.0	18	70	18	63	32	2	8	56	1.41
11093790--11093836	3	16.3	3	79	16	55	25	0	2	72	0.96
11094157--11094200	21	2.0	21	86	13	61	18	4	29	47	1.68
11094196--11094240	19	2.3	20	88	7	74	26	4	22	46	1.70
11094204--11094249	19	2.4	19	96	0	83	19	6	23	50	1.71
11094721--11094806	17	5.2	16	72	19	70	20	2	2	74	1.04
11094721--11094786	31	2.1	31	83	10	82	21	3	1	74	1.04
11094723--11094802	13	6.7	12	76	17	51	21	2	2	73	1.06
11094722--11094802	6	13.5	6	69	19	53	20	2	2	74	1.06
11094750--11094841	41	2.3	38	76	12	89	22	2	4	70	1.16
11099853--11100088	83	2.8	81	80	6	240	29	12	16	41	1.86
11099857--11100089	42	5.6	41	78	7	211	28	12	16	41	1.86
11100387--11100429	19	2.2	20	88	8	63	20	0	2	76	0.89
11100454--11100491	19	2.0	19	90	10	60	73	0	15	10	1.09
11100882--11101112	115	2.0	115	94	0	408	33	13	16	36	1.88
11101660--11101692	16	2.1	16	94	0	57	33	3	12	51	1.54
11104131--11104164	14	2.4	14	90	5	50	50	20	5	23	1.70
11111961--11112260	79	3.8	79	95	0	537	26	11	13	49	1.75
11112895--11112923	2	14.5	2	100	0	58	0	48	0	51	1.00
11114649--11114694	2	23.0	2	90	0	74	47	0	4	47	1.21
11114806--11114832	2	13.5	2	100	0	54	0	0	48	51	1.00
11115520--11115544	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11119234--11119281	22	2.2	21	85	3	60	35	0	0	64	0.94
11119244--11119288	22	2.0	22	82	0	54	40	0	0	60	0.97
11120478--11120516	20	1.9	21	89	5	62	2	7	0	89	0.56
11128554--11128578	4	6.2	4	100	0	50	24	0	0	76	0.80
11137065--11137099	14	2.5	14	90	0	52	11	14	0	74	1.08
11138742--11138894	64	2.4	65	79	8	170	38	11	16	33	1.85
11138742--11138866	65	1.9	65	83	6	164	41	12	14	32	1.82
11138834--11139083	125	2.0	127	83	1	315	39	10	16	34	1.83
11138919--11139101	64	2.9	63	72	5	163	40	9	15	33	1.80
11140696--11140747	27	1.9	27	81	14	63	59	5	3	30	1.39
11142364--11142423	12	4.8	13	79	8	79	45	25	8	21	1.80
11142364--11142430	25	2.7	25	90	0	107	47	25	7	19	1.75
11153340--11153432	12	8.0	11	68	12	53	30	4	4	61	1.34
11155947--11156170	62	3.6	62	77	9	181	47	4	5	42	1.48
11155947--11156200	63	4.0	64	74	8	209	46	5	5	42	1.49
11156068--11156348	148	1.9	145	82	9	354	48	7	6	37	1.58
11156215--11156410	63	3.1	62	85	7	268	47	6	7	38	1.57
11156010--11156512	211	2.4	210	85	6	680	47	7	6	37	1.59
11156342--11156495	84	1.8	84	88	5	240	48	9	6	35	1.62
11157730--11157763	15	2.1	17	89	10	54	47	0	0	52	1.00
11162334--11162370	18	2.1	18	90	10	58	37	0	2	59	1.12
11162329--11162379	18	2.5	20	76	23	54	41	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11165377--11165403	2	13.5	2	100	0	54	48	0	0	51	1.00
11169196--11169228	3	11.0	3	100	0	66	33	0	0	66	0.92
11169277--11169398	58	2.1	58	83	4	147	41	7	10	40	1.68
11170057--11174105	357	11.4	350	70	13	1291	41	9	8	40	1.68
11169908--11174210	181	24.2	180	74	9	2532	41	9	8	40	1.68
11172339--11180634	181	46.4	177	71	11	3090	41	10	8	40	1.69
11174228--11179490	362	14.7	359	75	8	3671	41	10	8	39	1.68
11174990--11175037	17	2.7	18	78	12	55	41	10	4	43	1.58
11174236--11179490	720	7.4	705	74	10	3091	41	10	8	40	1.68
11177930--11179071	539	2.1	537	79	7	1190	42	11	7	39	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64