genome.fa.s224.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  4  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288469--288519	6	8.7	6	76	2	50	15	3	5	74	1.16
288469--288519	12	4.4	11	82	7	57	15	3	5	74	1.16
289647--289694	14	3.4	14	76	21	55	50	0	0	50	1.00
289648--289697	16	3.3	16	81	18	63	52	0	0	48	1.00
289666--289701	16	2.2	16	90	5	54	52	0	2	44	1.15
289730--289764	16	2.1	17	89	5	54	51	0	2	45	1.16
290624--290656	17	2.0	17	88	5	50	27	0	0	72	0.85
290853--290903	16	3.2	15	81	10	57	47	5	0	47	1.26
290856--290912	17	3.5	16	83	9	71	45	5	0	49	1.24
290849--290929	32	2.5	32	78	13	87	49	3	0	46	1.19
291118--291185	21	3.1	22	77	8	68	45	0	2	51	1.16
291164--291209	18	2.8	16	83	9	56	47	0	0	52	1.00
291216--291276	21	2.9	21	82	7	61	47	0	1	50	1.10
291216--291272	13	4.7	12	75	16	55	47	0	1	50	1.11
291535--291715	6	28.7	6	65	25	54	45	0	1	51	1.15
291536--291724	31	5.8	33	69	21	87	44	0	1	52	1.14
291661--291706	16	2.8	16	93	3	74	52	0	0	47	1.00
292296--292349	21	2.5	23	79	14	69	46	1	0	51	1.11
292250--292338	32	2.7	31	79	11	88	47	0	4	48	1.22
293770--293811	12	3.5	12	83	6	50	52	0	4	42	1.22
293959--294000	13	3.2	13	89	0	57	47	0	0	52	1.00
294366--294431	26	2.5	27	74	16	66	37	1	4	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295114--295727	181	3.4	180	77	7	609	39	6	9	43	1.65
295763--296403	181	3.5	179	78	3	642	37	10	9	42	1.71
296134--296709	300	1.9	301	85	2	791	37	13	8	40	1.74
296430--297712	180	7.1	181	79	6	1216	42	10	7	39	1.68
295950--296885	482	1.9	482	80	3	1098	38	11	8	40	1.72
295845--297059	663	1.8	663	81	4	1495	39	10	8	40	1.71
297246--297278	16	2.1	16	88	11	50	54	6	6	33	1.50
296447--297695	356	3.5	361	79	6	1057	42	10	7	39	1.68
298068--298104	12	3.2	12	84	7	58	54	0	0	45	1.00
298204--298259	19	3.1	18	78	17	62	44	1	0	53	1.11
298212--298286	28	2.6	28	80	14	73	45	1	1	52	1.17
298350--298388	13	2.8	14	88	11	62	46	0	2	51	1.14
298377--298417	22	2.0	22	85	9	59	39	0	2	58	1.11
299363--299412	22	2.4	21	81	12	59	50	2	2	46	1.24
299739--299787	13	3.8	13	73	10	55	46	2	4	46	1.33
300145--300192	13	3.5	14	75	13	55	47	0	0	52	1.00
300143--300191	22	2.2	22	78	7	55	48	0	0	51	1.00
300464--300504	21	2.0	21	85	0	55	56	2	4	36	1.34
300890--300950	21	2.9	21	76	11	61	54	6	1	37	1.37
300927--300979	21	2.7	20	77	13	56	52	0	1	45	1.11
301163--301202	21	1.9	21	85	10	55	52	10	0	37	1.35
302666--302698	11	3.1	11	95	4	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302666--302712	11	4.6	10	86	7	51	48	0	0	51	1.00
302663--302721	23	2.4	24	78	13	59	50	1	0	47	1.11
302790--302846	17	3.2	18	72	20	57	49	1	0	49	1.11
302930--303000	7	10.7	7	78	11	53	50	1	2	45	1.25
303163--303210	25	2.0	24	84	12	62	43	0	2	54	1.12
303184--303250	28	2.4	28	82	14	84	44	1	0	53	1.09
303595--303773	36	5.5	35	66	27	133	51	1	8	37	1.43
303456--303785	63	5.3	63	98	1	630	50	1	9	39	1.44
304448--304567	12	9.2	13	65	23	56	47	2	1	48	1.25
304519--304592	31	2.3	34	81	9	93	48	4	1	45	1.29
304693--304743	17	3.0	16	82	8	57	52	0	0	47	1.00
304703--304759	23	2.4	25	82	8	73	47	0	1	50	1.11
304687--304766	33	2.5	33	80	8	92	48	0	1	50	1.08
305168--305219	24	2.0	26	85	14	72	53	0	0	46	1.00
306273--306333	17	3.3	19	80	19	67	55	0	4	39	1.21
306343--306452	17	6.4	17	67	23	70	50	0	1	48	1.11
306376--306400	13	1.9	13	100	0	50	52	0	0	48	1.00
306515--306563	13	3.6	14	77	17	50	48	2	0	48	1.12
306982--307028	21	2.2	22	85	11	62	46	4	0	48	1.21
307159--307221	19	3.5	19	79	12	62	49	0	1	49	1.10
307187--307224	19	2.0	20	94	5	69	44	0	5	50	1.24
307481--307533	24	2.2	24	87	9	74	47	3	0	49	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308717--308777	22	3.0	20	77	17	54	42	1	3	52	1.27
309017--309103	45	1.9	45	82	13	108	48	1	2	48	1.21
309733--309781	22	2.2	23	85	10	66	55	4	0	40	1.19
309839--309918	22	3.5	26	69	24	65	45	1	0	53	1.08
309870--309940	27	2.7	27	82	6	76	46	1	1	50	1.18
309978--310026	23	2.0	24	84	7	64	44	0	2	53	1.12
310118--310168	10	5.2	11	73	22	51	47	0	0	52	1.00
310172--310236	24	2.8	22	73	15	58	49	1	1	47	1.20
310257--310358	18	5.8	19	69	22	73	50	0	0	49	1.07
310203--310317	34	3.4	34	73	18	89	46	0	0	52	1.06
310304--310351	13	3.4	14	80	16	55	52	0	0	47	1.00
311409--311446	17	2.2	17	86	9	51	42	0	2	55	1.14
312071--312115	18	2.5	18	81	0	54	40	6	0	53	1.27
312434--312500	23	2.8	24	82	10	68	46	2	2	47	1.33
312463--312521	23	2.6	23	78	13	68	52	0	3	44	1.17
312467--312520	22	2.3	23	78	15	58	51	0	3	44	1.19
312733--312776	22	2.0	23	86	13	65	50	0	0	50	1.00
313630--313675	21	2.0	21	84	12	56	54	0	0	45	0.99
314212--314266	28	1.9	28	89	10	85	52	0	0	47	1.00
314251--314293	18	2.4	18	82	17	54	51	0	2	46	1.13
314408--314450	22	2.0	22	85	0	59	55	0	2	41	1.12
314642--314730	24	3.6	24	74	21	69	51	1	1	46	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314652--314700	18	2.7	18	79	14	57	53	0	0	46	1.00
314837--314875	21	1.9	20	89	5	60	51	5	2	41	1.38
315216--315284	31	2.3	31	82	10	88	50	1	2	44	1.25
315432--315501	15	4.6	15	77	19	65	45	1	1	51	1.18
316290--316358	21	3.2	21	80	11	70	44	4	0	50	1.21
316365--316403	12	3.4	11	82	10	51	48	0	2	48	1.15
317285--317402	24	5.1	24	71	12	86	54	0	1	44	1.10
317301--317367	20	3.6	19	74	20	61	50	0	1	47	1.10
317823--318437	178	3.4	178	79	8	642	43	10	7	39	1.67
317823--318437	182	3.4	181	80	8	691	43	10	7	39	1.67
318483--319624	180	6.4	177	75	9	820	41	10	7	40	1.68
318483--319592	540	2.1	540	80	6	1223	41	10	7	40	1.68
319908--319993	6	14.8	6	68	22	51	45	3	0	51	1.18
319908--319977	22	3.2	21	84	8	86	45	2	0	51	1.16
319934--320012	10	7.5	10	71	19	54	45	2	0	51	1.14
319909--319998	26	3.6	26	78	19	77	45	3	0	51	1.18
321931--321993	23	2.5	26	73	23	64	36	3	1	58	1.23
323518--324678	538	2.1	539	81	7	1311	40	8	10	40	1.70
323215--324678	181	8.1	180	78	6	1274	40	8	10	40	1.70
324602--324770	92	1.8	91	82	5	214	43	10	11	34	1.74
324236--325131	458	2.0	452	80	8	998	41	9	9	39	1.71
324055--325330	638	2.0	633	92	2	2103	41	9	9	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324694--325311	180	3.4	179	74	10	256	40	9	9	40	1.70
324688--327082	181	13.4	181	74	10	1407	40	8	9	41	1.67
325055--327102	542	3.8	527	76	9	1494	40	8	9	41	1.67
326935--327371	229	1.9	227	78	6	472	39	8	8	43	1.66
326368--327771	771	1.8	770	80	5	1706	39	7	9	43	1.66
328060--328702	181	3.6	181	80	4	676	39	8	10	41	1.69
328974--329016	23	2.0	23	86	9	63	46	2	6	44	1.43
329537--329566	12	2.5	12	94	0	51	46	3	0	50	1.18
329677--329715	7	5.4	7	82	17	53	43	0	0	56	0.99
329671--329724	20	2.7	21	83	13	69	46	0	1	51	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64