genome.fa.s224.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  46  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7303651--7303716	33	2.0	33	87	0	96	28	19	18	33	1.95
7304306--7304508	33	6.2	33	75	6	162	31	18	14	35	1.91
7304356--7304508	66	2.3	66	82	3	184	32	18	13	34	1.91
7311502--7311538	8	4.5	8	89	3	56	83	0	16	0	0.64
7311914--7312504	99	6.1	99	75	5	465	43	18	12	25	1.85
7312464--7312544	24	3.5	24	79	6	112	46	14	7	30	1.72
7311953--7312505	197	2.8	196	78	4	578	43	19	12	24	1.85
7311953--7312505	98	5.6	98	73	6	429	43	19	12	24	1.85
7312459--7312550	46	2.0	46	100	0	184	47	13	8	30	1.72
7312375--7312648	145	1.9	145	84	5	376	45	17	10	26	1.81
7312518--7312888	98	3.8	97	78	8	367	43	18	11	26	1.83
7312505--7312866	196	1.8	196	88	2	557	43	17	10	28	1.83
7312901--7313340	99	4.4	98	81	4	474	42	19	12	25	1.86
7312901--7313340	198	2.2	198	82	6	523	42	19	12	25	1.86
7313067--7313689	241	2.6	239	78	7	652	42	18	12	26	1.86
7313364--7313580	99	2.2	99	86	1	292	44	17	13	25	1.85
7314329--7314429	36	2.8	35	83	7	130	34	6	12	45	1.69
7314406--7314453	24	2.0	25	91	4	80	33	4	12	50	1.59
7315779--7315820	21	2.0	22	95	4	77	2	4	4	88	0.71
7315779--7315820	22	2.0	21	90	4	66	2	4	4	88	0.71
7315786--7315828	19	2.3	19	83	0	50	4	6	4	83	0.89
7319195--7319251	23	2.6	23	81	10	57	3	1	17	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7319193--7319240	18	2.6	17	78	12	51	4	0	18	77	0.93
7320836--7320880	21	2.1	21	83	0	54	68	0	0	31	0.89
7321678--7321729	21	2.4	22	77	6	61	9	13	42	34	1.77
7322632--7322664	17	1.9	17	93	0	57	36	27	12	24	1.91
7322649--7323013	43	8.5	43	82	6	384	29	12	20	37	1.90
7322671--7323013	173	2.0	173	83	4	442	28	12	20	37	1.89
7323872--7323939	21	3.4	19	73	15	57	29	4	8	57	1.49
7323830--7324037	111	1.9	111	92	0	353	31	7	6	54	1.54
7323986--7324082	51	1.9	51	87	4	142	34	7	9	49	1.62
7324035--7324175	21	6.9	20	75	10	133	31	7	12	48	1.70
7323955--7324082	51	2.6	47	71	17	107	32	8	7	51	1.61
7324038--7324177	41	3.4	41	89	2	201	30	7	12	48	1.70
7324162--7324245	28	3.1	28	70	14	79	28	5	10	54	1.58
7324219--7324293	19	3.8	20	76	15	66	33	4	9	53	1.52
7324148--7324274	52	2.5	51	74	13	116	29	5	11	52	1.60
7326956--7327634	368	1.8	368	84	2	914	35	27	11	26	1.90
7328054--7328295	122	2.0	122	93	0	412	28	22	13	35	1.92
7330001--7330317	21	15.4	21	72	14	148	35	5	7	51	1.53
7330002--7330098	41	2.3	42	85	13	130	37	5	3	54	1.38
7330002--7330098	9	9.3	11	66	28	52	37	5	3	54	1.38
7330082--7330115	18	1.9	18	88	5	52	32	0	11	55	1.36
7330023--7330179	81	2.0	79	82	5	190	33	5	8	52	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7330347--7330395	23	2.1	24	84	3	64	38	6	10	44	1.63
7330441--7330488	21	2.3	20	82	10	53	50	8	2	39	1.44
7330461--7330581	21	5.7	21	67	12	68	53	10	4	31	1.54
7330588--7330731	21	6.9	21	75	9	64	52	7	5	34	1.53
7330554--7330624	37	1.9	37	82	2	90	46	11	8	33	1.70
7330645--7330724	20	3.9	20	85	4	88	58	5	1	35	1.28
7330666--7330725	11	5.7	11	72	18	56	60	5	0	35	1.19
7330766--7330826	21	3.0	21	73	20	65	50	8	4	36	1.54
7330868--7330943	9	7.2	11	75	20	56	53	3	1	40	1.27
7332717--7332757	2	20.5	2	100	0	82	0	48	0	51	1.00
7336926--7336962	20	1.9	18	89	10	56	64	0	0	35	0.94
7336969--7337086	36	3.4	34	72	15	89	49	4	0	45	1.27
7336962--7337071	34	3.1	34	75	13	91	48	2	0	48	1.22
7337998--7338036	13	2.9	13	88	3	51	30	0	2	66	1.05
7343401--7343455	24	2.2	24	84	15	69	12	10	1	74	1.15
7347955--7347988	16	2.2	15	89	5	50	82	5	11	0	0.83
7348420--7348463	12	3.8	12	81	3	54	84	0	13	2	0.73
7349749--7349883	36	4.1	35	70	24	114	42	11	8	37	1.71
7349773--7349819	24	2.0	24	95	0	85	48	12	4	34	1.61
7349797--7349897	36	2.9	34	82	8	132	42	13	6	36	1.72
7349869--7349918	26	2.0	26	84	7	68	44	12	10	34	1.75
7349866--7349921	26	2.3	23	77	16	60	41	14	10	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7350632--7350847	99	2.2	99	86	4	294	24	12	18	45	1.83
7350504--7351032	241	2.2	239	83	4	652	26	12	18	43	1.85
7350872--7351308	99	4.4	99	78	6	393	24	11	18	44	1.84
7350731--7350993	142	1.9	141	80	4	314	26	12	17	43	1.84
7350983--7351630	339	1.9	337	79	4	732	25	12	18	43	1.84
7350631--7351722	437	2.5	436	80	4	1220	25	12	18	43	1.84
7351079--7351519	241	1.8	240	81	3	555	26	12	17	43	1.85
7351330--7352308	98	10.0	99	79	4	829	26	12	18	43	1.85
7351333--7352274	197	4.8	198	80	5	878	26	11	18	42	1.85
7359757--7359960	33	6.2	33	76	6	173	34	15	19	30	1.93
7360551--7360626	33	2.3	33	86	0	98	32	18	22	26	1.97
7361019--7361080	24	2.5	25	86	2	81	41	12	17	27	1.86
7361069--7361156	41	2.1	43	85	6	117	31	15	19	32	1.93
7361116--7361323	88	2.4	88	81	1	238	30	12	22	34	1.92
7361461--7361570	41	2.9	37	76	12	123	27	9	20	42	1.82
7361551--7361759	87	2.3	89	80	4	235	32	11	21	34	1.90
7363133--7363162	12	2.5	12	94	0	51	0	6	3	90	0.56
7365804--7365838	15	2.3	15	90	0	52	74	0	5	20	1.02
7366187--7366237	3	17.0	3	100	0	102	66	0	0	33	0.92
7366224--7366267	17	2.5	17	85	7	52	56	4	0	38	1.20
7366714--7366785	32	2.4	31	81	6	85	48	1	1	48	1.18
7368070--7368102	2	16.5	2	93	0	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371331--7371433	34	3.0	33	73	5	98	36	4	10	47	1.60
7373019--7373057	19	2.1	19	85	9	53	69	2	2	25	1.14
7373688--7373728	20	2.0	21	86	13	59	58	0	39	2	1.11
7373928--7373992	34	1.9	34	90	6	105	56	4	1	36	1.29
7374361--7374499	73	1.9	72	85	7	192	39	11	6	42	1.67
7374361--7374519	73	2.2	73	81	8	175	38	11	5	44	1.64
7374383--7374588	72	2.9	71	78	10	179	38	11	6	43	1.67
7375198--7375259	19	3.2	19	71	11	54	51	1	1	45	1.20
7375257--7375330	9	8.2	9	76	19	50	75	1	5	17	1.06
7375257--7375333	16	4.9	16	70	22	56	76	1	5	16	1.03
7375560--7375614	4	15.5	4	96	3	61	27	0	0	72	0.85
7375560--7375620	12	5.8	11	92	7	69	27	0	0	72	0.85
7375585--7375622	3	12.3	3	94	5	67	31	0	0	68	0.90
7379124--7379175	21	2.3	23	80	9	54	36	1	3	57	1.28
7383003--7383077	22	3.4	22	92	0	114	20	28	34	17	1.95
7387290--7387354	14	4.3	15	74	16	62	50	1	4	43	1.32
7387397--7387436	19	2.0	20	85	4	55	40	10	0	50	1.36
7387478--7387527	24	2.1	24	100	0	100	44	10	12	34	1.75
7388346--7388411	18	3.5	18	72	11	60	51	4	0	43	1.22
7388336--7388413	39	2.0	39	92	0	129	51	6	0	42	1.27
7388355--7388413	12	4.7	12	72	25	50	54	3	0	42	1.17
7393149--7393465	63	5.0	63	71	12	209	44	9	8	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7393149--7393516	126	2.9	127	81	2	434	45	9	8	36	1.67
7399425--7399939	59	8.7	58	83	9	605	46	6	12	34	1.67
7399425--7399939	117	4.3	116	86	6	660	46	6	12	34	1.67
7411820--7411860	5	8.6	5	84	15	52	39	0	0	60	0.96
7411820--7411860	9	4.3	9	84	9	55	39	0	0	60	0.96
7411826--7411869	19	2.3	19	84	7	54	38	4	0	56	1.20
7411815--7411900	29	3.3	26	68	19	72	45	2	0	52	1.13
7411911--7411939	6	5.0	6	91	8	51	31	0	0	68	0.89
7411995--7412051	25	2.4	23	82	5	69	35	0	3	61	1.13
7411995--7412058	25	2.7	23	75	13	67	34	0	3	62	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64