genome.fa.s224.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  59  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9714270--9714311	10	4.3	10	75	6	50	35	2	0	61	1.09
9714337--9714373	15	2.4	17	86	13	53	43	0	0	56	0.99
9714462--9714521	25	2.4	25	80	5	68	41	1	3	53	1.27
9720709--9720738	14	2.1	15	93	6	53	53	23	23	0	1.46
9724442--9724481	11	3.5	11	86	3	53	35	2	0	62	1.09
9725904--9725950	21	2.1	22	84	7	60	51	0	0	48	1.00
9730650--9730682	2	16.5	2	93	0	57	48	0	0	51	1.00
9734016--9734067	25	2.0	26	81	3	61	32	0	7	59	1.26
9749833--9749869	18	2.0	19	89	5	58	24	16	10	48	1.77
9755201--9755248	22	2.2	21	85	10	62	50	0	2	47	1.12
9762788--9762826	15	2.7	15	85	14	55	33	0	2	64	1.08
9777021--9777102	28	2.9	29	89	8	125	23	23	4	48	1.70
9787590--9787617	2	14.0	2	100	0	56	50	0	0	50	1.00
9787806--9787853	18	2.8	17	84	6	62	33	0	0	66	0.92
9787847--9787892	21	2.2	21	88	3	67	45	0	0	54	0.99
9787857--9787900	21	2.0	21	91	4	70	45	0	0	54	0.99
9788557--9788625	12	5.7	13	72	14	58	69	0	0	30	0.89
9788642--9788741	40	2.5	40	72	13	91	49	5	4	42	1.43
9792236--9792263	3	9.3	3	100	0	56	32	35	32	0	1.58
9793077--9793166	45	2.0	45	97	0	171	23	13	32	31	1.93
9793211--9793342	69	1.9	69	85	3	185	27	20	27	25	1.99
9793846--9793872	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9795892--9796199	148	2.1	148	92	0	508	42	17	18	22	1.89
9798842--9798887	13	3.5	13	83	13	58	36	0	10	52	1.37
9801039--9801077	20	2.0	20	84	0	51	0	2	23	74	0.94
9801039--9801078	21	2.0	20	85	5	53	0	2	22	75	0.93
9818963--9819035	22	3.4	21	88	7	103	50	0	0	49	1.00
9820418--9820502	29	3.2	27	79	15	97	64	3	0	31	1.10
9820557--9820633	30	2.6	30	85	2	102	41	6	0	51	1.27
9824431--9824472	17	2.3	18	88	12	59	52	0	0	47	1.00
9828792--9829149	134	2.7	131	82	6	382	41	5	6	45	1.55
9828958--9829149	65	2.9	69	72	14	184	40	5	7	46	1.54
9828792--9829149	132	2.7	132	82	5	393	41	5	6	45	1.55
9834945--9834975	15	2.1	15	100	0	62	48	12	6	32	1.67
9835160--9835236	25	3.0	25	69	10	66	28	9	11	50	1.69
9835156--9835259	51	2.0	51	87	3	147	27	10	12	49	1.74
9835918--9835949	16	1.9	17	93	6	57	9	6	9	75	1.20
9836216--9836270	23	2.3	23	84	3	74	23	3	10	61	1.44
9852820--9852845	12	2.2	12	100	0	52	53	0	0	46	1.00
9855336--9855362	13	2.1	13	100	0	54	7	7	22	62	1.46
9866730--9866769	21	1.9	21	89	0	62	45	7	0	47	1.31
9870146--9870190	15	3.0	15	76	0	54	24	28	35	11	1.90
9871347--9871371	2	12.5	2	100	0	50	48	0	0	52	1.00
9872656--9872703	2	23.5	2	82	4	60	45	2	4	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9872656--9872710	27	2.0	27	96	0	101	43	1	7	47	1.41
9874339--9874495	52	3.0	52	85	3	210	28	21	7	42	1.80
9874863--9874916	25	2.2	25	89	0	81	18	27	7	46	1.76
9875459--9875615	52	3.0	51	81	3	163	30	22	6	40	1.79
9876162--9876237	5	13.8	5	77	13	53	55	0	0	44	0.99
9876157--9876218	29	2.1	30	82	8	83	48	0	0	51	1.00
9877254--9877305	9	5.8	9	77	4	52	25	3	1	69	1.16
9877261--9877305	18	2.6	18	85	3	65	26	4	0	68	1.08
9877304--9877339	14	2.6	14	91	4	56	0	19	0	80	0.71
9878274--9878305	12	2.4	14	90	10	50	15	25	34	25	1.95
9878427--9878484	29	2.2	25	84	12	71	67	5	0	27	1.12
9884694--9884783	34	2.6	34	91	0	135	40	14	12	33	1.83
9885141--9885289	66	2.3	66	85	2	192	25	11	20	42	1.86
9885086--9885386	165	1.8	165	86	1	442	24	12	20	42	1.87
9885208--9885483	99	2.8	97	75	8	315	24	13	21	40	1.89
9885404--9885551	66	2.2	66	86	0	206	23	12	21	42	1.86
9885576--9885657	42	2.0	42	87	4	121	24	13	19	42	1.87
9885647--9885695	24	2.0	24	84	4	62	20	10	22	46	1.80
9885618--9885953	99	3.4	99	77	6	351	23	13	20	41	1.88
9885469--9885763	141	2.1	141	84	0	401	24	12	20	42	1.87
9886120--9886256	49	2.8	49	88	4	204	27	10	17	45	1.80
9886411--9886473	33	1.9	33	90	3	101	17	9	0	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9886397--9886477	38	2.2	36	84	10	101	16	8	2	72	1.19
9886473--9886512	10	4.1	10	93	3	64	0	25	0	75	0.81
9886422--9886493	14	4.8	14	73	15	54	9	15	0	75	1.05
9886461--9886513	20	2.6	20	77	14	63	0	24	0	75	0.80
9886470--9886520	20	2.7	19	75	24	54	0	27	1	70	0.98
9886751--9886795	23	1.9	24	82	13	58	60	8	20	11	1.57
9891444--9891482	16	2.4	16	78	0	51	20	5	0	74	1.01
9894050--9894083	2	17.5	2	93	6	61	50	0	0	50	1.00
9894363--9894405	12	3.7	12	87	12	63	53	0	9	37	1.33
9897186--9897215	2	15.0	2	100	0	60	50	0	0	50	1.00
9898608--9898653	21	2.1	22	84	4	58	50	0	2	47	1.13
9898606--9898655	22	2.3	23	79	10	59	50	0	2	48	1.12
9898690--9898769	38	2.1	37	81	6	90	50	3	2	43	1.33
9901514--9901543	14	2.1	14	100	0	60	46	13	20	20	1.83
9905147--9905189	22	2.0	22	90	9	70	32	9	11	46	1.72
9909023--9909066	22	2.0	22	95	0	79	31	11	13	43	1.80
9918782--9918829	24	1.9	26	91	8	82	22	10	0	66	1.22
9918782--9918829	25	1.9	25	87	8	71	22	10	0	66	1.22
9918913--9918957	21	2.1	21	88	8	65	77	6	13	2	1.05
9919479--9919520	12	3.5	12	78	12	50	11	7	0	80	0.88
9928117--9928171	18	2.9	18	75	5	56	58	3	0	38	1.16
9928836--9928864	14	2.1	14	93	6	51	48	6	0	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9929187--9929219	15	2.1	16	88	5	50	54	9	9	27	1.62
9929249--9929291	20	2.2	20	91	8	70	65	0	0	34	0.93
9930124--9930196	32	2.3	32	83	9	87	46	0	0	53	1.00
9936218--9936247	2	14.5	2	93	6	51	46	0	3	50	1.18
9936257--9936312	27	2.0	28	82	3	69	48	0	5	46	1.25
9941986--9942038	26	2.0	26	100	0	106	32	18	18	30	1.96
9944754--9944780	6	4.5	6	100	0	54	51	0	0	48	1.00
9950751--9950797	24	2.0	23	84	8	60	51	0	6	42	1.27
9955465--9955509	18	2.4	19	81	11	56	44	0	2	53	1.13
9963129--9963157	1	29.0	1	100	0	58	100	0	0	0	0.00
9966301--9966388	30	3.0	30	70	11	83	37	13	1	47	1.51
9968183--9968216	12	2.8	13	86	13	54	73	5	0	20	1.04
9968226--9968266	22	2.0	22	90	9	68	60	0	0	39	0.96
9968291--9968348	14	4.1	14	75	18	50	58	1	1	37	1.18
9969819--9969894	35	2.2	36	81	13	88	64	0	0	35	0.94
9969826--9969859	10	3.4	10	83	0	50	67	0	0	32	0.91
9974038--9974070	17	1.9	17	93	0	57	18	48	3	30	1.63
9975250--9975285	7	4.9	7	90	10	54	55	0	2	41	1.14
9976770--9976806	7	5.3	7	96	0	65	45	29	0	24	1.53
9986881--9986943	29	2.1	29	85	8	81	60	3	1	34	1.22
9995391--9995424	16	2.1	17	88	5	52	23	0	8	67	1.18
9995535--9995572	17	2.3	17	86	4	51	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9996466--9996512	21	2.2	21	85	7	60	44	2	6	46	1.40
10003512--10003556	4	11.2	4	95	0	81	48	22	0	28	1.50
10008018--10008093	30	2.5	31	82	6	93	32	23	9	34	1.87
10010594--10010740	21	7.0	21	84	0	159	40	28	6	23	1.80
10010593--10010733	63	2.2	63	87	0	201	39	28	7	24	1.81
10011366--10011412	13	3.1	15	82	11	53	65	10	0	23	1.23
10016087--10016212	51	2.3	56	78	14	163	43	7	23	25	1.80
10016094--10016203	51	2.2	51	91	0	175	43	7	22	26	1.79
10017334--10017367	15	2.3	15	89	0	50	52	2	23	20	1.60
10020931--10020982	17	3.2	17	75	5	54	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64