genome.fa.s224.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  62  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10561291--10561329	11	3.4	11	86	13	60	69	0	2	28	1.02
10561429--10561475	18	2.5	19	82	6	51	53	4	2	40	1.32
10562131--10562176	21	2.2	21	84	7	58	39	15	0	45	1.46
10569361--10569390	11	2.6	12	94	5	53	3	0	13	83	0.77
10570331--10570368	15	2.4	16	82	8	51	50	7	0	42	1.31
10573663--10573689	4	6.8	4	100	0	54	25	0	22	51	1.48
10575055--10575081	2	13.5	2	100	0	54	48	0	0	51	1.00
10575602--10575658	8	7.1	8	81	0	60	42	1	1	54	1.21
10575602--10575658	6	9.5	6	90	0	60	42	1	1	54	1.21
10575611--10575827	108	2.0	108	95	0	389	40	7	15	35	1.77
10578624--10578648	13	1.9	13	100	0	50	40	0	12	48	1.40
10579132--10579205	37	2.0	37	97	0	139	44	22	10	21	1.83
10580499--10580532	16	2.1	16	94	0	59	50	2	26	20	1.63
10580541--10580588	10	4.8	10	83	16	64	31	0	0	68	0.90
10580541--10580587	15	3.1	15	75	19	53	29	0	0	70	0.88
10586329--10586362	18	1.9	17	88	5	50	38	0	0	61	0.96
10586381--10586421	20	2.0	20	90	0	64	80	4	4	9	1.00
10590729--10590816	44	2.0	44	88	0	131	31	26	12	29	1.93
10594472--10594515	18	2.2	20	88	11	65	50	0	0	50	1.00
10595036--10595101	23	2.9	23	71	8	64	63	1	1	33	1.13
10599989--10600046	27	2.1	27	81	6	64	32	10	8	48	1.68
10605647--10605683	17	2.1	19	85	10	51	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10607581--10607610	6	5.0	6	91	0	51	16	20	33	30	1.94
10611057--10611174	58	2.0	58	96	0	218	30	17	13	38	1.89
10619086--10619118	17	2.1	16	88	11	50	48	6	0	45	1.27
10620741--10620820	18	4.2	18	75	12	54	58	0	1	40	1.06
10620735--10620863	43	2.9	44	74	17	122	54	0	1	44	1.09
10620784--10620870	33	2.4	35	77	16	88	52	0	0	47	1.00
10620832--10620901	32	2.2	32	85	12	92	51	0	1	47	1.09
10621653--10621691	17	2.4	16	87	8	53	61	0	2	35	1.10
10622591--10622632	12	3.3	12	76	23	50	64	0	0	35	0.94
10629398--10629424	2	13.5	2	100	0	54	48	0	0	51	1.00
10645936--10645965	15	2.0	15	100	0	60	6	13	13	66	1.43
10648158--10648197	19	2.1	19	90	4	62	67	0	2	30	1.04
10661030--10661061	13	2.4	14	85	15	50	0	0	21	78	0.76
10669386--10669445	30	2.0	30	96	0	111	25	16	5	53	1.63
10677066--10677129	12	5.2	12	75	15	51	46	0	1	51	1.10
10677077--10677120	14	3.4	13	84	9	54	50	0	0	50	1.00
10684405--10684433	7	4.1	7	100	0	58	44	0	0	55	0.99
10706370--10706402	13	2.5	13	85	14	50	48	9	0	42	1.35
10717845--10717918	21	3.6	21	69	18	66	36	1	0	62	1.04
10733943--10734003	19	3.4	18	77	18	65	67	0	4	27	1.11
10747728--10747806	41	1.9	41	87	5	115	51	10	10	27	1.67
10753656--10753710	27	2.1	25	83	12	67	36	1	0	61	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10755040--10755078	17	2.4	17	91	4	62	74	0	5	20	1.01
10756967--10756995	2	14.5	2	100	0	58	51	0	48	0	1.00
10761618--10761650	17	2.0	17	88	5	50	42	0	0	57	0.98
10761917--10761970	28	1.9	28	84	0	72	48	7	1	42	1.42
10761944--10762023	42	1.9	42	84	5	108	48	2	1	47	1.23
10762166--10762211	22	2.0	24	84	12	62	52	2	6	39	1.40
10762165--10762212	21	2.2	21	79	13	53	52	2	8	37	1.44
10762208--10762289	41	2.0	40	84	11	105	51	0	2	46	1.14
10762222--10762292	22	3.4	22	72	21	71	50	0	1	47	1.09
10762388--10762445	26	2.3	26	88	8	84	46	0	1	51	1.11
10762321--10762444	16	7.9	16	70	21	61	45	0	1	51	1.16
10763136--10763174	3	13.0	3	100	0	78	66	0	33	0	0.92
10763300--10763342	20	2.1	21	91	4	70	62	6	4	25	1.40
10764119--10764298	60	3.0	60	91	2	272	38	19	18	23	1.93
10764251--10764281	16	1.9	16	100	0	62	32	25	16	25	1.96
10767444--10767496	26	2.0	26	85	0	70	39	3	0	56	1.17
10769211--10769280	32	2.2	33	86	2	97	45	2	14	37	1.59
10770614--10770667	19	3.0	20	79	15	64	48	0	0	51	1.00
10776703--10776769	33	2.0	33	94	0	116	40	13	14	31	1.85
10786922--10786970	20	2.6	18	75	18	55	30	4	0	65	1.11
10786933--10786992	27	2.1	27	81	6	66	30	1	1	66	1.11
10787145--10787184	21	2.0	21	85	5	55	25	2	5	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10787270--10787301	9	3.6	9	100	0	64	68	18	0	12	1.20
10787372--10787399	10	2.8	10	100	0	56	10	17	32	39	1.84
10788357--10788382	2	13.0	2	100	0	52	50	0	0	50	1.00
10796914--10796966	27	2.1	26	86	10	74	30	1	0	67	1.01
10796913--10796973	29	2.2	27	80	11	70	34	1	0	63	1.04
10798757--10799055	58	5.1	56	78	10	285	39	12	5	42	1.66
10798757--10799055	116	2.5	115	78	10	327	39	12	5	42	1.66
10798857--10799034	64	2.9	64	85	7	219	40	12	5	42	1.64
10799065--10799104	5	7.4	5	94	5	53	82	0	0	17	0.67
10799064--10799101	6	6.7	6	88	11	62	84	0	0	15	0.63
10799064--10799101	11	3.4	11	92	7	67	84	0	0	15	0.63
10799064--10799101	17	2.2	17	90	9	60	84	0	0	15	0.63
10799981--10800031	20	2.6	19	81	9	57	60	0	1	37	1.08
10799940--10800090	53	3.0	51	78	12	141	62	1	3	33	1.20
10800293--10800540	41	5.7	41	75	12	183	37	19	15	27	1.92
10800372--10800546	93	1.9	93	86	0	251	36	17	17	29	1.92
10801600--10801657	18	3.4	16	88	9	71	12	13	0	74	1.08
10801600--10801645	16	2.7	17	90	6	67	10	15	0	73	1.08
10801619--10801661	23	1.9	23	95	4	79	11	9	0	79	0.95
10801616--10801657	16	2.5	17	92	7	68	11	9	0	78	0.96
10801615--10801668	22	2.4	23	84	3	83	9	7	0	83	0.82
10811595--10811867	58	4.7	60	82	7	305	34	13	6	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10811898--10811938	17	2.4	16	88	8	55	78	0	4	17	0.93
10811955--10811988	17	2.0	17	88	0	50	70	2	0	26	1.01
10811955--10811988	14	2.5	13	90	9	50	70	2	0	26	1.01
10812055--10812079	13	1.9	13	100	0	50	16	24	44	16	1.86
10812448--10812485	20	1.9	20	94	0	67	68	15	0	15	1.22
10812763--10812948	4	47.5	4	66	17	52	65	1	3	29	1.17
10812768--10812869	38	2.7	38	80	11	127	66	0	2	29	1.12
10812833--10812957	27	4.7	27	70	18	102	67	0	3	28	1.12
10812838--10812923	24	3.5	24	79	14	104	67	0	1	31	0.98
10813591--10813710	60	2.0	60	93	0	204	26	19	20	33	1.97
10817009--10817065	26	2.2	24	79	11	60	38	3	0	57	1.16
10818663--10818819	52	3.0	52	79	7	176	43	6	19	30	1.76
10819526--10819595	32	2.2	33	89	2	106	45	2	14	37	1.59
10825291--10825315	2	12.5	2	100	0	50	48	0	0	52	1.00
10830666--10830817	79	1.9	80	90	1	243	16	32	15	35	1.91
10835412--10835792	212	1.8	208	88	4	577	30	14	25	28	1.95
10839759--10839826	21	3.2	21	100	0	136	35	4	29	30	1.77
10850935--10850999	32	2.0	33	90	6	105	56	10	23	9	1.61
10868253--10868325	35	2.1	36	86	2	103	34	15	23	27	1.94
10875073--10875102	15	2.0	15	100	0	60	53	0	0	46	1.00
10875077--10875110	15	2.3	15	89	0	50	55	0	0	44	0.99
10884369--10884441	31	2.4	30	80	8	78	42	6	1	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10884386--10884444	31	1.9	31	92	0	100	42	3	0	54	1.17
10884465--10884527	28	2.2	29	83	10	78	58	6	3	31	1.39
10886209--10886255	24	2.0	24	86	0	67	53	0	6	40	1.27
10894474--10894755	140	2.0	140	98	0	546	42	19	16	21	1.89
10896752--10896794	20	2.0	23	86	13	65	60	6	11	20	1.54
10900282--10900324	18	2.8	14	75	24	50	41	16	9	32	1.80
10900940--10901012	27	2.6	28	84	8	94	26	28	12	32	1.92
10901097--10901153	30	1.9	30	88	0	87	52	0	0	47	1.00
10901091--10901162	30	2.4	30	81	6	83	55	0	0	44	0.99
10902017--10902060	15	2.9	15	82	0	61	9	11	0	79	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64