genome.fa.s224.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  20  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2827330--2827354	13	1.9	13	100	0	50	24	0	16	60	1.36
2827938--2827991	17	3.1	17	75	2	54	59	14	0	25	1.36
2831032--2831110	30	2.6	29	79	18	88	74	5	7	12	1.19
2831088--2831128	18	2.4	18	88	8	59	80	2	14	2	0.92
2832435--2832771	86	3.9	85	82	3	399	27	17	14	40	1.88
2832578--2832658	34	2.4	34	81	8	92	30	18	13	37	1.90
2832675--2832736	17	3.5	18	78	8	65	30	17	17	33	1.94
2832442--2832820	86	4.4	85	81	3	375	29	17	14	38	1.89
2836898--2836937	11	3.6	11	83	9	55	20	7	10	62	1.50
2837156--2837195	19	2.0	20	85	4	55	32	0	15	52	1.43
2840222--2840267	22	2.1	21	88	4	65	54	4	6	34	1.46
2841067--2841122	14	3.9	14	73	13	51	48	3	7	41	1.48
2841557--2841592	16	2.2	17	90	5	56	63	0	0	36	0.94
2841936--2841976	20	2.0	20	85	0	55	53	2	0	43	1.13
2843864--2843912	24	2.0	24	88	4	71	44	10	4	40	1.57
2844838--2844869	17	1.9	17	93	6	57	12	3	0	84	0.74
2847799--2847834	15	2.5	14	90	4	54	25	27	11	36	1.90
2851577--2851676	51	2.0	51	82	4	121	31	21	11	37	1.88
2851703--2851739	18	2.1	17	90	5	56	37	18	8	35	1.81
2852721--2852811	3	32.3	3	79	16	79	36	1	2	60	1.16
2852700--2852779	5	15.4	5	75	14	56	37	3	3	55	1.36
2853178--2853240	21	3.2	19	73	10	63	20	1	25	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2853307--2853356	19	2.6	19	93	0	82	30	4	24	42	1.73
2853348--2853372	13	1.9	13	100	0	50	24	0	16	60	1.36
2857030--2857107	30	2.5	29	78	19	86	74	5	7	12	1.20
2857091--2857138	9	5.4	9	80	9	55	77	0	20	2	0.88
2858432--2858768	86	3.9	85	81	3	390	27	16	14	40	1.88
2858575--2858655	34	2.4	34	81	8	92	30	18	13	37	1.90
2858671--2858733	17	3.6	18	78	8	67	30	17	17	34	1.93
2858439--2858817	86	4.4	85	80	3	366	29	17	14	39	1.89
2862885--2862924	11	3.6	11	83	9	55	20	7	10	62	1.50
2863142--2863181	19	2.0	20	85	4	55	32	0	15	52	1.43
2866193--2866239	21	2.1	23	84	7	62	53	4	6	36	1.46
2867056--2867111	14	3.9	14	77	13	60	46	3	7	42	1.48
2867508--2867577	22	3.0	23	78	19	74	60	0	4	35	1.17
2867548--2867578	16	1.9	16	93	0	53	67	0	0	32	0.91
2869837--2869885	24	2.0	24	88	4	71	44	10	4	40	1.57
2869898--2869932	3	11.7	3	100	0	70	68	0	0	31	0.90
2870820--2870859	14	2.9	13	85	10	53	12	7	0	80	0.91
2880684--2880736	26	2.0	26	85	0	70	24	7	13	54	1.64
2881687--2881841	10	16.1	10	73	10	126	58	7	2	32	1.39
2881684--2881821	57	2.4	57	80	13	167	59	6	3	30	1.40
2881684--2881841	29	5.5	29	76	7	135	58	6	3	31	1.40
2882018--2882135	8	13.0	8	71	21	58	56	5	1	36	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2882264--2882309	20	2.3	20	88	7	67	63	2	0	34	1.07
2882397--2882472	20	3.9	19	82	5	98	42	2	5	50	1.39
2882371--2882454	39	2.2	39	85	6	116	41	1	5	51	1.34
2882544--2882644	10	10.6	9	71	17	53	40	0	4	53	1.29
2882544--2882594	20	2.5	20	78	6	59	41	1	1	54	1.22
2882589--2882638	18	2.7	18	78	3	55	32	0	8	60	1.26
2882658--2882714	22	2.6	22	75	2	62	22	1	10	64	1.34
2882721--2882754	12	2.8	12	86	4	50	32	2	2	61	1.26
2887225--2887631	194	2.1	198	86	3	556	38	10	10	40	1.74
2890116--2890151	17	2.1	18	89	5	56	16	5	8	69	1.33
2890648--2890692	22	2.0	22	83	8	56	20	0	11	68	1.19
2890648--2890688	14	2.9	15	86	13	52	21	0	9	68	1.18
2890660--2890706	7	6.7	7	85	9	53	12	2	14	70	1.26
2894918--2895222	143	2.1	144	80	6	341	31	11	14	42	1.81
2898915--2898988	37	2.0	37	100	0	148	51	13	10	24	1.73
2898915--2898975	16	3.5	15	71	28	50	54	11	8	26	1.64
2900426--2900486	9	6.6	9	80	12	70	77	0	1	21	0.86
2900425--2900476	11	5.2	11	79	13	51	76	0	1	21	0.87
2900426--2900486	19	3.3	18	84	9	70	77	0	1	21	0.86
2901917--2901946	2	15.0	2	100	0	60	50	0	0	50	1.00
2902087--2902142	21	2.6	21	78	13	60	71	5	1	21	1.15
2902709--2902776	27	2.6	27	80	2	84	47	22	10	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2902932--2902970	19	2.1	19	90	0	60	38	30	12	17	1.88
2902938--2902979	19	2.2	19	86	0	57	40	23	14	21	1.90
2906947--2906986	3	13.3	3	100	0	80	65	0	0	35	0.93
2906985--2907013	3	9.7	3	100	0	58	34	0	31	34	1.58
2908905--2908975	16	4.5	15	76	11	61	76	4	16	2	1.07
2908896--2908946	20	2.5	20	81	6	59	76	3	15	3	1.08
2908932--2908975	14	3.1	14	80	9	54	77	4	18	0	0.94
2910009--2910146	22	6.3	22	68	6	73	27	18	21	33	1.96
2910294--2910543	32	7.8	32	73	8	211	33	16	18	30	1.94
2910311--2910537	97	2.3	97	81	4	253	34	17	18	29	1.93
2910518--2910596	31	2.7	28	78	16	79	32	15	18	32	1.92
2911233--2911299	9	7.5	8	79	17	62	70	2	1	25	1.10
2911233--2911299	17	3.8	16	76	21	62	70	2	1	25	1.10
2911232--2911296	29	2.3	28	86	7	87	69	3	1	26	1.12
2911235--2911287	20	2.9	17	77	22	54	67	3	1	26	1.17
2912543--2912597	19	2.9	18	78	5	56	21	9	25	43	1.82
2912572--2912627	20	2.8	20	76	12	62	28	8	17	44	1.79
2915243--2915298	8	7.2	8	78	9	55	0	0	14	85	0.59
2915391--2915756	140	2.6	140	78	6	332	48	11	19	21	1.80
2915535--2915758	70	3.2	70	72	5	200	48	10	19	21	1.78
2920386--2920424	18	2.2	18	95	0	69	28	0	12	58	1.34
2920836--2920872	19	1.9	19	88	0	56	45	32	0	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2921474--2921516	21	2.0	21	86	0	59	23	32	25	18	1.97
2922577--2922615	18	2.1	19	86	13	55	56	5	7	30	1.49
2923230--2923263	15	2.3	15	89	0	50	73	8	14	2	1.19
2923914--2923939	2	13.0	2	100	0	52	50	0	0	50	1.00
2924078--2924123	21	2.3	18	82	17	56	71	6	0	21	1.08
2926448--2926500	16	3.4	16	84	7	65	50	5	0	43	1.25
2935231--2935276	22	2.0	24	83	8	60	32	4	4	58	1.37
2937019--2937665	331	2.0	328	90	2	1010	30	11	15	42	1.83
2937900--2937935	15	2.4	15	85	0	54	22	0	13	63	1.29
2938209--2938349	54	2.6	54	82	11	173	48	12	9	29	1.72
2938390--2938564	56	3.2	56	77	3	183	42	11	17	28	1.84
2938419--2938566	54	2.7	56	80	4	156	45	11	15	27	1.81
2947609--2947652	15	3.0	15	78	15	56	63	6	15	13	1.49
2952146--2952179	17	2.0	17	94	0	59	29	26	5	38	1.80
2957539--2957580	21	2.0	21	95	0	75	64	4	7	23	1.38
2957541--2957589	21	2.3	21	85	0	62	63	6	10	20	1.47
2959347--2959379	13	2.4	14	90	5	50	78	6	0	15	0.93
2960741--2960782	18	2.3	18	91	4	66	7	0	45	47	1.30
2960749--2960850	18	5.7	18	73	16	70	12	0	39	47	1.49
2960803--2960851	24	2.0	25	84	4	64	10	2	42	44	1.49
2960813--2960891	31	2.5	32	76	15	85	12	0	39	48	1.41
2961060--2961126	20	3.3	20	82	2	80	19	0	35	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2961061--2961194	67	2.0	68	88	1	198	17	0	37	44	1.49
2961089--2961153	27	2.5	27	73	9	64	20	0	33	46	1.51
2961121--2961193	20	3.7	19	81	7	74	15	0	39	45	1.46
2961068--2961244	20	8.9	19	70	16	71	17	0	37	45	1.49
2963700--2963750	22	2.2	23	83	13	61	15	11	0	72	1.12
2964750--2964775	5	5.2	5	100	0	52	19	0	0	80	0.71
2965074--2965110	13	2.8	14	88	8	51	78	2	0	18	0.87
2965452--2965485	17	2.0	17	94	0	59	55	5	20	17	1.62
2968827--2968866	3	13.3	3	89	0	62	62	2	2	32	1.22
2973658--2973690	16	2.2	15	89	10	50	54	21	6	18	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64