genome.fa.s224.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168049.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_30, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11202444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   

This is table  41  of  64  ( 7596 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6494085--6494166	37	2.2	38	82	2	94	45	1	2	51	1.22
6494185--6494485	11	27.1	11	68	22	89	51	0	1	45	1.19
6494080--6494484	15	25.8	16	68	22	147	50	1	1	46	1.21
6494189--6494473	19	15.9	18	64	25	85	52	1	2	44	1.19
6494211--6494424	36	5.9	33	71	21	112	52	0	1	44	1.18
6494276--6494486	55	4.0	52	72	17	152	52	0	1	45	1.15
6494548--6494635	22	3.9	22	86	5	113	47	1	1	50	1.16
6494448--6494607	61	2.8	56	73	17	139	47	1	2	48	1.23
6494560--6494651	22	3.8	25	81	9	77	51	2	0	46	1.13
6494590--6494651	27	2.4	26	81	7	72	51	3	0	45	1.17
6496227--6496298	27	2.6	27	77	4	72	58	1	6	33	1.33
6500403--6500442	13	3.0	13	85	7	53	50	7	0	42	1.30
6503131--6503162	7	4.4	7	96	4	55	46	3	0	50	1.17
6505046--6505102	19	3.1	19	77	7	64	42	1	3	52	1.28
6509807--6509862	12	4.6	12	74	10	51	28	0	16	55	1.41
6510519--6510587	30	2.4	28	73	9	66	44	2	4	47	1.37
6510614--6510703	29	3.2	28	80	10	94	63	1	3	32	1.18
6511821--6511859	18	2.1	18	85	9	51	28	2	0	69	1.02
6511896--6511932	19	2.0	19	89	5	58	48	0	0	51	1.00
6512075--6512134	17	3.7	16	75	14	52	61	3	1	33	1.22
6518954--6519214	142	1.8	142	80	4	312	43	6	10	38	1.66
6520055--6520096	20	2.1	20	86	8	59	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6520111--6520220	22	5.3	22	76	16	110	49	6	0	44	1.28
6520138--6520220	22	3.6	22	93	4	130	49	6	0	44	1.27
6520184--6520277	29	3.4	29	70	24	85	54	2	0	43	1.12
6520191--6520482	11	28.0	11	69	20	125	52	1	1	44	1.17
6520184--6520358	19	9.1	21	74	21	138	54	1	0	43	1.14
6520214--6520483	39	6.5	43	67	25	65	52	0	1	45	1.17
6520132--6520480	25	13.9	24	71	22	117	51	2	1	44	1.21
6520212--6520479	14	19.3	14	66	17	98	52	0	1	45	1.17
6520183--6520447	135	2.0	133	81	12	310	53	1	1	43	1.19
6520242--6520483	60	3.9	62	72	18	173	52	0	2	45	1.15
6520197--6520483	137	2.1	134	79	11	300	52	1	1	44	1.18
6520186--6520650	38	12.4	37	68	23	171	50	1	1	46	1.20
6520536--6520623	22	3.9	22	86	5	113	47	1	1	50	1.16
6520435--6520600	18	8.8	18	70	23	94	45	1	2	50	1.22
6520548--6520639	22	3.8	25	81	9	77	51	2	0	46	1.13
6520578--6520639	27	2.4	26	81	7	72	51	3	0	45	1.17
6520698--6520770	21	3.4	22	84	5	89	47	8	5	38	1.56
6520787--6520890	47	2.2	48	86	5	140	46	8	5	39	1.59
6522262--6522333	27	2.6	28	80	6	83	58	2	6	31	1.39
6526437--6526476	13	3.0	13	85	7	53	50	7	0	42	1.30
6530998--6531045	21	2.3	21	82	13	55	43	2	2	52	1.24
6535888--6535919	12	2.7	12	90	0	55	31	0	9	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6536083--6536112	9	3.2	9	95	4	51	63	0	0	36	0.95
6536036--6536103	26	2.6	29	73	19	69	51	0	0	48	1.00
6536085--6536114	10	3.1	10	95	4	53	63	0	0	36	0.95
6536570--6536639	30	2.4	29	82	2	95	42	2	4	50	1.37
6537404--6537446	18	2.4	18	82	14	54	39	0	2	58	1.11
6537848--6537885	20	1.9	20	94	0	67	26	2	0	71	1.00
6537924--6537962	20	2.0	20	90	5	62	51	0	0	48	1.00
6553420--6553466	25	1.9	25	82	4	60	40	10	6	42	1.65
6554423--6555189	324	2.4	325	81	6	860	44	14	8	32	1.74
6554340--6555302	163	6.0	162	76	8	656	44	14	8	32	1.75
6554635--6555300	323	2.1	322	81	7	762	45	14	8	31	1.75
6554503--6555300	324	2.5	322	80	7	764	44	14	8	32	1.75
6556474--6556508	18	1.9	18	94	0	61	28	11	20	40	1.87
6556980--6557041	25	2.5	25	81	5	72	50	1	22	25	1.59
6559521--6559578	5	11.2	5	78	7	53	56	3	3	36	1.33
6559529--6559595	10	7.1	9	75	20	57	53	4	4	37	1.41
6559532--6559572	15	2.7	15	88	0	64	51	4	4	39	1.45
6559547--6559612	31	2.2	29	86	10	89	56	4	4	34	1.40
6562147--6562184	16	2.3	17	86	4	51	31	2	2	63	1.22
6567890--6567975	37	2.3	38	81	4	93	45	1	2	51	1.21
6567994--6568295	11	27.1	11	68	22	91	52	0	1	44	1.19
6567875--6568294	15	27.8	16	67	21	157	50	1	1	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6568005--6568066	32	1.9	32	90	0	97	53	3	1	41	1.27
6568022--6568343	38	8.7	37	71	18	151	53	0	2	43	1.19
6567991--6568295	19	14.1	22	68	22	93	52	0	1	44	1.19
6568358--6568445	22	3.9	22	86	5	113	47	1	1	50	1.16
6568258--6568417	61	2.8	56	73	17	139	47	1	2	48	1.23
6568370--6568461	22	3.8	25	81	9	77	51	2	0	46	1.13
6568400--6568461	27	2.4	26	81	7	72	51	3	0	45	1.17
6568520--6568592	21	3.4	22	84	5	89	47	8	5	38	1.56
6568564--6568634	21	3.4	21	76	3	63	46	12	7	33	1.69
6570085--6570156	27	2.6	27	77	4	72	58	1	6	33	1.33
6574261--6574300	13	3.0	13	85	7	53	50	7	0	42	1.30
6576993--6577024	7	4.4	7	96	4	55	46	3	0	50	1.17
6582913--6582945	17	2.0	17	88	5	50	48	12	0	39	1.40
6583746--6583777	12	2.7	12	90	0	55	31	0	9	59	1.29
6583941--6583970	9	3.2	9	95	4	51	63	0	0	36	0.95
6583894--6583961	26	2.6	29	73	19	69	51	0	0	48	1.00
6583943--6583972	10	3.1	10	95	4	53	63	0	0	36	0.95
6584427--6584497	30	2.4	29	78	4	79	45	2	4	47	1.36
6584541--6584616	29	2.6	29	84	12	102	67	0	1	31	0.99
6585721--6585757	19	1.9	19	88	0	56	24	2	2	70	1.14
6585792--6585830	19	2.1	19	90	0	60	46	0	0	53	1.00
6602215--6603145	163	5.7	160	73	9	493	44	13	8	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6602215--6602941	325	2.2	322	80	6	770	44	13	8	33	1.74
6605882--6606335	231	2.0	231	98	0	874	40	15	12	30	1.86
6615108--6615574	52	8.6	53	77	11	351	32	12	15	39	1.85
6615108--6615502	163	2.4	163	82	4	458	32	12	15	39	1.84
6615138--6615497	166	2.2	163	82	5	440	32	13	15	38	1.85
6615398--6615619	52	4.3	51	75	11	152	31	15	14	38	1.88
6615974--6616039	3	21.7	3	73	14	55	65	3	0	31	1.08
6615992--6616039	21	2.3	21	89	7	71	68	2	0	29	1.01
6615993--6616039	24	2.1	23	84	11	62	68	2	0	29	1.02
6616879--6616926	17	3.1	15	75	18	53	81	6	0	12	0.87
6616872--6616921	25	2.0	25	88	3	75	76	10	0	14	1.03
6617221--6617267	12	3.8	12	81	10	51	19	0	2	78	0.85
6617433--6617478	3	15.7	3	86	4	67	69	2	0	28	1.00
6617574--6617619	9	5.1	9	89	0	65	71	2	2	23	1.08
6617577--6617633	18	3.2	18	80	5	62	70	1	5	22	1.17
6617570--6617627	9	6.3	9	82	4	53	70	1	3	24	1.12
6618784--6618821	17	2.2	17	90	9	60	36	5	5	52	1.47
6618876--6618943	34	1.9	34	82	11	84	38	0	0	61	0.96
6622735--6622792	25	2.3	26	78	3	64	32	3	10	53	1.52
6624637--6624676	19	2.1	19	86	9	55	42	0	0	57	0.98
6625069--6625126	29	2.0	30	86	3	82	50	1	10	37	1.47
6625100--6625167	29	2.3	29	84	2	82	55	5	0	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6625112--6625187	29	2.6	28	83	6	89	60	5	0	34	1.19
6637700--6637732	16	2.0	17	88	5	50	12	3	9	75	1.14
6637846--6638251	18	24.6	17	66	21	140	46	2	1	49	1.25
6637864--6637907	22	2.1	20	87	8	61	43	2	2	52	1.26
6637932--6638042	20	6.0	20	65	24	73	47	0	1	49	1.18
6638008--6638078	11	6.7	11	72	15	53	52	2	0	45	1.15
6638158--6638237	11	7.8	11	66	16	55	47	1	0	51	1.08
6638003--6638237	60	4.0	59	74	18	156	48	2	0	47	1.23
6642254--6642316	21	3.0	21	83	4	74	33	20	0	46	1.51
6641990--6642457	235	2.0	235	96	0	873	33	25	1	39	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64